RNA–Protein interactions for RNA: ENST00000302177.2

FOXA3-201, Transcript of forkhead box A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA3, Length 1,989 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3-201ENST00000302177 NISCHQ9Y2I1 1504 aa50.33■■■■■ 5.65
FOXA3-201ENST00000302177 CCDC180Q9P1Z9 1646 aa43.05■■■■■ 4.48
FOXA3-201ENST00000302177 ZCCHC6Q5VYS8 1495 aaKnown RBP42.58■■■■■ 4.41
FOXA3-201ENST00000302177 SHROOM4Q9ULL8 1493 aa42.29■■■■■ 4.36
FOXA3-201ENST00000302177 ABCC9O60706 1549 aa42.12■■■■■ 4.33
FOXA3-201ENST00000302177 DCAF1Q9Y4B6 1507 aa41.58■■■■■ 4.25
FOXA3-201ENST00000302177 SUPT5HO00267 1087 aaKnown RBP41.54■■■■■ 4.24
FOXA3-201ENST00000302177 DCAF8L2P0C7V8 631 aa41.21■■■■■ 4.19
FOXA3-201ENST00000302177 CHIC1Q5VXU3 224 aa40.61■■■■■ 4.09
FOXA3-201ENST00000302177 MYO15BQ96JP2 1530 aa40.48■■■■■ 4.07
FOXA3-201ENST00000302177 RB1CC1Q8TDY2 1594 aa40.4■■■■■ 4.06
FOXA3-201ENST00000302177 NACADO15069 1562 aa40.39■■■■■ 4.06
FOXA3-201ENST00000302177 SCRIBQ14160 1630 aa39.87■■■■□ 3.97
FOXA3-201ENST00000302177 RSF1Q96T23 1441 aaPredicted RBP39.72■■■■□ 3.95
FOXA3-201ENST00000302177 PABPN1Q86U42 306 aaKnown RBP eCLIP39.52■■■■□ 3.92
FOXA3-201ENST00000302177 UNC13AQ9UPW8 1703 aa39.51■■■■□ 3.92
FOXA3-201ENST00000302177 HRCP23327 699 aa39.26■■■■□ 3.88
FOXA3-201ENST00000302177 BICRAQ9NZM4 1560 aa39.25■■■■□ 3.87
FOXA3-201ENST00000302177 LOC105371045A0A1W2PR82 267 aa39.16■■■■□ 3.86
FOXA3-201ENST00000302177 PCGF6Q9BYE7 350 aa39.08■■■■□ 3.85
FOXA3-201ENST00000302177 CECR2Q9BXF3 1484 aa39.03■■■■□ 3.84
FOXA3-201ENST00000302177 MROH2BQ7Z745 1585 aa38.97■■■■□ 3.83
FOXA3-201ENST00000302177 TRIM41Q8WV44 630 aa38.92■■■■□ 3.82
FOXA3-201ENST00000302177 WIZO95785 1651 aa38.71■■■■□ 3.79
FOXA3-201ENST00000302177 BAZ1AQ9NRL2 1556 aaPredicted RBP38.7■■■■□ 3.79
FOXA3-201ENST00000302177 TRIM26Q12899 539 aaPredicted RBP38.66■■■■□ 3.78
FOXA3-201ENST00000302177 DNAJC5BQ9UF47 199 aa38.6■■■■□ 3.77
FOXA3-201ENST00000302177 EIF4G1Q04637 1599 aaKnown RBP38.35■■■■□ 3.73
FOXA3-201ENST00000302177 TOP2AP11388 1531 aaKnown RBP38.32■■■■□ 3.72
FOXA3-201ENST00000302177 SMARCA4P51532 1647 aa38.31■■■■□ 3.72
FOXA3-201ENST00000302177 FAM9AQ8IZU1 332 aaPredicted RBP38.28■■■■□ 3.72
FOXA3-201ENST00000302177 PPARGC1BQ86YN6 1023 aaKnown RBP38.07■■■■□ 3.68
FOXA3-201ENST00000302177 CCDC88BA6NC98 1476 aa38.04■■■■□ 3.68
FOXA3-201ENST00000302177 SMARCA2P51531 1590 aa38.03■■■■□ 3.68
FOXA3-201ENST00000302177 CC2D2AQ9P2K1 1620 aa38■■■■□ 3.67
FOXA3-201ENST00000302177 ZEB1P37275 1124 aaPredicted RBP37.97■■■■□ 3.67
FOXA3-201ENST00000302177 PEG3Q9GZU2 1588 aa37.77■■■■□ 3.64
FOXA3-201ENST00000302177 ABCC8Q09428 1581 aa37.73■■■■□ 3.63
FOXA3-201ENST00000302177 EHMT2Q96KQ7 1210 aa37.68■■■■□ 3.62
FOXA3-201ENST00000302177 EEA1Q15075 1411 aa37.63■■■■□ 3.61
FOXA3-201ENST00000302177 WRNQ14191 1432 aaPredicted RBP eCLIP37.48■■■■□ 3.59
FOXA3-201ENST00000302177 ATAD2BQ9ULI0 1458 aa37.44■■■■□ 3.58
FOXA3-201ENST00000302177 TNIKQ9UKE5 1360 aa37.42■■■■□ 3.58
FOXA3-201ENST00000302177 SOGA1O94964 1423 aa37.41■■■■□ 3.58
FOXA3-201ENST00000302177 CSRNP3Q8WYN3 585 aa37.35■■■■□ 3.57
FOXA3-201ENST00000302177 NCAPD3P42695 1498 aa37.34■■■■□ 3.57
FOXA3-201ENST00000302177 CEP162Q5TB80 1403 aa37.31■■■■□ 3.56
FOXA3-201ENST00000302177 BAZ1BQ9UIG0 1483 aaKnown RBP37.19■■■■□ 3.54
FOXA3-201ENST00000302177 RUSC2Q8N2Y8 1516 aa37.18■■■■□ 3.54
FOXA3-201ENST00000302177 GOLGA3Q08378 1498 aa37.17■■■■□ 3.54
FOXA3-201ENST00000302177 HMGXB3Q12766 1538 aa37.1■■■■□ 3.53
FOXA3-201ENST00000302177 SYNJ1O43426 1573 aa37.06■■■■□ 3.52
FOXA3-201ENST00000302177 UBTFP17480 764 aaKnown RBP37.02■■■■□ 3.52
FOXA3-201ENST00000302177 KIF21BO75037 1637 aa37■■■■□ 3.51
FOXA3-201ENST00000302177 CEP164Q9UPV0 1460 aa37■■■■□ 3.51
FOXA3-201ENST00000302177 CCER1Q8TC90 406 aaPredicted RBP36.85■■■■□ 3.49
FOXA3-201ENST00000302177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.82■■■■□ 3.48
FOXA3-201ENST00000302177 TOP2BQ02880 1626 aa36.77■■■■□ 3.48
FOXA3-201ENST00000302177 BIVM-ERCC5R4GMW8 1640 aa36.68■■■■□ 3.46
FOXA3-201ENST00000302177 CLIP1P30622 1438 aa36.66■■■■□ 3.46
FOXA3-201ENST00000302177 VPS8Q8N3P4 1428 aa36.56■■■■□ 3.44
FOXA3-201ENST00000302177 RAPGEF2Q9Y4G8 1499 aa36.55■■■■□ 3.44
FOXA3-201ENST00000302177 NESP48681 1621 aa36.53■■■■□ 3.44
FOXA3-201ENST00000302177 TTBK1Q5TCY1 1321 aaPredicted RBP36.51■■■■□ 3.43
FOXA3-201ENST00000302177 ERICH3Q5RHP9 1530 aa36.47■■■■□ 3.43
FOXA3-201ENST00000302177 PRXQ9BXM0 1461 aa36.4■■■■□ 3.42
FOXA3-201ENST00000302177 CFTRP13569 1480 aa36.37■■■■□ 3.41
FOXA3-201ENST00000302177 CADPSQ9ULU8 1353 aa36.32■■■■□ 3.4
FOXA3-201ENST00000302177 APLP2Q06481 763 aa36.31■■■■□ 3.4
FOXA3-201ENST00000302177 CUX1P39880 1505 aa36.31■■■■□ 3.4
FOXA3-201ENST00000302177 LAMC3Q9Y6N6 1575 aa36.25■■■■□ 3.39
FOXA3-201ENST00000302177 KIF27Q86VH2 1401 aa36.23■■■■□ 3.39
FOXA3-201ENST00000302177 ERCC6Q03468 1493 aa36.23■■■■□ 3.39
FOXA3-201ENST00000302177 PRDM2Q13029 1718 aa36.2■■■■□ 3.39
FOXA3-201ENST00000302177 DIEXFQ68CQ4 756 aaKnown RBP36.13■■■■□ 3.37
FOXA3-201ENST00000302177 PDS5BQ9NTI5 1447 aa36.08■■■■□ 3.37
FOXA3-201ENST00000302177 ARAP1Q96P48 1450 aa36.07■■■■□ 3.36
FOXA3-201ENST00000302177 HNRNPUL2Q1KMD3 747 aaKnown RBP36.04■■■■□ 3.36
FOXA3-201ENST00000302177 ZNF316A6NFI3 1004 aaPredicted RBP35.99■■■■□ 3.35
FOXA3-201ENST00000302177 KIF21AQ7Z4S6 1674 aa35.97■■■■□ 3.35
FOXA3-201ENST00000302177 SCAF1Q9H7N4 1312 aaKnown RBP35.94■■■■□ 3.34
FOXA3-201ENST00000302177 RANGAP1P46060 587 aaPredicted RBP35.93■■■■□ 3.34
FOXA3-201ENST00000302177 FANCD2Q9BXW9 1451 aa35.9■■■■□ 3.34
FOXA3-201ENST00000302177 CLSPNQ9HAW4 1339 aa35.84■■■■□ 3.33
FOXA3-201ENST00000302177 ACIN1Q9UKV3 1341 aaKnown RBP35.82■■■■□ 3.32
FOXA3-201ENST00000302177 IGF1RP08069 1367 aa35.79■■■■□ 3.32
FOXA3-201ENST00000302177 ARHGAP35Q9NRY4 1499 aa35.79■■■■□ 3.32
FOXA3-201ENST00000302177 CUX2O14529 1486 aa35.76■■■■□ 3.32
FOXA3-201ENST00000302177 RRBP1Q9P2E9 1410 aaKnown RBP35.76■■■■□ 3.32
FOXA3-201ENST00000302177 THOC2Q8NI27 1593 aaKnown RBP35.75■■■■□ 3.31
FOXA3-201ENST00000302177 CENPBP07199 599 aaPredicted RBP35.73■■■■□ 3.31
FOXA3-201ENST00000302177 KANK4Q5T7N3 995 aaPredicted RBP35.72■■■■□ 3.31
FOXA3-201ENST00000302177 MRC2Q9UBG0 1479 aa35.69■■■■□ 3.3
FOXA3-201ENST00000302177 FGD5Q6ZNL6 1462 aa35.67■■■■□ 3.3
FOXA3-201ENST00000302177 MAP3K1Q13233 1512 aa35.64■■■■□ 3.3
FOXA3-201ENST00000302177 CARMIL1Q5VZK9 1371 aa35.62■■■■□ 3.29
FOXA3-201ENST00000302177 NEUROD1Q13562 356 aa35.62■■■■□ 3.29
FOXA3-201ENST00000302177 DHX57Q6P158 1386 aaKnown RBP35.58■■■■□ 3.29
FOXA3-201ENST00000302177 URB2Q14146 1524 aaKnown RBP35.54■■■■□ 3.28
FOXA3-201ENST00000302177 WDR62O43379 1518 aa35.53■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms