Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ASGR1-207ENST00000574330 887 ntTSL 520.42■□□□□ 0.862e-82■□□□□ 10.1
DDX55Q8NHQ9 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.382e-82■□□□□ 10.1
DDX55Q8NHQ9 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC16.66■□□□□ 0.262e-82■□□□□ 10.1
DDX55Q8NHQ9 RPS19-207ENST00000600467 420 ntTSL 225.5■■□□□ 1.675e-17■□□□□ 10.1
DDX55Q8NHQ9 RPS19-204ENST00000598399 1172 ntTSL 516.16■□□□□ 0.185e-17■□□□□ 10.1
DDX55Q8NHQ9 RPS19-203ENST00000598261 307 ntTSL 314.79□□□□□ -0.045e-17■□□□□ 10.1
DDX55Q8NHQ9 RPS19-205ENST00000598466 601 ntTSL 213.81□□□□□ -0.25e-17■□□□□ 10.1
DDX55Q8NHQ9 RPS19-208ENST00000601492 342 ntTSL 510.41□□□□□ -0.745e-17■□□□□ 10.1
DDX55Q8NHQ9 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.021e-13■□□□□ 10.1
DDX55Q8NHQ9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC21.12■□□□□ 0.971e-13■□□□□ 10.1
DDX55Q8NHQ9 UXT-203ENST00000376964 894 ntTSL 218.64■□□□□ 0.571e-13■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-208ENST00000487245 1880 nt27.96■■■□□ 2.072e-7■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-202ENST00000376237 1538 nt26.86■■□□□ 1.892e-7■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC24.72■■□□□ 1.552e-7■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.59■■□□□ 1.532e-7■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-205ENST00000466892 754 nt19.39■□□□□ 0.692e-7■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-210ENST00000640219 976 ntBASIC17.46■□□□□ 0.392e-7■□□□□ 10.1
DDX55Q8NHQ9 HLA-C-206ENST00000470363 1279 nt14.36□□□□□ -0.112e-7■□□□□ 10.1
DDX55Q8NHQ9 SLC38A3-206ENST00000614032 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.423e-14■□□□□ 10.1
DDX55Q8NHQ9 UBL5-204ENST00000588595 546 ntTSL 225.29■■□□□ 1.649e-18■□□□□ 10.1
DDX55Q8NHQ9 UBL5-203ENST00000588141 573 ntTSL 425.29■■□□□ 1.649e-18■□□□□ 10.1
DDX55Q8NHQ9 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.438e-14■□□□□ 10.1
DDX55Q8NHQ9 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.338e-14■□□□□ 10.1
DDX55Q8NHQ9 UBL5-206ENST00000589960 307 ntTSL 322.4■■□□□ 1.188e-14■□□□□ 10.1
DDX55Q8NHQ9 UBL5-205ENST00000589372 1450 ntTSL 222.09■■□□□ 1.138e-14■□□□□ 10.1
DDX55Q8NHQ9 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.25■□□□□ 0.518e-14■□□□□ 10.1
DDX55Q8NHQ9 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.438e-14■□□□□ 10.1
DDX55Q8NHQ9 RPS27L-207ENST00000559763 244 ntTSL 37.63□□□□□ -1.194e-6■□□□□ 10.1
DDX55Q8NHQ9 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7□□□□□ -1.291e-14■□□□□ 10.1
DDX55Q8NHQ9 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.291e-14■□□□□ 10.1
DDX55Q8NHQ9 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.96□□□□□ -1.461e-14■□□□□ 10.1
DDX55Q8NHQ9 NDUFA13-206ENST00000511584 640 ntTSL 218.07■□□□□ 0.482e-9■□□□□ 10.1
DDX55Q8NHQ9 SON-208ENST00000455528 8394 ntTSL 1 (best)13.46□□□□□ -0.263e-6■□□□□ 10.1
DDX55Q8NHQ9 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC12.52□□□□□ -0.413e-6■□□□□ 10.1
DDX55Q8NHQ9 SON-217ENST00000478183 1818 ntTSL 1 (best)10.41□□□□□ -0.743e-6■□□□□ 10.1
DDX55Q8NHQ9 SON-207ENST00000436227 5269 ntAPPRIS P1 TSL 59.01□□□□□ -0.973e-6■□□□□ 10.1
DDX55Q8NHQ9 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC6.61□□□□□ -1.353e-6■□□□□ 10.1
DDX55Q8NHQ9 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.355e-6■□□□□ 10.1
DDX55Q8NHQ9 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.465e-6■□□□□ 10.1
DDX55Q8NHQ9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.541e-6■□□□□ 10.1
DDX55Q8NHQ9 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.321e-6■□□□□ 10.1
DDX55Q8NHQ9 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.291e-6■□□□□ 10.1
DDX55Q8NHQ9 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.161e-6■□□□□ 10.1
DDX55Q8NHQ9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC24.46■■□□□ 1.512e-7■□□□□ 10.1
DDX55Q8NHQ9 CTDSP2-202ENST00000547169 1340 ntTSL 218.75■□□□□ 0.592e-7■□□□□ 10.1
DDX55Q8NHQ9 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.442e-7■□□□□ 10.1
DDX55Q8NHQ9 CTDSP2-205ENST00000549039 797 ntTSL 215.18■□□□□ 0.022e-7■□□□□ 10.1
DDX55Q8NHQ9 RPS3-220ENST00000534555 387 ntTSL 320.14■□□□□ 0.814e-32■□□□□ 10.1
DDX55Q8NHQ9 RPS3-208ENST00000527273 390 ntTSL 314.42□□□□□ -0.14e-32■□□□□ 10.1
DDX55Q8NHQ9 RPS3-214ENST00000530164 1878 ntTSL 1 (best) BASIC11.08□□□□□ -0.644e-32■□□□□ 10.1
DDX55Q8NHQ9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.261e-14■□□□□ 10.1
DDX55Q8NHQ9 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.781e-14■□□□□ 10.1
DDX55Q8NHQ9 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41e-14■□□□□ 10.1
DDX55Q8NHQ9 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.37e-7■□□□□ 10
DDX55Q8NHQ9 CHD3-204ENST00000439235 1263 ntTSL 524.22■■□□□ 1.472e-6■□□□□ 10
DDX55Q8NHQ9 C21orf59-206ENST00000440966 1082 ntTSL 323.31■■□□□ 1.323e-6■□□□□ 10
DDX55Q8NHQ9 C21orf59-202ENST00000300260 1243 ntTSL 221.65■■□□□ 1.063e-6■□□□□ 10
DDX55Q8NHQ9 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.983e-6■□□□□ 10
DDX55Q8NHQ9 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC20.16■□□□□ 0.823e-6■□□□□ 10
DDX55Q8NHQ9 CHD3-205ENST00000449744 880 ntTSL 218.82■□□□□ 0.62e-6■□□□□ 10
DDX55Q8NHQ9 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC14.89□□□□□ -0.033e-6■□□□□ 10
DDX55Q8NHQ9 EXOC4-208ENST00000468932 753 ntTSL 314.52□□□□□ -0.091e-12■□□□□ 10
DDX55Q8NHQ9 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC13.6□□□□□ -0.232e-6■□□□□ 10
DDX55Q8NHQ9 HNRNPC-209ENST00000554383 1039 ntTSL 512.68□□□□□ -0.386e-36■□□□□ 10
DDX55Q8NHQ9 AP000275.2-201ENST00000431216 891 ntAPPRIS P1 TSL 511.99□□□□□ -0.493e-6■□□□□ 10
DDX55Q8NHQ9 COQ4-203ENST00000461102 3127 ntTSL 211.76□□□□□ -0.533e-6■□□□□ 10
DDX55Q8NHQ9 HNRNPC-220ENST00000555585 682 ntTSL 211.13□□□□□ -0.636e-36■□□□□ 10
DDX55Q8NHQ9 CHD3-208ENST00000470531 3744 ntTSL 211.09□□□□□ -0.632e-6■□□□□ 10
DDX55Q8NHQ9 CHD3-201ENST00000330494 7328 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.662e-6■□□□□ 10
DDX55Q8NHQ9 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.72e-6■□□□□ 10
DDX55Q8NHQ9 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC9.02□□□□□ -0.961e-12■□□□□ 10
DDX55Q8NHQ9 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.452e-9■□□□□ 10
DDX55Q8NHQ9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28.37■■■□□ 2.131e-12■□□□□ 10
DDX55Q8NHQ9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.921e-12■□□□□ 10
DDX55Q8NHQ9 SLC25A1-205ENST00000470922 1598 ntTSL 226.52■■□□□ 1.841e-12■□□□□ 10
DDX55Q8NHQ9 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.39■□□□□ 0.694e-18■□□□□ 10
DDX55Q8NHQ9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.654e-18■□□□□ 10
DDX55Q8NHQ9 MGAT4B-216ENST00000520969 1096 ntTSL 326.78■■□□□ 1.889e-7■□□□□ 10
DDX55Q8NHQ9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC26.06■■□□□ 1.769e-7■□□□□ 10
DDX55Q8NHQ9 C11orf24-207ENST00000532534 687 ntTSL 325.76■■□□□ 1.719e-7■□□□□ 10
DDX55Q8NHQ9 CAPN1-220ENST00000530567 1415 ntTSL 225.52■■□□□ 1.682e-9■□□□□ 10
DDX55Q8NHQ9 MGAT4B-205ENST00000518778 1568 ntTSL 1 (best)24.8■■□□□ 1.569e-7■□□□□ 10
DDX55Q8NHQ9 MGAT4B-209ENST00000519836 1686 ntTSL 1 (best)23.65■■□□□ 1.389e-7■□□□□ 10
DDX55Q8NHQ9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.299e-7■□□□□ 10
DDX55Q8NHQ9 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.149e-7■□□□□ 10
DDX55Q8NHQ9 ENGASE-206ENST00000579809 1428 ntTSL 1 (best)21.96■■□□□ 1.119e-7■□□□□ 10
DDX55Q8NHQ9 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.019e-7■□□□□ 10
DDX55Q8NHQ9 C11orf24-205ENST00000530166 941 ntTSL 321.33■■□□□ 1.019e-7■□□□□ 10
DDX55Q8NHQ9 PPP2R1A-204ENST00000462047 561 ntTSL 220.99■□□□□ 0.959e-7■□□□□ 10
DDX55Q8NHQ9 C11orf24-202ENST00000527280 533 ntAPPRIS ALT2 TSL 320.92■□□□□ 0.949e-7■□□□□ 10
DDX55Q8NHQ9 C11orf24-204ENST00000529590 610 ntTSL 320.07■□□□□ 0.89e-7■□□□□ 10
DDX55Q8NHQ9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.762e-9■□□□□ 10
DDX55Q8NHQ9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.742e-9■□□□□ 10
DDX55Q8NHQ9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.48■□□□□ 0.711e-6■□□□□ 10
DDX55Q8NHQ9 C11orf24-203ENST00000529339 603 ntTSL 219.3■□□□□ 0.689e-7■□□□□ 10
DDX55Q8NHQ9 BRD2-206ENST00000456339 887 ntTSL 418.82■□□□□ 0.69e-7■□□□□ 10
DDX55Q8NHQ9 PPP2R1A-203ENST00000454220 1233 ntTSL 1 (best)18.61■□□□□ 0.579e-7■□□□□ 10
DDX55Q8NHQ9 HNRNPL-213ENST00000601664 447 ntTSL 1 (best)18.57■□□□□ 0.569e-7■□□□□ 10
DDX55Q8NHQ9 ERMP1-206ENST00000489219 3293 ntTSL 1 (best)18.2■□□□□ 0.59e-7■□□□□ 10
DDX55Q8NHQ9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.419e-7■□□□□ 10
Retrieved 100 of 15,504 protein–RNA pairs in 144.7 ms