Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CSPG4Q6UVK1 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.66■□□□□ 0.9
CSPG4Q6UVK1 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC20.66■□□□□ 0.9
CSPG4Q6UVK1 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.65■□□□□ 0.9
CSPG4Q6UVK1 AC103724.3-201ENST00000564481 992 ntBASIC20.65■□□□□ 0.9
CSPG4Q6UVK1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.65■□□□□ 0.9
CSPG4Q6UVK1 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.65■□□□□ 0.9
CSPG4Q6UVK1 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.65■□□□□ 0.9
CSPG4Q6UVK1 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CSPG4Q6UVK1 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 MIR4508-201ENST00000584178 70 ntBASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CSPG4Q6UVK1 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSPG4Q6UVK1 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC20.63■□□□□ 0.89
CSPG4Q6UVK1 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSPG4Q6UVK1 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.63■□□□□ 0.89
CSPG4Q6UVK1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.63■□□□□ 0.89
CSPG4Q6UVK1 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CSPG4Q6UVK1 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
CSPG4Q6UVK1 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSPG4Q6UVK1 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CSPG4Q6UVK1 MIR6765-201ENST00000614092 87 ntBASIC20.62■□□□□ 0.89
CSPG4Q6UVK1 ST7-AS1-201ENST00000456775 1889 ntBASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CSPG4Q6UVK1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CSPG4Q6UVK1 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CSPG4Q6UVK1 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CSPG4Q6UVK1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CSPG4Q6UVK1 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CSPG4Q6UVK1 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.58■□□□□ 0.88
CSPG4Q6UVK1 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CSPG4Q6UVK1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.57■□□□□ 0.88
CSPG4Q6UVK1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.57■□□□□ 0.88
CSPG4Q6UVK1 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CSPG4Q6UVK1 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSPG4Q6UVK1 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSPG4Q6UVK1 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CSPG4Q6UVK1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CSPG4Q6UVK1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.55■□□□□ 0.88
CSPG4Q6UVK1 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CSPG4Q6UVK1 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.55■□□□□ 0.88
CSPG4Q6UVK1 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CSPG4Q6UVK1 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CSPG4Q6UVK1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CSPG4Q6UVK1 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CSPG4Q6UVK1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.54■□□□□ 0.88
CSPG4Q6UVK1 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CSPG4Q6UVK1 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.54■□□□□ 0.88
CSPG4Q6UVK1 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CSPG4Q6UVK1 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CSPG4Q6UVK1 AC100797.4-201ENST00000631653 1827 ntBASIC20.53■□□□□ 0.88
CSPG4Q6UVK1 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.53■□□□□ 0.88
CSPG4Q6UVK1 AC239859.2-201ENST00000444165 318 ntBASIC20.53■□□□□ 0.88
CSPG4Q6UVK1 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.53■□□□□ 0.88
CSPG4Q6UVK1 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CSPG4Q6UVK1 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
CSPG4Q6UVK1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CSPG4Q6UVK1 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CSPG4Q6UVK1 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CSPG4Q6UVK1 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CSPG4Q6UVK1 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.52■□□□□ 0.87
CSPG4Q6UVK1 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CSPG4Q6UVK1 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.52■□□□□ 0.87
CSPG4Q6UVK1 AL031848.2-201ENST00000607670 837 ntBASIC20.52■□□□□ 0.87
CSPG4Q6UVK1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CSPG4Q6UVK1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CSPG4Q6UVK1 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CSPG4Q6UVK1 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CSPG4Q6UVK1 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.5■□□□□ 0.87
CSPG4Q6UVK1 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CSPG4Q6UVK1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms