Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC10.34□□□□□ -0.75
RPS28P62857 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC10.34□□□□□ -0.75
RPS28P62857 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC10.34□□□□□ -0.75
RPS28P62857 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC10.34□□□□□ -0.75
RPS28P62857 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
RPS28P62857 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC10.34□□□□□ -0.75
RPS28P62857 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC10.34□□□□□ -0.75
RPS28P62857 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 NARF-205ENST00000412079 1760 ntTSL 5 BASIC10.34□□□□□ -0.75
RPS28P62857 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
RPS28P62857 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC10.34□□□□□ -0.75
RPS28P62857 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 REXO1L1P-202ENST00000608646 1974 ntBASIC10.34□□□□□ -0.75
RPS28P62857 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
RPS28P62857 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 IRX1P1-201ENST00000438849 1838 ntBASIC10.33□□□□□ -0.76
RPS28P62857 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC10.33□□□□□ -0.76
RPS28P62857 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 OR2I1P-209ENST00000641730 5365 ntBASIC10.33□□□□□ -0.76
RPS28P62857 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 STX5-203ENST00000394690 1568 ntTSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 AC003102.1-202ENST00000563394 1796 ntBASIC10.33□□□□□ -0.76
RPS28P62857 FLYWCH1P1-201ENST00000460917 1874 ntBASIC10.33□□□□□ -0.76
RPS28P62857 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC10.33□□□□□ -0.76
RPS28P62857 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC10.33□□□□□ -0.76
RPS28P62857 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC10.33□□□□□ -0.76
RPS28P62857 HLA-DQB2-231ENST00000435145 2026 ntBASIC10.33□□□□□ -0.76
RPS28P62857 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.76
RPS28P62857 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
RPS28P62857 TJAP1-204ENST00000372449 2695 ntTSL 5 BASIC10.32□□□□□ -0.76
RPS28P62857 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC10.32□□□□□ -0.76
RPS28P62857 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC10.32□□□□□ -0.76
RPS28P62857 CICP17-201ENST00000418553 2377 ntBASIC10.32□□□□□ -0.76
RPS28P62857 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
RPS28P62857 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC10.32□□□□□ -0.76
RPS28P62857 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC10.32□□□□□ -0.76
RPS28P62857 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
RPS28P62857 PGR-210ENST00000619228 3038 ntTSL 5 BASIC10.32□□□□□ -0.76
RPS28P62857 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
RPS28P62857 AC099521.3-201ENST00000624251 2938 ntBASIC10.32□□□□□ -0.76
RPS28P62857 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC10.32□□□□□ -0.76
RPS28P62857 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC10.32□□□□□ -0.76
RPS28P62857 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.76
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms