RNA–Protein interactions for RNA: ENST00000374512.7

PHF1-201, Transcript of PHD finger protein 1, humanhuman

TSL 1 (best) BASIC

Gene PHF1, Length 2,224 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF1-201ENST00000374512 NISCHQ9Y2I1 1504 aa37.46■■■■□ 3.59
PHF1-201ENST00000374512 CCDC180Q9P1Z9 1646 aa32.27■■■□□ 2.76
PHF1-201ENST00000374512 ZCCHC6Q5VYS8 1495 aaKnown RBP31.61■■■□□ 2.65
PHF1-201ENST00000374512 SHROOM4Q9ULL8 1493 aa31.41■■■□□ 2.62
PHF1-201ENST00000374512 DCAF1Q9Y4B6 1507 aa30.93■■■□□ 2.54
PHF1-201ENST00000374512 DCAF8L2P0C7V8 631 aa30.82■■■□□ 2.52
PHF1-201ENST00000374512 SUPT5HO00267 1087 aaKnown RBP30.75■■■□□ 2.51
PHF1-201ENST00000374512 MYO15BQ96JP2 1530 aa30.26■■■□□ 2.43
PHF1-201ENST00000374512 CHIC1Q5VXU3 224 aa30.1■■■□□ 2.41
PHF1-201ENST00000374512 ABCC9O60706 1549 aa29.95■■■□□ 2.38
PHF1-201ENST00000374512 NACADO15069 1562 aa29.89■■■□□ 2.38
PHF1-201ENST00000374512 SCRIBQ14160 1630 aa29.87■■■□□ 2.37
PHF1-201ENST00000374512 HRCP23327 699 aa29.52■■■□□ 2.32
PHF1-201ENST00000374512 RB1CC1Q8TDY2 1594 aa29.47■■■□□ 2.31
PHF1-201ENST00000374512 RSF1Q96T23 1441 aaPredicted RBP29.39■■■□□ 2.3
PHF1-201ENST00000374512 PCGF6Q9BYE7 350 aa29.21■■■□□ 2.27
PHF1-201ENST00000374512 CECR2Q9BXF3 1484 aa29.1■■■□□ 2.25
PHF1-201ENST00000374512 LOC105371045A0A1W2PR82 267 aa29.03■■■□□ 2.24
PHF1-201ENST00000374512 MROH2BQ7Z745 1585 aa29■■■□□ 2.23
PHF1-201ENST00000374512 UNC13AQ9UPW8 1703 aa28.98■■■□□ 2.23
PHF1-201ENST00000374512 BAZ1AQ9NRL2 1556 aaPredicted RBP28.86■■■□□ 2.21
PHF1-201ENST00000374512 TRIM26Q12899 539 aaPredicted RBP28.84■■■□□ 2.21
PHF1-201ENST00000374512 WIZO95785 1651 aa28.83■■■□□ 2.21
PHF1-201ENST00000374512 TRIM41Q8WV44 630 aa28.76■■■□□ 2.19
PHF1-201ENST00000374512 SMARCA4P51532 1647 aa28.65■■■□□ 2.18
PHF1-201ENST00000374512 BICRAQ9NZM4 1560 aa28.6■■■□□ 2.17
PHF1-201ENST00000374512 PPARGC1BQ86YN6 1023 aaKnown RBP28.57■■■□□ 2.16
PHF1-201ENST00000374512 TOP2AP11388 1531 aaKnown RBP28.49■■■□□ 2.15
PHF1-201ENST00000374512 ZEB1P37275 1124 aaPredicted RBP28.45■■■□□ 2.14
PHF1-201ENST00000374512 PABPN1Q86U42 306 aaKnown RBP eCLIP28.43■■■□□ 2.145e-7■■■□□ 18
PHF1-201ENST00000374512 EIF4G1Q04637 1599 aaKnown RBP28.39■■■□□ 2.13
PHF1-201ENST00000374512 FAM9AQ8IZU1 332 aaPredicted RBP28.37■■■□□ 2.13
PHF1-201ENST00000374512 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
PHF1-201ENST00000374512 CCDC88BA6NC98 1476 aa28.25■■■□□ 2.11
PHF1-201ENST00000374512 PEG3Q9GZU2 1588 aa28.23■■■□□ 2.11
PHF1-201ENST00000374512 EHMT2Q96KQ7 1210 aa28.02■■■□□ 2.08
PHF1-201ENST00000374512 ABCC8Q09428 1581 aa28.01■■■□□ 2.08
PHF1-201ENST00000374512 ATAD2BQ9ULI0 1458 aa27.99■■■□□ 2.07
PHF1-201ENST00000374512 BAZ1BQ9UIG0 1483 aaKnown RBP27.88■■■□□ 2.05
PHF1-201ENST00000374512 WRNQ14191 1432 aaPredicted RBP eCLIP27.78■■■□□ 2.04
PHF1-201ENST00000374512 EEA1Q15075 1411 aa27.76■■■□□ 2.03
PHF1-201ENST00000374512 SOGA1O94964 1423 aa27.7■■■□□ 2.03
PHF1-201ENST00000374512 TNIKQ9UKE5 1360 aa27.64■■■□□ 2.02
PHF1-201ENST00000374512 HMGXB3Q12766 1538 aa27.61■■■□□ 2.01
PHF1-201ENST00000374512 NCAPD3P42695 1498 aa27.6■■■□□ 2.01
PHF1-201ENST00000374512 CEP162Q5TB80 1403 aa27.59■■■□□ 2.01
PHF1-201ENST00000374512 CSRNP3Q8WYN3 585 aa27.58■■■□□ 2.01
PHF1-201ENST00000374512 RUSC2Q8N2Y8 1516 aa27.55■■■□□ 2
PHF1-201ENST00000374512 SYNJ1O43426 1573 aa27.49■■□□□ 1.99
PHF1-201ENST00000374512 CCER1Q8TC90 406 aaPredicted RBP27.48■■□□□ 1.99
PHF1-201ENST00000374512 GOLGA3Q08378 1498 aa27.47■■□□□ 1.99
PHF1-201ENST00000374512 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.43■■□□□ 1.98
PHF1-201ENST00000374512 UBTFP17480 764 aaKnown RBP27.4■■□□□ 1.98
PHF1-201ENST00000374512 KIF21BO75037 1637 aa27.35■■□□□ 1.97
PHF1-201ENST00000374512 CEP164Q9UPV0 1460 aa27.35■■□□□ 1.97
PHF1-201ENST00000374512 TOP2BQ02880 1626 aa27.3■■□□□ 1.96
PHF1-201ENST00000374512 BIVM-ERCC5R4GMW8 1640 aa27.25■■□□□ 1.95
PHF1-201ENST00000374512 CFTRP13569 1480 aa27.21■■□□□ 1.95
PHF1-201ENST00000374512 PELP1Q8IZL8 1130 aaKnown RBP27.18■■□□□ 1.94
PHF1-201ENST00000374512 SCAF1Q9H7N4 1312 aaKnown RBP27.16■■□□□ 1.94
PHF1-201ENST00000374512 PRDM2Q13029 1718 aa27.12■■□□□ 1.93
PHF1-201ENST00000374512 TTBK1Q5TCY1 1321 aaPredicted RBP27.11■■□□□ 1.93
PHF1-201ENST00000374512 CC2D2AQ9P2K1 1620 aa27.1■■□□□ 1.93
PHF1-201ENST00000374512 CLIP1P30622 1438 aa27.1■■□□□ 1.93
PHF1-201ENST00000374512 RAPGEF2Q9Y4G8 1499 aa27.08■■□□□ 1.92
PHF1-201ENST00000374512 DIEXFQ68CQ4 756 aaKnown RBP27.06■■□□□ 1.92
PHF1-201ENST00000374512 CUX1P39880 1505 aa27.06■■□□□ 1.92
PHF1-201ENST00000374512 VPS8Q8N3P4 1428 aa27.03■■□□□ 1.92
PHF1-201ENST00000374512 ACIN1Q9UKV3 1341 aaKnown RBP26.99■■□□□ 1.91
PHF1-201ENST00000374512 CADPSQ9ULU8 1353 aa26.97■■□□□ 1.91
PHF1-201ENST00000374512 ERICH3Q5RHP9 1530 aa26.95■■□□□ 1.91
PHF1-201ENST00000374512 CENPBP07199 599 aaPredicted RBP26.91■■□□□ 1.9
PHF1-201ENST00000374512 PRXQ9BXM0 1461 aa26.9■■□□□ 1.9
PHF1-201ENST00000374512 ZNF316A6NFI3 1004 aaPredicted RBP26.89■■□□□ 1.89
PHF1-201ENST00000374512 KIF27Q86VH2 1401 aa26.86■■□□□ 1.89
PHF1-201ENST00000374512 APLP2Q06481 763 aa26.85■■□□□ 1.89
PHF1-201ENST00000374512 NEUROD1Q13562 356 aa26.81■■□□□ 1.88
PHF1-201ENST00000374512 RANGAP1P46060 587 aaPredicted RBP26.74■■□□□ 1.87
PHF1-201ENST00000374512 HNRNPUL2Q1KMD3 747 aaKnown RBP26.71■■□□□ 1.87
PHF1-201ENST00000374512 FANCD2Q9BXW9 1451 aa26.68■■□□□ 1.86
PHF1-201ENST00000374512 ARAP1Q96P48 1450 aa26.68■■□□□ 1.86
PHF1-201ENST00000374512 CLSPNQ9HAW4 1339 aa26.66■■□□□ 1.86
PHF1-201ENST00000374512 FGD5Q6ZNL6 1462 aa26.65■■□□□ 1.86
PHF1-201ENST00000374512 CUX2O14529 1486 aa26.63■■□□□ 1.85
PHF1-201ENST00000374512 GTF3C3Q9Y5Q9 886 aa26.58■■□□□ 1.85
PHF1-201ENST00000374512 DNMBPQ6XZF7 1577 aa26.56■■□□□ 1.84
PHF1-201ENST00000374512 IGF1RP08069 1367 aa26.55■■□□□ 1.84
PHF1-201ENST00000374512 LAMC3Q9Y6N6 1575 aa26.54■■□□□ 1.84
PHF1-201ENST00000374512 NESP48681 1621 aa26.54■■□□□ 1.84
PHF1-201ENST00000374512 ARHGAP35Q9NRY4 1499 aa26.49■■□□□ 1.83
PHF1-201ENST00000374512 TOPBP1Q92547 1522 aa26.48■■□□□ 1.83
PHF1-201ENST00000374512 RRBP1Q9P2E9 1410 aaKnown RBP26.46■■□□□ 1.83
PHF1-201ENST00000374512 CARMIL1Q5VZK9 1371 aa26.44■■□□□ 1.82
PHF1-201ENST00000374512 POLA1P09884 1462 aaPredicted RBP26.41■■□□□ 1.82
PHF1-201ENST00000374512 KANK4Q5T7N3 995 aaPredicted RBP26.41■■□□□ 1.82
PHF1-201ENST00000374512 DHX57Q6P158 1386 aaKnown RBP26.41■■□□□ 1.82
PHF1-201ENST00000374512 ABCA10Q8WWZ4 1543 aa26.41■■□□□ 1.82
PHF1-201ENST00000374512 MIER1Q8N108 512 aa26.39■■□□□ 1.81
PHF1-201ENST00000374512 RAD54L2Q9Y4B4 1467 aa26.36■■□□□ 1.81
PHF1-201ENST00000374512 PDS5BQ9NTI5 1447 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms