RNA–Protein interactions for RNA: ENST00000377902.5

GNE-201, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 2,565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-201ENST00000377902 NISCHQ9Y2I1 1504 aa36■■■■□ 3.35
GNE-201ENST00000377902 SHROOM4Q9ULL8 1493 aa31.46■■■□□ 2.63
GNE-201ENST00000377902 SUPT5HO00267 1087 aaKnown RBP31.04■■■□□ 2.56
GNE-201ENST00000377902 ZCCHC6Q5VYS8 1495 aaKnown RBP30.5■■■□□ 2.47
GNE-201ENST00000377902 MYO15BQ96JP2 1530 aa30.31■■■□□ 2.44
GNE-201ENST00000377902 CHIC1Q5VXU3 224 aa30.23■■■□□ 2.43
GNE-201ENST00000377902 DCAF8L2P0C7V8 631 aa30.19■■■□□ 2.42
GNE-201ENST00000377902 CCDC180Q9P1Z9 1646 aa30.17■■■□□ 2.42
GNE-201ENST00000377902 HRCP23327 699 aa30.05■■■□□ 2.4
GNE-201ENST00000377902 PCGF6Q9BYE7 350 aa29.9■■■□□ 2.38
GNE-201ENST00000377902 PPARGC1BQ86YN6 1023 aaKnown RBP29.63■■■□□ 2.33
GNE-201ENST00000377902 LOC105371045A0A1W2PR82 267 aa29.57■■■□□ 2.32
GNE-201ENST00000377902 DCAF1Q9Y4B6 1507 aa29.3■■■□□ 2.28
GNE-201ENST00000377902 TRIM26Q12899 539 aaPredicted RBP29.02■■■□□ 2.24
GNE-201ENST00000377902 ABCC9O60706 1549 aa28.85■■■□□ 2.21
GNE-201ENST00000377902 RSF1Q96T23 1441 aaPredicted RBP28.76■■■□□ 2.19
GNE-201ENST00000377902 FAM9AQ8IZU1 332 aaPredicted RBP28.73■■■□□ 2.19
GNE-201ENST00000377902 TRIM41Q8WV44 630 aa28.72■■■□□ 2.19
GNE-201ENST00000377902 SCRIBQ14160 1630 aa28.71■■■□□ 2.19
GNE-201ENST00000377902 EHMT2Q96KQ7 1210 aa28.66■■■□□ 2.18
GNE-201ENST00000377902 RB1CC1Q8TDY2 1594 aa28.56■■■□□ 2.16
GNE-201ENST00000377902 ZEB1P37275 1124 aaPredicted RBP28.42■■■□□ 2.14
GNE-201ENST00000377902 CECR2Q9BXF3 1484 aa28.25■■■□□ 2.11
GNE-201ENST00000377902 MROH2BQ7Z745 1585 aa28.13■■■□□ 2.09
GNE-201ENST00000377902 SCAF1Q9H7N4 1312 aaKnown RBP28.09■■■□□ 2.09
GNE-201ENST00000377902 WIZO95785 1651 aa28.02■■■□□ 2.08
GNE-201ENST00000377902 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.99■■■□□ 2.07
GNE-201ENST00000377902 NACADO15069 1562 aa27.86■■■□□ 2.05
GNE-201ENST00000377902 CCER1Q8TC90 406 aaPredicted RBP27.83■■■□□ 2.05
GNE-201ENST00000377902 TTBK1Q5TCY1 1321 aaPredicted RBP27.81■■■□□ 2.04
GNE-201ENST00000377902 BAZ1AQ9NRL2 1556 aaPredicted RBP27.69■■■□□ 2.02
GNE-201ENST00000377902 EIF4G1Q04637 1599 aaKnown RBP27.67■■■□□ 2.02
GNE-201ENST00000377902 PELP1Q8IZL8 1130 aaKnown RBP27.66■■■□□ 2.02
GNE-201ENST00000377902 ABCC8Q09428 1581 aa27.63■■■□□ 2.01
GNE-201ENST00000377902 NEUROD1Q13562 356 aa27.6■■■□□ 2.01
GNE-201ENST00000377902 CCDC88BA6NC98 1476 aa27.59■■■□□ 2.01
GNE-201ENST00000377902 ACIN1Q9UKV3 1341 aaKnown RBP27.55■■■□□ 2
GNE-201ENST00000377902 DIEXFQ68CQ4 756 aaKnown RBP27.52■■■□□ 2
GNE-201ENST00000377902 SOGA1O94964 1423 aa27.48■■□□□ 1.99
GNE-201ENST00000377902 CEP162Q5TB80 1403 aa27.46■■□□□ 1.99
GNE-201ENST00000377902 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
GNE-201ENST00000377902 TOP2AP11388 1531 aaKnown RBP27.41■■□□□ 1.98
GNE-201ENST00000377902 RUSC2Q8N2Y8 1516 aa27.36■■□□□ 1.97
GNE-201ENST00000377902 GTF3C3Q9Y5Q9 886 aa27.35■■□□□ 1.97
GNE-201ENST00000377902 SMARCA2P51531 1590 aa27.35■■□□□ 1.97
GNE-201ENST00000377902 UBTFP17480 764 aaKnown RBP27.34■■□□□ 1.97
GNE-201ENST00000377902 SMARCA4P51532 1647 aa27.31■■□□□ 1.96
GNE-201ENST00000377902 TNIKQ9UKE5 1360 aa27.3■■□□□ 1.96
GNE-201ENST00000377902 CSRNP3Q8WYN3 585 aa27.29■■□□□ 1.96
GNE-201ENST00000377902 CENPBP07199 599 aaPredicted RBP27.22■■□□□ 1.95
GNE-201ENST00000377902 ZNF316A6NFI3 1004 aaPredicted RBP27.13■■□□□ 1.93
GNE-201ENST00000377902 HNRNPUL2Q1KMD3 747 aaKnown RBP27.09■■□□□ 1.93
GNE-201ENST00000377902 UNC13AQ9UPW8 1703 aa27.09■■□□□ 1.93
GNE-201ENST00000377902 YTHDC1Q96MU7 727 aaKnown RBP27.08■■□□□ 1.93
GNE-201ENST00000377902 EEA1Q15075 1411 aa27.07■■□□□ 1.92
GNE-201ENST00000377902 GOLGA3Q08378 1498 aa27.05■■□□□ 1.92
GNE-201ENST00000377902 PABPN1Q86U42 306 aaKnown RBP eCLIP27.04■■□□□ 1.92
GNE-201ENST00000377902 MIER1Q8N108 512 aa26.94■■□□□ 1.9
GNE-201ENST00000377902 RANGAP1P46060 587 aaPredicted RBP26.93■■□□□ 1.9
GNE-201ENST00000377902 SYNJ1O43426 1573 aa26.86■■□□□ 1.89
GNE-201ENST00000377902 CLIP1P30622 1438 aa26.84■■□□□ 1.89
GNE-201ENST00000377902 CEP164Q9UPV0 1460 aa26.83■■□□□ 1.89
GNE-201ENST00000377902 KIF21BO75037 1637 aa26.74■■□□□ 1.87
GNE-201ENST00000377902 RAPGEF2Q9Y4G8 1499 aa26.73■■□□□ 1.87
GNE-201ENST00000377902 BICRAQ9NZM4 1560 aa26.73■■□□□ 1.87
GNE-201ENST00000377902 VPS8Q8N3P4 1428 aa26.73■■□□□ 1.87
GNE-201ENST00000377902 APLP2Q06481 763 aa26.72■■□□□ 1.87
GNE-201ENST00000377902 PEG3Q9GZU2 1588 aa26.63■■□□□ 1.85
GNE-201ENST00000377902 BAZ1BQ9UIG0 1483 aaKnown RBP26.55■■□□□ 1.84
GNE-201ENST00000377902 ATAD2BQ9ULI0 1458 aa26.55■■□□□ 1.84
GNE-201ENST00000377902 KANK4Q5T7N3 995 aaPredicted RBP26.47■■□□□ 1.83
GNE-201ENST00000377902 DHX57Q6P158 1386 aaKnown RBP26.44■■□□□ 1.82
GNE-201ENST00000377902 TOP2BQ02880 1626 aa26.37■■□□□ 1.81
GNE-201ENST00000377902 ARAP1Q96P48 1450 aa26.35■■□□□ 1.81
GNE-201ENST00000377902 PRXQ9BXM0 1461 aa26.28■■□□□ 1.8
GNE-201ENST00000377902 CLSPNQ9HAW4 1339 aa26.27■■□□□ 1.8
GNE-201ENST00000377902 ITGAEP38570 1179 aa26.26■■□□□ 1.79
GNE-201ENST00000377902 MYT1Q01538 1121 aa26.26■■□□□ 1.79
GNE-201ENST00000377902 BIVM-ERCC5R4GMW8 1640 aa26.21■■□□□ 1.79
GNE-201ENST00000377902 ERICH3Q5RHP9 1530 aa26.2■■□□□ 1.79
GNE-201ENST00000377902 SUPT16HQ9Y5B9 1047 aaKnown RBP26.19■■□□□ 1.78
GNE-201ENST00000377902 RRBP1Q9P2E9 1410 aaKnown RBP26.15■■□□□ 1.78
GNE-201ENST00000377902 CUX1P39880 1505 aa26.12■■□□□ 1.77
GNE-201ENST00000377902 KCNH8Q96L42 1107 aa26.11■■□□□ 1.77
GNE-201ENST00000377902 CCNB3Q8WWL7 1395 aa26.09■■□□□ 1.77
GNE-201ENST00000377902 KIF27Q86VH2 1401 aa26.06■■□□□ 1.76
GNE-201ENST00000377902 ARHGAP35Q9NRY4 1499 aa26.06■■□□□ 1.76
GNE-201ENST00000377902 CUX2O14529 1486 aa26■■□□□ 1.75
GNE-201ENST00000377902 RAB3GAP2Q9H2M9 1393 aa25.98■■□□□ 1.75
GNE-201ENST00000377902 MAPKBP1O60336 1514 aa25.91■■□□□ 1.74
GNE-201ENST00000377902 SIN3AQ96ST3 1273 aa25.89■■□□□ 1.74
GNE-201ENST00000377902 TSHZ2Q9NRE2 1034 aa25.88■■□□□ 1.73
GNE-201ENST00000377902 NCAPD3P42695 1498 aa25.87■■□□□ 1.73
GNE-201ENST00000377902 DDX10Q13206 875 aaKnown RBP25.84■■□□□ 1.73
GNE-201ENST00000377902 CFTRP13569 1480 aa25.83■■□□□ 1.73
GNE-201ENST00000377902 BCANQ96GW7 911 aa25.83■■□□□ 1.72
GNE-201ENST00000377902 IGF1RP08069 1367 aa25.83■■□□□ 1.72
GNE-201ENST00000377902 FAM50AQ14320 339 aaKnown RBP25.82■■□□□ 1.72
GNE-201ENST00000377902 HMGXB3Q12766 1538 aa25.82■■□□□ 1.72
GNE-201ENST00000377902 HIRIP3Q9BW71 556 aaPredicted RBP25.81■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms