Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ABCA1O95477 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.58■□□□□ 0.89
ABCA1O95477 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ABCA1O95477 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
ABCA1O95477 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
ABCA1O95477 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
ABCA1O95477 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
ABCA1O95477 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.88
ABCA1O95477 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ABCA1O95477 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
ABCA1O95477 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCA1O95477 MIR4508-201ENST00000584178 70 ntBASIC20.57■□□□□ 0.88
ABCA1O95477 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ABCA1O95477 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.57■□□□□ 0.88
ABCA1O95477 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCA1O95477 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA1O95477 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.56■□□□□ 0.88
ABCA1O95477 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA1O95477 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.56■□□□□ 0.88
ABCA1O95477 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA1O95477 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCA1O95477 AC103724.3-201ENST00000564481 992 ntBASIC20.56■□□□□ 0.88
ABCA1O95477 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCA1O95477 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCA1O95477 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ABCA1O95477 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA1O95477 AL139393.2-201ENST00000608721 2025 ntBASIC20.54■□□□□ 0.88
ABCA1O95477 MIR6765-201ENST00000614092 87 ntBASIC20.54■□□□□ 0.88
ABCA1O95477 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA1O95477 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCA1O95477 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
ABCA1O95477 AC103834.1-201ENST00000520383 144 ntBASIC20.53■□□□□ 0.88
ABCA1O95477 THA1P-201ENST00000590384 1145 ntBASIC20.53■□□□□ 0.88
ABCA1O95477 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA1O95477 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCA1O95477 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC20.53■□□□□ 0.88
ABCA1O95477 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA1O95477 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA1O95477 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.52■□□□□ 0.88
ABCA1O95477 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.52■□□□□ 0.88
ABCA1O95477 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA1O95477 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA1O95477 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ABCA1O95477 YBX1P4-201ENST00000392794 808 ntBASIC20.52■□□□□ 0.88
ABCA1O95477 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
ABCA1O95477 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
ABCA1O95477 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC20.51■□□□□ 0.87
ABCA1O95477 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCA1O95477 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ABCA1O95477 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.51■□□□□ 0.87
ABCA1O95477 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ABCA1O95477 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.51■□□□□ 0.87
ABCA1O95477 AP004833.2-201ENST00000532228 1454 ntBASIC20.51■□□□□ 0.87
ABCA1O95477 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
ABCA1O95477 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.51■□□□□ 0.87
ABCA1O95477 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCA1O95477 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ABCA1O95477 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCA1O95477 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ABCA1O95477 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ABCA1O95477 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA1O95477 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA1O95477 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA1O95477 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ABCA1O95477 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ABCA1O95477 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.48■□□□□ 0.87
ABCA1O95477 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCA1O95477 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ABCA1O95477 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.48■□□□□ 0.87
ABCA1O95477 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.48■□□□□ 0.87
ABCA1O95477 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
ABCA1O95477 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.48■□□□□ 0.87
ABCA1O95477 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
ABCA1O95477 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
ABCA1O95477 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA1O95477 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA1O95477 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA1O95477 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA1O95477 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
ABCA1O95477 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
ABCA1O95477 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA1O95477 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ABCA1O95477 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.47■□□□□ 0.87
ABCA1O95477 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
ABCA1O95477 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
ABCA1O95477 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA1O95477 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA1O95477 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ABCA1O95477 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.46■□□□□ 0.87
ABCA1O95477 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.45■□□□□ 0.86
ABCA1O95477 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ABCA1O95477 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA1O95477 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
ABCA1O95477 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA1O95477 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA1O95477 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ABCA1O95477 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.44■□□□□ 0.86
ABCA1O95477 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
ABCA1O95477 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ABCA1O95477 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms