Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.81■□□□□ 0.44
PCDHB3Q9Y5E6 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 TPM4P1-201ENST00000436100 807 ntBASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 RASA4DP-201ENST00000460726 1199 ntBASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 AC083849.1-201ENST00000615227 514 ntBASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
PCDHB3Q9Y5E6 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 AC024243.1-201ENST00000609234 778 ntBASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 AL691432.3-201ENST00000621860 400 ntBASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PCDHB3Q9Y5E6 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 HEIH-201ENST00000623091 1652 ntBASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 SERPINA7P1-201ENST00000443077 631 ntBASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 AC112497.1-201ENST00000624824 639 ntBASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 KRT8P7-201ENST00000533003 1432 ntBASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PCDHB3Q9Y5E6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms