Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 AC142472.1-201ENST00000612013 1741 ntBASIC19.85■□□□□ 0.77
TRAV3A0A0B4J244 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV3A0A0B4J244 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRAV3A0A0B4J244 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV3A0A0B4J244 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV3A0A0B4J244 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV3A0A0B4J244 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.84■□□□□ 0.77
TRAV3A0A0B4J244 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRAV3A0A0B4J244 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.83■□□□□ 0.77
TRAV3A0A0B4J244 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
TRAV3A0A0B4J244 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
TRAV3A0A0B4J244 DUSP8P4-201ENST00000399538 1761 ntBASIC19.81■□□□□ 0.76
TRAV3A0A0B4J244 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV3A0A0B4J244 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRAV3A0A0B4J244 AC020928.2-201ENST00000588717 2197 ntBASIC19.81■□□□□ 0.76
TRAV3A0A0B4J244 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC19.81■□□□□ 0.76
TRAV3A0A0B4J244 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
TRAV3A0A0B4J244 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV3A0A0B4J244 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV3A0A0B4J244 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV3A0A0B4J244 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.8■□□□□ 0.76
TRAV3A0A0B4J244 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAV3A0A0B4J244 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAV3A0A0B4J244 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAV3A0A0B4J244 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRAV3A0A0B4J244 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 LINC01971-201ENST00000617888 1048 ntBASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRAV3A0A0B4J244 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV3A0A0B4J244 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV3A0A0B4J244 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV3A0A0B4J244 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRAV3A0A0B4J244 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV3A0A0B4J244 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV3A0A0B4J244 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV3A0A0B4J244 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRAV3A0A0B4J244 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 CHST11-202ENST00000546689 756 ntTSL 2 BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRAV3A0A0B4J244 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L13-201ENST00000554103 1267 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L15-201ENST00000611059 1267 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L23-201ENST00000615195 1269 ntBASIC19.72■□□□□ 0.75
TRAV3A0A0B4J244 DUX4L24-201ENST00000617576 1269 ntBASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms