RNA–Protein interactions for RNA: ENST00000366764.6

CDC42BPA-202, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best) BASIC

Gene CDC42BPA, Length 10,445 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-202ENST00000366764 NISCHQ9Y2I1 1504 aa20.83■□□□□ 0.93
CDC42BPA-202ENST00000366764 DCAF8L2P0C7V8 631 aa19.5■□□□□ 0.71
CDC42BPA-202ENST00000366764 SUPT5HO00267 1087 aaKnown RBP19.22■□□□□ 0.67
CDC42BPA-202ENST00000366764 SHROOM4Q9ULL8 1493 aa18.96■□□□□ 0.63
CDC42BPA-202ENST00000366764 PELP1Q8IZL8 1130 aaKnown RBP18.53■□□□□ 0.56
CDC42BPA-202ENST00000366764 ZEB1P37275 1124 aaPredicted RBP18.49■□□□□ 0.55
CDC42BPA-202ENST00000366764 PCGF6Q9BYE7 350 aa18.36■□□□□ 0.53
CDC42BPA-202ENST00000366764 APLP2Q06481 763 aa18.19■□□□□ 0.5
CDC42BPA-202ENST00000366764 CENPBP07199 599 aaPredicted RBP18.13■□□□□ 0.49
CDC42BPA-202ENST00000366764 MYT1Q01538 1121 aa18.06■□□□□ 0.48
CDC42BPA-202ENST00000366764 TRIM41Q8WV44 630 aa18.05■□□□□ 0.48
CDC42BPA-202ENST00000366764 HRCP23327 699 aa17.99■□□□□ 0.47
CDC42BPA-202ENST00000366764 TRIM26Q12899 539 aaPredicted RBP17.93■□□□□ 0.46
CDC42BPA-202ENST00000366764 EHMT2Q96KQ7 1210 aa17.92■□□□□ 0.46
CDC42BPA-202ENST00000366764 FAM9AQ8IZU1 332 aaPredicted RBP17.9■□□□□ 0.46
CDC42BPA-202ENST00000366764 CCER1Q8TC90 406 aaPredicted RBP17.85■□□□□ 0.45
CDC42BPA-202ENST00000366764 CHIC1Q5VXU3 224 aa17.8■□□□□ 0.44
CDC42BPA-202ENST00000366764 CCDC180Q9P1Z9 1646 aa17.66■□□□□ 0.42
CDC42BPA-202ENST00000366764 UBTFP17480 764 aaKnown RBP17.59■□□□□ 0.41
CDC42BPA-202ENST00000366764 TTBK1Q5TCY1 1321 aaPredicted RBP17.48■□□□□ 0.39
CDC42BPA-202ENST00000366764 NEFLP07196 543 aa17.43■□□□□ 0.38
CDC42BPA-202ENST00000366764 ZCCHC6Q5VYS8 1495 aaKnown RBP17.43■□□□□ 0.38
CDC42BPA-202ENST00000366764 LOC105371045A0A1W2PR82 267 aa17.36■□□□□ 0.37
CDC42BPA-202ENST00000366764 DCAF1Q9Y4B6 1507 aa17.35■□□□□ 0.37
CDC42BPA-202ENST00000366764 ERICH6Q7L0X2 663 aa17.34■□□□□ 0.37
CDC42BPA-202ENST00000366764 YTHDC1Q96MU7 727 aaKnown RBP17.21■□□□□ 0.35
CDC42BPA-202ENST00000366764 RANGAP1P46060 587 aaPredicted RBP17.18■□□□□ 0.34
CDC42BPA-202ENST00000366764 DIEXFQ68CQ4 756 aaKnown RBP17.16■□□□□ 0.34
CDC42BPA-202ENST00000366764 PPARGC1BQ86YN6 1023 aaKnown RBP17.15■□□□□ 0.34
CDC42BPA-202ENST00000366764 ATP1B4Q9UN42 357 aaPredicted RBP17.03■□□□□ 0.32
CDC42BPA-202ENST00000366764 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17■□□□□ 0.31
CDC42BPA-202ENST00000366764 CLSPNQ9HAW4 1339 aa16.97■□□□□ 0.31
CDC42BPA-202ENST00000366764 HNRNPUL2Q1KMD3 747 aaKnown RBP16.95■□□□□ 0.3
CDC42BPA-202ENST00000366764 SCRIBQ14160 1630 aa16.93■□□□□ 0.3
CDC42BPA-202ENST00000366764 ABCC9O60706 1549 aa16.83■□□□□ 0.29
CDC42BPA-202ENST00000366764 ZNF316A6NFI3 1004 aaPredicted RBP16.83■□□□□ 0.29
CDC42BPA-202ENST00000366764 ACIN1Q9UKV3 1341 aaKnown RBP16.82■□□□□ 0.28
CDC42BPA-202ENST00000366764 GTF3C3Q9Y5Q9 886 aa16.78■□□□□ 0.28
CDC42BPA-202ENST00000366764 ITGAEP38570 1179 aa16.74■□□□□ 0.27
CDC42BPA-202ENST00000366764 CSRNP3Q8WYN3 585 aa16.71■□□□□ 0.27
CDC42BPA-202ENST00000366764 MYO15BQ96JP2 1530 aa16.69■□□□□ 0.26
CDC42BPA-202ENST00000366764 EEA1Q15075 1411 aa16.68■□□□□ 0.26
CDC42BPA-202ENST00000366764 DAXXQ9UER7 740 aaPredicted RBP16.68■□□□□ 0.26
CDC42BPA-202ENST00000366764 NACADO15069 1562 aa16.66■□□□□ 0.26
CDC42BPA-202ENST00000366764 RB1CC1Q8TDY2 1594 aa16.61■□□□□ 0.25
CDC42BPA-202ENST00000366764 ANP32CO43423 234 aa16.59■□□□□ 0.25
CDC42BPA-202ENST00000366764 RTL5Q5HYW3 569 aaPredicted RBP16.56■□□□□ 0.24
CDC42BPA-202ENST00000366764 FAM50AQ14320 339 aaKnown RBP16.55■□□□□ 0.24
CDC42BPA-202ENST00000366764 RSF1Q96T23 1441 aaPredicted RBP16.54■□□□□ 0.24
CDC42BPA-202ENST00000366764 CDK11AQ9UQ88 783 aaPredicted RBP16.46■□□□□ 0.23
CDC42BPA-202ENST00000366764 GOLGA3Q08378 1498 aa16.44■□□□□ 0.22
CDC42BPA-202ENST00000366764 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
CDC42BPA-202ENST00000366764 CLIP1P30622 1438 aa16.41■□□□□ 0.22
CDC42BPA-202ENST00000366764 PABPN1Q86U42 306 aaKnown RBP eCLIP16.39■□□□□ 0.21
CDC42BPA-202ENST00000366764 CEP162Q5TB80 1403 aa16.39■□□□□ 0.21
CDC42BPA-202ENST00000366764 POLR3GLQ9BT43 218 aa16.39■□□□□ 0.21
CDC42BPA-202ENST00000366764 MYT1LQ9UL68 1186 aa16.39■□□□□ 0.21
CDC42BPA-202ENST00000366764 NEUROD1Q13562 356 aa16.38■□□□□ 0.21
CDC42BPA-202ENST00000366764 TNIKQ9UKE5 1360 aa16.34■□□□□ 0.21
CDC42BPA-202ENST00000366764 SCAF1Q9H7N4 1312 aaKnown RBP16.34■□□□□ 0.21
CDC42BPA-202ENST00000366764 CEP164Q9UPV0 1460 aa16.33■□□□□ 0.2
CDC42BPA-202ENST00000366764 TRIM52Q96A61 297 aa16.32■□□□□ 0.2
CDC42BPA-202ENST00000366764 TONSLQ96HA7 1378 aa16.3■□□□□ 0.2
CDC42BPA-202ENST00000366764 BCANQ96GW7 911 aa16.24■□□□□ 0.19
CDC42BPA-202ENST00000366764 WRNQ14191 1432 aaPredicted RBP eCLIP16.23■□□□□ 0.19
CDC42BPA-202ENST00000366764 ANP32AP39687 249 aaKnown RBP16.21■□□□□ 0.19
CDC42BPA-202ENST00000366764 BAZ1BQ9UIG0 1483 aaKnown RBP16.13■□□□□ 0.17
CDC42BPA-202ENST00000366764 MIER1Q8N108 512 aa16.12■□□□□ 0.17
CDC42BPA-202ENST00000366764 FKBP8Q14318 412 aa16.11■□□□□ 0.17
CDC42BPA-202ENST00000366764 KIF27Q86VH2 1401 aa16.1■□□□□ 0.17
CDC42BPA-202ENST00000366764 CNGB1Q14028 1251 aaPredicted RBP16.06■□□□□ 0.16
CDC42BPA-202ENST00000366764 HNRNPUQ00839 825 aaKnown RBP eCLIP16.04■□□□□ 0.16
CDC42BPA-202ENST00000366764 DDX10Q13206 875 aaKnown RBP16.04■□□□□ 0.16
CDC42BPA-202ENST00000366764 ZNF326Q5BKZ1 582 aaKnown RBP16.04■□□□□ 0.16
CDC42BPA-202ENST00000366764 TOP2AP11388 1531 aaKnown RBP16.03■□□□□ 0.16
CDC42BPA-202ENST00000366764 MTUS2Q5JR59 1369 aa16.03■□□□□ 0.16
CDC42BPA-202ENST00000366764 VPS8Q8N3P4 1428 aa16.02■□□□□ 0.16
CDC42BPA-202ENST00000366764 FHAD1B1AJZ9 1412 aa16■□□□□ 0.15
CDC42BPA-202ENST00000366764 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
CDC42BPA-202ENST00000366764 MROH2BQ7Z745 1585 aa15.99■□□□□ 0.15
CDC42BPA-202ENST00000366764 TIMELESSQ9UNS1 1208 aa15.98■□□□□ 0.15
CDC42BPA-202ENST00000366764 SMARCA2P51531 1590 aa15.97■□□□□ 0.15
CDC42BPA-202ENST00000366764 WIZO95785 1651 aa15.97■□□□□ 0.15
CDC42BPA-202ENST00000366764 P3H3Q8IVL6 736 aa15.97■□□□□ 0.15
CDC42BPA-202ENST00000366764 CCNB3Q8WWL7 1395 aa15.93■□□□□ 0.14
CDC42BPA-202ENST00000366764 SLC4A1APQ9BWU0 796 aaKnown RBP15.92■□□□□ 0.14
CDC42BPA-202ENST00000366764 CANXP27824 592 aaKnown RBP15.91■□□□□ 0.14
CDC42BPA-202ENST00000366764 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
CDC42BPA-202ENST00000366764 EIF4G2P78344 907 aaKnown RBP eCLIP15.9■□□□□ 0.14
CDC42BPA-202ENST00000366764 ABCC8Q09428 1581 aa15.89■□□□□ 0.13
CDC42BPA-202ENST00000366764 CCDC136Q96JN2 1154 aa15.88■□□□□ 0.13
CDC42BPA-202ENST00000366764 ZBTB47Q9UFB7 747 aaPredicted RBP15.87■□□□□ 0.13
CDC42BPA-202ENST00000366764 MRS2Q9HD23 443 aa15.87■□□□□ 0.13
CDC42BPA-202ENST00000366764 SMARCA4P51532 1647 aa15.86■□□□□ 0.13
CDC42BPA-202ENST00000366764 SOGA1O94964 1423 aa15.85■□□□□ 0.13
CDC42BPA-202ENST00000366764 TMC1Q8TDI8 760 aa15.84■□□□□ 0.13
CDC42BPA-202ENST00000366764 UPF2Q9HAU5 1272 aaKnown RBP15.83■□□□□ 0.13
CDC42BPA-202ENST00000366764 ANP32EQ9BTT0 268 aa15.83■□□□□ 0.12
CDC42BPA-202ENST00000366764 NEFMP07197 916 aa15.82■□□□□ 0.12
CDC42BPA-202ENST00000366764 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms