Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC38.92■■■■□ 3.82
PCF11O94913 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC38.92■■■■□ 3.82
PCF11O94913 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC38.92■■■■□ 3.82
PCF11O94913 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC38.91■■■■□ 3.82
PCF11O94913 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC38.91■■■■□ 3.82
PCF11O94913 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC38.9■■■■□ 3.82
PCF11O94913 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC38.9■■■■□ 3.82
PCF11O94913 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC38.9■■■■□ 3.82
PCF11O94913 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC38.9■■■■□ 3.82
PCF11O94913 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC38.9■■■■□ 3.82
PCF11O94913 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC38.89■■■■□ 3.82
PCF11O94913 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC38.89■■■■□ 3.82
PCF11O94913 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC38.89■■■■□ 3.82
PCF11O94913 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC38.88■■■■□ 3.82
PCF11O94913 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC38.88■■■■□ 3.82
PCF11O94913 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC38.88■■■■□ 3.81
PCF11O94913 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC38.88■■■■□ 3.81
PCF11O94913 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC38.87■■■■□ 3.81
PCF11O94913 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC38.87■■■■□ 3.81
PCF11O94913 AL451085.2-201ENST00000605085 799 ntBASIC38.87■■■■□ 3.81
PCF11O94913 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC38.87■■■■□ 3.81
PCF11O94913 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC38.86■■■■□ 3.81
PCF11O94913 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC38.86■■■■□ 3.81
PCF11O94913 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC38.86■■■■□ 3.81
PCF11O94913 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC38.86■■■■□ 3.81
PCF11O94913 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC38.86■■■■□ 3.81
PCF11O94913 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC38.86■■■■□ 3.81
PCF11O94913 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC38.86■■■■□ 3.81
PCF11O94913 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC38.85■■■■□ 3.81
PCF11O94913 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC38.85■■■■□ 3.81
PCF11O94913 BEX3-202ENST00000372634 753 ntTSL 2 BASIC38.85■■■■□ 3.81
PCF11O94913 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC38.85■■■■□ 3.81
PCF11O94913 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC38.84■■■■□ 3.81
PCF11O94913 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC38.84■■■■□ 3.81
PCF11O94913 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC38.83■■■■□ 3.81
PCF11O94913 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC38.83■■■■□ 3.81
PCF11O94913 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC38.83■■■■□ 3.81
PCF11O94913 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC38.82■■■■□ 3.81
PCF11O94913 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC38.82■■■■□ 3.81
PCF11O94913 AC139426.1-201ENST00000568218 2529 ntBASIC38.82■■■■□ 3.81
PCF11O94913 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC38.82■■■■□ 3.8
PCF11O94913 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC38.82■■■■□ 3.8
PCF11O94913 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC38.82■■■■□ 3.8
PCF11O94913 MIR6765-201ENST00000614092 87 ntBASIC38.82■■■■□ 3.8
PCF11O94913 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC38.81■■■■□ 3.8
PCF11O94913 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC38.81■■■■□ 3.8
PCF11O94913 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
PCF11O94913 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC38.79■■■■□ 3.8
PCF11O94913 MIR935-201ENST00000401179 91 ntBASIC38.79■■■■□ 3.8
PCF11O94913 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC38.79■■■■□ 3.8
PCF11O94913 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC38.79■■■■□ 3.8
PCF11O94913 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC38.78■■■■□ 3.8
PCF11O94913 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC38.78■■■■□ 3.8
PCF11O94913 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
PCF11O94913 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
PCF11O94913 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC38.78■■■■□ 3.8
PCF11O94913 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC38.77■■■■□ 3.8
PCF11O94913 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC38.77■■■■□ 3.8
PCF11O94913 AL449106.1-201ENST00000608517 1980 ntBASIC38.77■■■■□ 3.8
PCF11O94913 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC38.76■■■■□ 3.8
PCF11O94913 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC38.76■■■■□ 3.8
PCF11O94913 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC38.76■■■■□ 3.8
PCF11O94913 LINC01003-201ENST00000564834 1764 ntBASIC38.76■■■■□ 3.79
PCF11O94913 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC38.75■■■■□ 3.79
PCF11O94913 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC38.75■■■■□ 3.79
PCF11O94913 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
PCF11O94913 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC38.74■■■■□ 3.79
PCF11O94913 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC38.74■■■■□ 3.79
PCF11O94913 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
PCF11O94913 PVT1_1.1-201ENST00000615125 194 ntBASIC38.74■■■■□ 3.79
PCF11O94913 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC38.73■■■■□ 3.79
PCF11O94913 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
PCF11O94913 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
PCF11O94913 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC38.72■■■■□ 3.79
PCF11O94913 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC38.72■■■■□ 3.79
PCF11O94913 AC010980.1-201ENST00000587192 1142 ntBASIC38.72■■■■□ 3.79
PCF11O94913 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC38.71■■■■□ 3.79
PCF11O94913 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC38.71■■■■□ 3.79
PCF11O94913 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC38.7■■■■□ 3.79
PCF11O94913 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
PCF11O94913 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC38.69■■■■□ 3.78
PCF11O94913 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC38.69■■■■□ 3.78
PCF11O94913 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC38.68■■■■□ 3.78
PCF11O94913 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC38.68■■■■□ 3.78
PCF11O94913 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC38.68■■■■□ 3.78
PCF11O94913 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC38.68■■■■□ 3.78
PCF11O94913 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC38.68■■■■□ 3.78
PCF11O94913 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC38.68■■■■□ 3.78
PCF11O94913 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
PCF11O94913 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC38.67■■■■□ 3.78
PCF11O94913 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC38.67■■■■□ 3.78
PCF11O94913 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC38.67■■■■□ 3.78
PCF11O94913 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC38.67■■■■□ 3.78
PCF11O94913 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC38.67■■■■□ 3.78
PCF11O94913 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC38.66■■■■□ 3.78
PCF11O94913 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC38.66■■■■□ 3.78
PCF11O94913 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC38.66■■■■□ 3.78
PCF11O94913 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC38.66■■■■□ 3.78
PCF11O94913 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC38.65■■■■□ 3.78
PCF11O94913 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC38.65■■■■□ 3.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms