RNA–Protein interactions for RNA: ENST00000245817.4

TNFSF9-201, Transcript of TNF superfamily member 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFSF9, Length 1,665 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9-201ENST00000245817 NISCHQ9Y2I1 1504 aa42.37■■■■■ 4.37
TNFSF9-201ENST00000245817 CCDC180Q9P1Z9 1646 aa37■■■■□ 3.51
TNFSF9-201ENST00000245817 ABCC9O60706 1549 aa35.79■■■■□ 3.32
TNFSF9-201ENST00000245817 ZCCHC6Q5VYS8 1495 aaKnown RBP35.55■■■■□ 3.28
TNFSF9-201ENST00000245817 DCAF8L2P0C7V8 631 aa35.23■■■■□ 3.23
TNFSF9-201ENST00000245817 DCAF1Q9Y4B6 1507 aa35.03■■■■□ 3.2
TNFSF9-201ENST00000245817 NACADO15069 1562 aa34.71■■■■□ 3.15
TNFSF9-201ENST00000245817 MYO15BQ96JP2 1530 aa34.65■■■■□ 3.14
TNFSF9-201ENST00000245817 RB1CC1Q8TDY2 1594 aa34.62■■■■□ 3.13
TNFSF9-201ENST00000245817 SHROOM4Q9ULL8 1493 aa34.57■■■■□ 3.12
TNFSF9-201ENST00000245817 SCRIBQ14160 1630 aa34■■■■□ 3.03
TNFSF9-201ENST00000245817 UNC13AQ9UPW8 1703 aa33.82■■■■□ 3.01
TNFSF9-201ENST00000245817 PABPN1Q86U42 306 aaKnown RBP eCLIP33.58■■■□□ 2.97
TNFSF9-201ENST00000245817 BICRAQ9NZM4 1560 aa33.52■■■□□ 2.96
TNFSF9-201ENST00000245817 SUPT5HO00267 1087 aaKnown RBP33.28■■■□□ 2.92
TNFSF9-201ENST00000245817 CECR2Q9BXF3 1484 aa32.91■■■□□ 2.86
TNFSF9-201ENST00000245817 RSF1Q96T23 1441 aaPredicted RBP32.84■■■□□ 2.85
TNFSF9-201ENST00000245817 BAZ1AQ9NRL2 1556 aaPredicted RBP32.75■■■□□ 2.83
TNFSF9-201ENST00000245817 MROH2BQ7Z745 1585 aa32.7■■■□□ 2.83
TNFSF9-201ENST00000245817 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
TNFSF9-201ENST00000245817 SMARCA4P51532 1647 aa32.56■■■□□ 2.8
TNFSF9-201ENST00000245817 WIZO95785 1651 aa32.41■■■□□ 2.78
TNFSF9-201ENST00000245817 DNAJC5BQ9UF47 199 aa32.4■■■□□ 2.78
TNFSF9-201ENST00000245817 CC2D2AQ9P2K1 1620 aa32.37■■■□□ 2.77
TNFSF9-201ENST00000245817 PEG3Q9GZU2 1588 aa32.15■■■□□ 2.74
TNFSF9-201ENST00000245817 ATAD2BQ9ULI0 1458 aa32.12■■■□□ 2.73
TNFSF9-201ENST00000245817 TOP2AP11388 1531 aaKnown RBP32.12■■■□□ 2.73
TNFSF9-201ENST00000245817 SMARCA2P51531 1590 aa32.11■■■□□ 2.73
TNFSF9-201ENST00000245817 NCAPD3P42695 1498 aa32.03■■■□□ 2.72
TNFSF9-201ENST00000245817 BAZ1BQ9UIG0 1483 aaKnown RBP31.95■■■□□ 2.7
TNFSF9-201ENST00000245817 HMGXB3Q12766 1538 aa31.88■■■□□ 2.69
TNFSF9-201ENST00000245817 CCDC88BA6NC98 1476 aa31.81■■■□□ 2.68
TNFSF9-201ENST00000245817 CHIC1Q5VXU3 224 aa31.74■■■□□ 2.67
TNFSF9-201ENST00000245817 TRIM41Q8WV44 630 aa31.32■■■□□ 2.6
TNFSF9-201ENST00000245817 CADPSQ9ULU8 1353 aa31.16■■■□□ 2.58
TNFSF9-201ENST00000245817 CFTRP13569 1480 aa31.11■■■□□ 2.57
TNFSF9-201ENST00000245817 NESP48681 1621 aa31.1■■■□□ 2.57
TNFSF9-201ENST00000245817 LAMC3Q9Y6N6 1575 aa31.09■■■□□ 2.57
TNFSF9-201ENST00000245817 ABCC8Q09428 1581 aa31.06■■■□□ 2.56
TNFSF9-201ENST00000245817 WRNQ14191 1432 aaPredicted RBP eCLIP30.97■■■□□ 2.55
TNFSF9-201ENST00000245817 PDS5BQ9NTI5 1447 aa30.92■■■□□ 2.54
TNFSF9-201ENST00000245817 PRDM2Q13029 1718 aa30.83■■■□□ 2.53
TNFSF9-201ENST00000245817 ERCC6Q03468 1493 aa30.83■■■□□ 2.53
TNFSF9-201ENST00000245817 FANCD2Q9BXW9 1451 aa30.77■■■□□ 2.52
TNFSF9-201ENST00000245817 SYNJ1O43426 1573 aa30.74■■■□□ 2.51
TNFSF9-201ENST00000245817 KIF21AQ7Z4S6 1674 aa30.73■■■□□ 2.51
TNFSF9-201ENST00000245817 FAM9AQ8IZU1 332 aaPredicted RBP30.73■■■□□ 2.51
TNFSF9-201ENST00000245817 CEP164Q9UPV0 1460 aa30.68■■■□□ 2.5
TNFSF9-201ENST00000245817 TOP2BQ02880 1626 aa30.65■■■□□ 2.5
TNFSF9-201ENST00000245817 BIVM-ERCC5R4GMW8 1640 aa30.59■■■□□ 2.49
TNFSF9-201ENST00000245817 CUX1P39880 1505 aa30.59■■■□□ 2.49
TNFSF9-201ENST00000245817 LOC105371045A0A1W2PR82 267 aa30.53■■■□□ 2.48
TNFSF9-201ENST00000245817 MRC2Q9UBG0 1479 aa30.52■■■□□ 2.48
TNFSF9-201ENST00000245817 EEA1Q15075 1411 aa30.51■■■□□ 2.47
TNFSF9-201ENST00000245817 SOGA1O94964 1423 aa30.51■■■□□ 2.47
TNFSF9-201ENST00000245817 THOC2Q8NI27 1593 aaKnown RBP30.47■■■□□ 2.47
TNFSF9-201ENST00000245817 URB2Q14146 1524 aaKnown RBP30.41■■■□□ 2.46
TNFSF9-201ENST00000245817 CSRNP3Q8WYN3 585 aa30.38■■■□□ 2.45
TNFSF9-201ENST00000245817 WDR62O43379 1518 aa30.38■■■□□ 2.45
TNFSF9-201ENST00000245817 DNMBPQ6XZF7 1577 aa30.37■■■□□ 2.45
TNFSF9-201ENST00000245817 RUSC2Q8N2Y8 1516 aa30.36■■■□□ 2.45
TNFSF9-201ENST00000245817 TOPBP1Q92547 1522 aa30.33■■■□□ 2.45
TNFSF9-201ENST00000245817 FGD5Q6ZNL6 1462 aa30.31■■■□□ 2.44
TNFSF9-201ENST00000245817 EHMT2Q96KQ7 1210 aa30.3■■■□□ 2.44
TNFSF9-201ENST00000245817 CUX2O14529 1486 aa30.27■■■□□ 2.44
TNFSF9-201ENST00000245817 KIF27Q86VH2 1401 aa30.23■■■□□ 2.43
TNFSF9-201ENST00000245817 POLA1P09884 1462 aaPredicted RBP30.17■■■□□ 2.42
TNFSF9-201ENST00000245817 RAD54L2Q9Y4B4 1467 aa30.08■■■□□ 2.41
TNFSF9-201ENST00000245817 GOLGA3Q08378 1498 aa30.06■■■□□ 2.4
TNFSF9-201ENST00000245817 ABCA10Q8WWZ4 1543 aa30.04■■■□□ 2.4
TNFSF9-201ENST00000245817 UBTFP17480 764 aaKnown RBP30.04■■■□□ 2.4
TNFSF9-201ENST00000245817 IFT140Q96RY7 1462 aa30.02■■■□□ 2.4
TNFSF9-201ENST00000245817 KIF21BO75037 1637 aa30.02■■■□□ 2.4
TNFSF9-201ENST00000245817 TNIKQ9UKE5 1360 aa29.95■■■□□ 2.38
TNFSF9-201ENST00000245817 TARBP1Q13395 1621 aaKnown RBP29.93■■■□□ 2.38
TNFSF9-201ENST00000245817 IGF1RP08069 1367 aa29.93■■■□□ 2.38
TNFSF9-201ENST00000245817 PRXQ9BXM0 1461 aa29.92■■■□□ 2.38
TNFSF9-201ENST00000245817 RAPGEF2Q9Y4G8 1499 aa29.89■■■□□ 2.37
TNFSF9-201ENST00000245817 ERICH3Q5RHP9 1530 aa29.86■■■□□ 2.37
TNFSF9-201ENST00000245817 TDRD9Q8NDG6 1382 aaKnown RBP29.84■■■□□ 2.37
TNFSF9-201ENST00000245817 ZNF608Q9ULD9 1512 aaPredicted RBP29.83■■■□□ 2.37
TNFSF9-201ENST00000245817 WDR97A6NE52 1622 aa29.83■■■□□ 2.37
TNFSF9-201ENST00000245817 CARMIL1Q5VZK9 1371 aa29.81■■■□□ 2.36
TNFSF9-201ENST00000245817 GAPVD1Q14C86 1478 aa29.79■■■□□ 2.36
TNFSF9-201ENST00000245817 AQRO60306 1485 aaKnown RBP eCLIP29.77■■■□□ 2.364e-7■■■■■ 40.5
TNFSF9-201ENST00000245817 CEP162Q5TB80 1403 aa29.76■■■□□ 2.36
TNFSF9-201ENST00000245817 ABCA5Q8WWZ7 1642 aa29.74■■■□□ 2.35
TNFSF9-201ENST00000245817 EIF4G3O43432 1585 aaKnown RBP29.71■■■□□ 2.35
TNFSF9-201ENST00000245817 CUL7Q14999 1698 aa29.67■■■□□ 2.34
TNFSF9-201ENST00000245817 GRIN2BQ13224 1484 aa29.6■■■□□ 2.33
TNFSF9-201ENST00000245817 CLIP1P30622 1438 aa29.58■■■□□ 2.33
TNFSF9-201ENST00000245817 RANGAP1P46060 587 aaPredicted RBP29.56■■■□□ 2.32
TNFSF9-201ENST00000245817 PBRM1Q86U86 1689 aa29.54■■■□□ 2.32
TNFSF9-201ENST00000245817 FHAD1B1AJZ9 1412 aa29.48■■■□□ 2.31
TNFSF9-201ENST00000245817 SNAPC4Q5SXM2 1469 aa29.47■■■□□ 2.31
TNFSF9-201ENST00000245817 MAGI1Q96QZ7 1491 aaPredicted RBP29.46■■■□□ 2.31
TNFSF9-201ENST00000245817 FBLN2P98095 1184 aa29.4■■■□□ 2.3
TNFSF9-201ENST00000245817 CHMP7Q8WUX9 453 aaPredicted RBP29.38■■■□□ 2.29
TNFSF9-201ENST00000245817 ADAMTS12P58397 1594 aa29.38■■■□□ 2.29
TNFSF9-201ENST00000245817 SYNJ2O15056 1496 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms