Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
SMC1BQ8NDV3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 RARRES2P6-201ENST00000567333 442 ntBASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
SMC1BQ8NDV3 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC29.78■■■□□ 2.36
SMC1BQ8NDV3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC29.78■■■□□ 2.36
SMC1BQ8NDV3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
SMC1BQ8NDV3 AC110285.6-201ENST00000617652 491 ntBASIC29.78■■■□□ 2.36
SMC1BQ8NDV3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
SMC1BQ8NDV3 AC131281.2-201ENST00000520478 145 ntBASIC29.77■■■□□ 2.36
SMC1BQ8NDV3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC29.77■■■□□ 2.36
SMC1BQ8NDV3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC29.77■■■□□ 2.36
SMC1BQ8NDV3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SMC1BQ8NDV3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
SMC1BQ8NDV3 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.76■■■□□ 2.35
SMC1BQ8NDV3 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC29.74■■■□□ 2.35
SMC1BQ8NDV3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC29.74■■■□□ 2.35
SMC1BQ8NDV3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
SMC1BQ8NDV3 AL136116.3-201ENST00000402907 1138 ntBASIC29.74■■■□□ 2.35
SMC1BQ8NDV3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC29.73■■■□□ 2.35
SMC1BQ8NDV3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC29.73■■■□□ 2.35
SMC1BQ8NDV3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SMC1BQ8NDV3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SMC1BQ8NDV3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
SMC1BQ8NDV3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC29.72■■■□□ 2.35
SMC1BQ8NDV3 AC104564.3-201ENST00000582367 638 ntBASIC29.72■■■□□ 2.35
SMC1BQ8NDV3 GUK1-205ENST00000366722 850 ntTSL 3 BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.71■■■□□ 2.35
SMC1BQ8NDV3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SMC1BQ8NDV3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC29.7■■■□□ 2.35
SMC1BQ8NDV3 SRR-208ENST00000576848 588 ntTSL 4 BASIC29.69■■■□□ 2.34
SMC1BQ8NDV3 AC087393.1-201ENST00000582896 145 ntBASIC29.69■■■□□ 2.34
SMC1BQ8NDV3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC29.68■■■□□ 2.34
SMC1BQ8NDV3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
SMC1BQ8NDV3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SMC1BQ8NDV3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC29.67■■■□□ 2.34
SMC1BQ8NDV3 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SMC1BQ8NDV3 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SMC1BQ8NDV3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SMC1BQ8NDV3 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC29.66■■■□□ 2.34
SMC1BQ8NDV3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 TSPY9P-201ENST00000440215 945 ntBASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 TSPY11P-201ENST00000442607 1045 ntBASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SMC1BQ8NDV3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
SMC1BQ8NDV3 AC133561.4-201ENST00000566112 224 ntBASIC29.64■■■□□ 2.34
SMC1BQ8NDV3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC29.64■■■□□ 2.34
SMC1BQ8NDV3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC29.63■■■□□ 2.33
SMC1BQ8NDV3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SMC1BQ8NDV3 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 AC096631.2-201ENST00000436136 790 ntBASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.62■■■□□ 2.33
SMC1BQ8NDV3 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
SMC1BQ8NDV3 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SMC1BQ8NDV3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC29.61■■■□□ 2.33
SMC1BQ8NDV3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC29.61■■■□□ 2.33
SMC1BQ8NDV3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC29.61■■■□□ 2.33
SMC1BQ8NDV3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.61■■■□□ 2.33
SMC1BQ8NDV3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC29.6■■■□□ 2.33
SMC1BQ8NDV3 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
SMC1BQ8NDV3 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
SMC1BQ8NDV3 EBPL-204ENST00000378272 766 ntTSL 3 BASIC29.59■■■□□ 2.33
SMC1BQ8NDV3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC29.59■■■□□ 2.33
SMC1BQ8NDV3 ZNRF2P3-201ENST00000424200 374 ntBASIC29.59■■■□□ 2.33
SMC1BQ8NDV3 AC026271.2-201ENST00000428091 497 ntBASIC29.59■■■□□ 2.33
SMC1BQ8NDV3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
SMC1BQ8NDV3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMC1BQ8NDV3 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMC1BQ8NDV3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMC1BQ8NDV3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMC1BQ8NDV3 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.58■■■□□ 2.33
SMC1BQ8NDV3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC29.58■■■□□ 2.33
SMC1BQ8NDV3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms