RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 NISCHQ9Y2I1 1504 aa40.82■■■■■ 4.12
SNX1-208ENST00000559844 CCDC180Q9P1Z9 1646 aa36.05■■■■□ 3.36
SNX1-208ENST00000559844 ABCC9O60706 1549 aa34.74■■■■□ 3.15
SNX1-208ENST00000559844 ZCCHC6Q5VYS8 1495 aaKnown RBP34.12■■■■□ 3.05
SNX1-208ENST00000559844 DCAF8L2P0C7V8 631 aa33.92■■■■□ 3.02
SNX1-208ENST00000559844 DCAF1Q9Y4B6 1507 aa33.76■■■■□ 3
SNX1-208ENST00000559844 NACADO15069 1562 aa33.72■■■□□ 2.99
SNX1-208ENST00000559844 MYO15BQ96JP2 1530 aa33.67■■■□□ 2.98
SNX1-208ENST00000559844 RB1CC1Q8TDY2 1594 aa33.65■■■□□ 2.98
SNX1-208ENST00000559844 SCRIBQ14160 1630 aa33■■■□□ 2.87
SNX1-208ENST00000559844 UNC13AQ9UPW8 1703 aa32.99■■■□□ 2.87
SNX1-208ENST00000559844 SHROOM4Q9ULL8 1493 aa32.67■■■□□ 2.82
SNX1-208ENST00000559844 BICRAQ9NZM4 1560 aa32.62■■■□□ 2.81
SNX1-208ENST00000559844 PABPN1Q86U42 306 aaKnown RBP eCLIP32.55■■■□□ 2.8
SNX1-208ENST00000559844 CECR2Q9BXF3 1484 aa31.75■■■□□ 2.67
SNX1-208ENST00000559844 EIF4G1Q04637 1599 aaKnown RBP31.71■■■□□ 2.67
SNX1-208ENST00000559844 BAZ1AQ9NRL2 1556 aaPredicted RBP31.61■■■□□ 2.65
SNX1-208ENST00000559844 SMARCA4P51532 1647 aa31.58■■■□□ 2.65
SNX1-208ENST00000559844 MROH2BQ7Z745 1585 aa31.49■■■□□ 2.63
SNX1-208ENST00000559844 CC2D2AQ9P2K1 1620 aa31.46■■■□□ 2.63
SNX1-208ENST00000559844 RSF1Q96T23 1441 aaPredicted RBP31.32■■■□□ 2.6
SNX1-208ENST00000559844 DNAJC5BQ9UF47 199 aa31.32■■■□□ 2.6
SNX1-208ENST00000559844 SMARCA2P51531 1590 aa31.23■■■□□ 2.59
SNX1-208ENST00000559844 WIZO95785 1651 aa31.22■■■□□ 2.59
SNX1-208ENST00000559844 ATAD2BQ9ULI0 1458 aa31.22■■■□□ 2.59
SNX1-208ENST00000559844 PEG3Q9GZU2 1588 aa31.22■■■□□ 2.59
SNX1-208ENST00000559844 SUPT5HO00267 1087 aaKnown RBP31.12■■■□□ 2.57
SNX1-208ENST00000559844 NCAPD3P42695 1498 aa31.09■■■□□ 2.57
SNX1-208ENST00000559844 BAZ1BQ9UIG0 1483 aaKnown RBP31.02■■■□□ 2.56
SNX1-208ENST00000559844 HMGXB3Q12766 1538 aa31.02■■■□□ 2.56
SNX1-208ENST00000559844 TOP2AP11388 1531 aaKnown RBP30.87■■■□□ 2.53
SNX1-208ENST00000559844 CCDC88BA6NC98 1476 aa30.5■■■□□ 2.47
SNX1-208ENST00000559844 NESP48681 1621 aa30.24■■■□□ 2.43
SNX1-208ENST00000559844 CADPSQ9ULU8 1353 aa30.22■■■□□ 2.43
SNX1-208ENST00000559844 LAMC3Q9Y6N6 1575 aa30.22■■■□□ 2.43
SNX1-208ENST00000559844 CFTRP13569 1480 aa30.18■■■□□ 2.42
SNX1-208ENST00000559844 PRDM2Q13029 1718 aa30.1■■■□□ 2.41
SNX1-208ENST00000559844 CHIC1Q5VXU3 224 aa30.04■■■□□ 2.4
SNX1-208ENST00000559844 PDS5BQ9NTI5 1447 aa29.97■■■□□ 2.39
SNX1-208ENST00000559844 KIF21AQ7Z4S6 1674 aa29.94■■■□□ 2.38
SNX1-208ENST00000559844 FANCD2Q9BXW9 1451 aa29.91■■■□□ 2.38
SNX1-208ENST00000559844 ERCC6Q03468 1493 aa29.89■■■□□ 2.38
SNX1-208ENST00000559844 CEP164Q9UPV0 1460 aa29.83■■■□□ 2.37
SNX1-208ENST00000559844 MRC2Q9UBG0 1479 aa29.65■■■□□ 2.34
SNX1-208ENST00000559844 THOC2Q8NI27 1593 aaKnown RBP29.65■■■□□ 2.34
SNX1-208ENST00000559844 ABCC8Q09428 1581 aa29.63■■■□□ 2.33
SNX1-208ENST00000559844 URB2Q14146 1524 aaKnown RBP29.58■■■□□ 2.33
SNX1-208ENST00000559844 WDR62O43379 1518 aa29.54■■■□□ 2.32
SNX1-208ENST00000559844 WRNQ14191 1432 aaPredicted RBP eCLIP29.53■■■□□ 2.32
SNX1-208ENST00000559844 DNMBPQ6XZF7 1577 aa29.52■■■□□ 2.32
SNX1-208ENST00000559844 CUX1P39880 1505 aa29.51■■■□□ 2.31
SNX1-208ENST00000559844 TOPBP1Q92547 1522 aa29.5■■■□□ 2.31
SNX1-208ENST00000559844 SYNJ1O43426 1573 aa29.46■■■□□ 2.31
SNX1-208ENST00000559844 TOP2BQ02880 1626 aa29.41■■■□□ 2.3
SNX1-208ENST00000559844 BIVM-ERCC5R4GMW8 1640 aa29.41■■■□□ 2.3
SNX1-208ENST00000559844 FGD5Q6ZNL6 1462 aa29.32■■■□□ 2.28
SNX1-208ENST00000559844 CUX2O14529 1486 aa29.31■■■□□ 2.28
SNX1-208ENST00000559844 POLA1P09884 1462 aaPredicted RBP29.29■■■□□ 2.28
SNX1-208ENST00000559844 TRIM41Q8WV44 630 aa29.26■■■□□ 2.28
SNX1-208ENST00000559844 RAD54L2Q9Y4B4 1467 aa29.17■■■□□ 2.26
SNX1-208ENST00000559844 SOGA1O94964 1423 aa29.16■■■□□ 2.26
SNX1-208ENST00000559844 IFT140Q96RY7 1462 aa29.15■■■□□ 2.26
SNX1-208ENST00000559844 TARBP1Q13395 1621 aaKnown RBP29.15■■■□□ 2.26
SNX1-208ENST00000559844 WDR97A6NE52 1622 aa29.07■■■□□ 2.24
SNX1-208ENST00000559844 ABCA10Q8WWZ4 1543 aa29.04■■■□□ 2.24
SNX1-208ENST00000559844 ZNF608Q9ULD9 1512 aaPredicted RBP29.01■■■□□ 2.23
SNX1-208ENST00000559844 TDRD9Q8NDG6 1382 aaKnown RBP28.95■■■□□ 2.22
SNX1-208ENST00000559844 EIF4G3O43432 1585 aaKnown RBP28.95■■■□□ 2.22
SNX1-208ENST00000559844 AQRO60306 1485 aaKnown RBP eCLIP28.91■■■□□ 2.227e-7■■■■■ 31.9
SNX1-208ENST00000559844 ABCA5Q8WWZ7 1642 aa28.9■■■□□ 2.22
SNX1-208ENST00000559844 LOC105371045A0A1W2PR82 267 aa28.88■■■□□ 2.21
SNX1-208ENST00000559844 GAPVD1Q14C86 1478 aa28.86■■■□□ 2.21
SNX1-208ENST00000559844 KIF27Q86VH2 1401 aa28.85■■■□□ 2.21
SNX1-208ENST00000559844 PBRM1Q86U86 1689 aa28.82■■■□□ 2.2
SNX1-208ENST00000559844 RUSC2Q8N2Y8 1516 aa28.81■■■□□ 2.2
SNX1-208ENST00000559844 GRIN2BQ13224 1484 aa28.76■■■□□ 2.19
SNX1-208ENST00000559844 FAM9AQ8IZU1 332 aaPredicted RBP28.71■■■□□ 2.19
SNX1-208ENST00000559844 ERICH3Q5RHP9 1530 aa28.7■■■□□ 2.19
SNX1-208ENST00000559844 EEA1Q15075 1411 aa28.67■■■□□ 2.18
SNX1-208ENST00000559844 SNAPC4Q5SXM2 1469 aa28.66■■■□□ 2.18
SNX1-208ENST00000559844 IGF1RP08069 1367 aa28.64■■■□□ 2.18
SNX1-208ENST00000559844 MAGI1Q96QZ7 1491 aaPredicted RBP28.62■■■□□ 2.17
SNX1-208ENST00000559844 CUL7Q14999 1698 aa28.59■■■□□ 2.17
SNX1-208ENST00000559844 ADAMTS12P58397 1594 aa28.59■■■□□ 2.17
SNX1-208ENST00000559844 CSRNP3Q8WYN3 585 aa28.55■■■□□ 2.16
SNX1-208ENST00000559844 FHAD1B1AJZ9 1412 aa28.52■■■□□ 2.16
SNX1-208ENST00000559844 CHD1O14646 1710 aa28.51■■■□□ 2.15
SNX1-208ENST00000559844 SYNJ2O15056 1496 aa28.5■■■□□ 2.15
SNX1-208ENST00000559844 CARMIL1Q5VZK9 1371 aa28.5■■■□□ 2.15
SNX1-208ENST00000559844 FBLN2P98095 1184 aa28.47■■■□□ 2.15
SNX1-208ENST00000559844 CHMP7Q8WUX9 453 aaPredicted RBP28.45■■■□□ 2.14
SNX1-208ENST00000559844 PRXQ9BXM0 1461 aa28.44■■■□□ 2.14
SNX1-208ENST00000559844 GRIN2AQ12879 1464 aa28.4■■■□□ 2.14
SNX1-208ENST00000559844 RAPGEF2Q9Y4G8 1499 aa28.4■■■□□ 2.14
SNX1-208ENST00000559844 KIF21BO75037 1637 aa28.38■■■□□ 2.13
SNX1-208ENST00000559844 EHMT2Q96KQ7 1210 aa28.29■■■□□ 2.12
SNX1-208ENST00000559844 CEP170Q5SW79 1584 aa28.26■■■□□ 2.11
SNX1-208ENST00000559844 GOLGA3Q08378 1498 aa28.24■■■□□ 2.11
SNX1-208ENST00000559844 NUP160Q12769 1436 aa28.23■■■□□ 2.11
SNX1-208ENST00000559844 OSCARQ8IYS5 282 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms