RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 NISCHQ9Y2I1 1504 aa19.56■□□□□ 0.72
CHD3-208ENST00000470531 DCAF8L2P0C7V8 631 aa18.69■□□□□ 0.58
CHD3-208ENST00000470531 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
CHD3-208ENST00000470531 SUPT5HO00267 1087 aaKnown RBP18.62■□□□□ 0.57
CHD3-208ENST00000470531 EHMT2Q96KQ7 1210 aa18.02■□□□□ 0.47
CHD3-208ENST00000470531 PCGF6Q9BYE7 350 aa17.83■□□□□ 0.45
CHD3-208ENST00000470531 PPARGC1BQ86YN6 1023 aaKnown RBP17.52■□□□□ 0.39
CHD3-208ENST00000470531 FAM9AQ8IZU1 332 aaPredicted RBP17.52■□□□□ 0.39
CHD3-208ENST00000470531 HRCP23327 699 aa17.46■□□□□ 0.39
CHD3-208ENST00000470531 LOC105371045A0A1W2PR82 267 aa17.38■□□□□ 0.37
CHD3-208ENST00000470531 TTBK1Q5TCY1 1321 aaPredicted RBP17.37■□□□□ 0.37
CHD3-208ENST00000470531 PELP1Q8IZL8 1130 aaKnown RBP17.25■□□□□ 0.35
CHD3-208ENST00000470531 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
CHD3-208ENST00000470531 MYO15BQ96JP2 1530 aa17.2■□□□□ 0.34
CHD3-208ENST00000470531 MYT1Q01538 1121 aa16.91■□□□□ 0.3
CHD3-208ENST00000470531 TRIM41Q8WV44 630 aa16.9■□□□□ 0.3
CHD3-208ENST00000470531 RANGAP1P46060 587 aaPredicted RBP16.82■□□□□ 0.28
CHD3-208ENST00000470531 TRIM26Q12899 539 aaPredicted RBP16.73■□□□□ 0.27
CHD3-208ENST00000470531 CCER1Q8TC90 406 aaPredicted RBP16.72■□□□□ 0.27
CHD3-208ENST00000470531 YTHDC1Q96MU7 727 aaKnown RBP16.68■□□□□ 0.26
CHD3-208ENST00000470531 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.63■□□□□ 0.25
CHD3-208ENST00000470531 SCAF1Q9H7N4 1312 aaKnown RBP16.57■□□□□ 0.24
CHD3-208ENST00000470531 ZCCHC6Q5VYS8 1495 aaKnown RBP16.56■□□□□ 0.24
CHD3-208ENST00000470531 DCAF1Q9Y4B6 1507 aa16.51■□□□□ 0.23
CHD3-208ENST00000470531 UBTFP17480 764 aaKnown RBP16.42■□□□□ 0.22
CHD3-208ENST00000470531 ZEB1P37275 1124 aaPredicted RBP16.41■□□□□ 0.22
CHD3-208ENST00000470531 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
CHD3-208ENST00000470531 CCDC180Q9P1Z9 1646 aa16.27■□□□□ 0.2
CHD3-208ENST00000470531 CENPBP07199 599 aaPredicted RBP16.25■□□□□ 0.19
CHD3-208ENST00000470531 APLP2Q06481 763 aa16.23■□□□□ 0.19
CHD3-208ENST00000470531 GTF3C3Q9Y5Q9 886 aa16.21■□□□□ 0.19
CHD3-208ENST00000470531 NEUROD1Q13562 356 aa16.2■□□□□ 0.18
CHD3-208ENST00000470531 DIEXFQ68CQ4 756 aaKnown RBP16.2■□□□□ 0.18
CHD3-208ENST00000470531 ITGAEP38570 1179 aa16.15■□□□□ 0.18
CHD3-208ENST00000470531 ACIN1Q9UKV3 1341 aaKnown RBP16.13■□□□□ 0.17
CHD3-208ENST00000470531 ATP1B4Q9UN42 357 aaPredicted RBP16.07■□□□□ 0.16
CHD3-208ENST00000470531 ABCC9O60706 1549 aa15.97■□□□□ 0.15
CHD3-208ENST00000470531 PABPN1Q86U42 306 aaKnown RBP eCLIP15.96■□□□□ 0.15
CHD3-208ENST00000470531 BCANQ96GW7 911 aa15.85■□□□□ 0.13
CHD3-208ENST00000470531 SCRIBQ14160 1630 aa15.83■□□□□ 0.13
CHD3-208ENST00000470531 CNGB1Q14028 1251 aaPredicted RBP15.83■□□□□ 0.13
CHD3-208ENST00000470531 RSF1Q96T23 1441 aaPredicted RBP15.83■□□□□ 0.12
CHD3-208ENST00000470531 RB1CC1Q8TDY2 1594 aa15.79■□□□□ 0.12
CHD3-208ENST00000470531 ZNF316A6NFI3 1004 aaPredicted RBP15.75■□□□□ 0.11
CHD3-208ENST00000470531 MIER1Q8N108 512 aa15.74■□□□□ 0.11
CHD3-208ENST00000470531 BCL11AQ9H165 835 aa15.7■□□□□ 0.1
CHD3-208ENST00000470531 PRKCSHP14314 528 aaPredicted RBP15.67■□□□□ 0.1
CHD3-208ENST00000470531 CSRNP3Q8WYN3 585 aa15.65■□□□□ 0.1
CHD3-208ENST00000470531 HIRIP3Q9BW71 556 aaPredicted RBP15.59■□□□□ 0.09
CHD3-208ENST00000470531 ERICH6Q7L0X2 663 aa15.59■□□□□ 0.09
CHD3-208ENST00000470531 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
CHD3-208ENST00000470531 P3H3Q8IVL6 736 aa15.55■□□□□ 0.08
CHD3-208ENST00000470531 FAM50AQ14320 339 aaKnown RBP15.53■□□□□ 0.08
CHD3-208ENST00000470531 POLR3GLQ9BT43 218 aa15.5■□□□□ 0.07
CHD3-208ENST00000470531 NEFLP07196 543 aa15.48■□□□□ 0.07
CHD3-208ENST00000470531 CEP162Q5TB80 1403 aa15.42■□□□□ 0.06
CHD3-208ENST00000470531 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
CHD3-208ENST00000470531 ARID3CA6NKF2 412 aa15.4■□□□□ 0.06
CHD3-208ENST00000470531 DDX10Q13206 875 aaKnown RBP15.4■□□□□ 0.06
CHD3-208ENST00000470531 SOGA1O94964 1423 aa15.4■□□□□ 0.06
CHD3-208ENST00000470531 TRIM52Q96A61 297 aa15.39■□□□□ 0.05
CHD3-208ENST00000470531 SENP3-EIF4A1A0A087X0R7 540 aa15.39■□□□□ 0.05
CHD3-208ENST00000470531 ABCC8Q09428 1581 aa15.37■□□□□ 0.05
CHD3-208ENST00000470531 WIZO95785 1651 aa15.37■□□□□ 0.05
CHD3-208ENST00000470531 CCDC88BA6NC98 1476 aa15.35■□□□□ 0.05
CHD3-208ENST00000470531 FKBP8Q14318 412 aa15.34■□□□□ 0.05
CHD3-208ENST00000470531 IRX6P78412 446 aaPredicted RBP15.33■□□□□ 0.04
CHD3-208ENST00000470531 SUPT16HQ9Y5B9 1047 aaKnown RBP15.28■□□□□ 0.04
CHD3-208ENST00000470531 RUSC2Q8N2Y8 1516 aa15.27■□□□□ 0.04
CHD3-208ENST00000470531 KCNH8Q96L42 1107 aa15.27■□□□□ 0.03
CHD3-208ENST00000470531 WRNQ14191 1432 aaPredicted RBP eCLIP15.21■□□□□ 0.03
CHD3-208ENST00000470531 SLC24A1O60721 1099 aa15.2■□□□□ 0.02
CHD3-208ENST00000470531 SIN3AQ96ST3 1273 aa15.2■□□□□ 0.02
CHD3-208ENST00000470531 CLIP1P30622 1438 aa15.2■□□□□ 0.02
CHD3-208ENST00000470531 TNIKQ9UKE5 1360 aa15.19■□□□□ 0.02
CHD3-208ENST00000470531 ZNF326Q5BKZ1 582 aaKnown RBP15.17■□□□□ 0.02
CHD3-208ENST00000470531 TSHZ2Q9NRE2 1034 aa15.17■□□□□ 0.02
CHD3-208ENST00000470531 KANK4Q5T7N3 995 aaPredicted RBP15.17■□□□□ 0.02
CHD3-208ENST00000470531 ANP32CO43423 234 aa15.14■□□□□ 0.01
CHD3-208ENST00000470531 CHIC2Q9UKJ5 165 aa15.1■□□□□ 0.01
CHD3-208ENST00000470531 ANP32EQ9BTT0 268 aa15.1■□□□□ 0.01
CHD3-208ENST00000470531 HNRNPUQ00839 825 aaKnown RBP eCLIP15.08■□□□□ 0.01
CHD3-208ENST00000470531 FAM9BQ8IZU0 186 aa15.05■□□□□ -0
CHD3-208ENST00000470531 GOLGA3Q08378 1498 aa15.04■□□□□ -0
CHD3-208ENST00000470531 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
CHD3-208ENST00000470531 SALL2Q9Y467 1007 aaPredicted RBP15.03■□□□□ -0
CHD3-208ENST00000470531 EIF4G1Q04637 1599 aaKnown RBP14.99□□□□□ -0.01
CHD3-208ENST00000470531 DHX57Q6P158 1386 aaKnown RBP14.94□□□□□ -0.02
CHD3-208ENST00000470531 RRP7BPQ9NSQ0 103 aa14.93□□□□□ -0.02
CHD3-208ENST00000470531 CDK11AQ9UQ88 783 aaPredicted RBP14.93□□□□□ -0.02
CHD3-208ENST00000470531 NBR1Q14596 966 aa14.93□□□□□ -0.02
CHD3-208ENST00000470531 VPS8Q8N3P4 1428 aa14.91□□□□□ -0.02
CHD3-208ENST00000470531 NACADO15069 1562 aa14.9□□□□□ -0.02
CHD3-208ENST00000470531 SMARCA2P51531 1590 aa14.9□□□□□ -0.02
CHD3-208ENST00000470531 NPM2Q86SE8 214 aaKnown RBP14.9□□□□□ -0.02
CHD3-208ENST00000470531 EEA1Q15075 1411 aa14.9□□□□□ -0.02
CHD3-208ENST00000470531 TOP2AP11388 1531 aaKnown RBP14.89□□□□□ -0.03
CHD3-208ENST00000470531 TONSLQ96HA7 1378 aa14.88□□□□□ -0.03
CHD3-208ENST00000470531 CLSPNQ9HAW4 1339 aa14.88□□□□□ -0.03
CHD3-208ENST00000470531 RAPGEF2Q9Y4G8 1499 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms