RNA–Protein interactions for RNA: ENST00000376237.8

HLA-C-202, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,538 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-202ENST00000376237 NISCHQ9Y2I1 1504 aa53.67■■■■■ 6.18
HLA-C-202ENST00000376237 CCDC180Q9P1Z9 1646 aa47.22■■■■■ 5.15
HLA-C-202ENST00000376237 ABCC9O60706 1549 aa45.27■■■■■ 4.84
HLA-C-202ENST00000376237 ZCCHC6Q5VYS8 1495 aaKnown RBP44.91■■■■■ 4.78
HLA-C-202ENST00000376237 DCAF8L2P0C7V8 631 aa44.49■■■■■ 4.71
HLA-C-202ENST00000376237 DCAF1Q9Y4B6 1507 aa44.48■■■■■ 4.71
HLA-C-202ENST00000376237 MYO15BQ96JP2 1530 aa44.32■■■■■ 4.69
HLA-C-202ENST00000376237 NACADO15069 1562 aa44.22■■■■■ 4.67
HLA-C-202ENST00000376237 RB1CC1Q8TDY2 1594 aa44.01■■■■■ 4.64
HLA-C-202ENST00000376237 SCRIBQ14160 1630 aa43.14■■■■■ 4.5
HLA-C-202ENST00000376237 SHROOM4Q9ULL8 1493 aa42.98■■■■■ 4.47
HLA-C-202ENST00000376237 UNC13AQ9UPW8 1703 aa42.89■■■■■ 4.46
HLA-C-202ENST00000376237 BICRAQ9NZM4 1560 aa42.59■■■■■ 4.41
HLA-C-202ENST00000376237 PABPN1Q86U42 306 aaKnown RBP eCLIP42.51■■■■■ 4.39
HLA-C-202ENST00000376237 CECR2Q9BXF3 1484 aa41.67■■■■■ 4.26
HLA-C-202ENST00000376237 BAZ1AQ9NRL2 1556 aaPredicted RBP41.54■■■■■ 4.24
HLA-C-202ENST00000376237 EIF4G1Q04637 1599 aaKnown RBP41.41■■■■■ 4.22
HLA-C-202ENST00000376237 SMARCA4P51532 1647 aa41.39■■■■■ 4.22
HLA-C-202ENST00000376237 MROH2BQ7Z745 1585 aa41.35■■■■■ 4.21
HLA-C-202ENST00000376237 RSF1Q96T23 1441 aaPredicted RBP41.29■■■■■ 4.2
HLA-C-202ENST00000376237 SUPT5HO00267 1087 aaKnown RBP41.02■■■■■ 4.16
HLA-C-202ENST00000376237 PEG3Q9GZU2 1588 aa41.01■■■■■ 4.16
HLA-C-202ENST00000376237 SMARCA2P51531 1590 aa40.97■■■■■ 4.15
HLA-C-202ENST00000376237 CC2D2AQ9P2K1 1620 aa40.97■■■■■ 4.15
HLA-C-202ENST00000376237 ATAD2BQ9ULI0 1458 aa40.96■■■■■ 4.15
HLA-C-202ENST00000376237 WIZO95785 1651 aa40.92■■■■■ 4.14
HLA-C-202ENST00000376237 NCAPD3P42695 1498 aa40.82■■■■■ 4.12
HLA-C-202ENST00000376237 BAZ1BQ9UIG0 1483 aaKnown RBP40.68■■■■■ 4.1
HLA-C-202ENST00000376237 HMGXB3Q12766 1538 aa40.67■■■■■ 4.1
HLA-C-202ENST00000376237 DNAJC5BQ9UF47 199 aa40.65■■■■■ 4.1
HLA-C-202ENST00000376237 TOP2AP11388 1531 aaKnown RBP40.59■■■■■ 4.09
HLA-C-202ENST00000376237 CCDC88BA6NC98 1476 aa40.12■■■■■ 4.01
HLA-C-202ENST00000376237 CADPSQ9ULU8 1353 aa39.69■■■■□ 3.94
HLA-C-202ENST00000376237 CFTRP13569 1480 aa39.65■■■■□ 3.94
HLA-C-202ENST00000376237 LAMC3Q9Y6N6 1575 aa39.55■■■■□ 3.92
HLA-C-202ENST00000376237 NESP48681 1621 aa39.44■■■■□ 3.9
HLA-C-202ENST00000376237 PDS5BQ9NTI5 1447 aa39.3■■■■□ 3.88
HLA-C-202ENST00000376237 PRDM2Q13029 1718 aa39.3■■■■□ 3.88
HLA-C-202ENST00000376237 FANCD2Q9BXW9 1451 aa39.2■■■■□ 3.87
HLA-C-202ENST00000376237 CEP164Q9UPV0 1460 aa39.05■■■■□ 3.84
HLA-C-202ENST00000376237 ERCC6Q03468 1493 aa38.98■■■■□ 3.83
HLA-C-202ENST00000376237 KIF21AQ7Z4S6 1674 aa38.96■■■■□ 3.83
HLA-C-202ENST00000376237 WRNQ14191 1432 aaPredicted RBP eCLIP38.91■■■■□ 3.82
HLA-C-202ENST00000376237 ABCC8Q09428 1581 aa38.91■■■■□ 3.82
HLA-C-202ENST00000376237 CHIC1Q5VXU3 224 aa38.88■■■■□ 3.81
HLA-C-202ENST00000376237 MRC2Q9UBG0 1479 aa38.78■■■■□ 3.8
HLA-C-202ENST00000376237 TRIM41Q8WV44 630 aa38.73■■■■□ 3.79
HLA-C-202ENST00000376237 CUX1P39880 1505 aa38.72■■■■□ 3.79
HLA-C-202ENST00000376237 URB2Q14146 1524 aaKnown RBP38.71■■■■□ 3.79
HLA-C-202ENST00000376237 DNMBPQ6XZF7 1577 aa38.71■■■■□ 3.79
HLA-C-202ENST00000376237 TOP2BQ02880 1626 aa38.68■■■■□ 3.78
HLA-C-202ENST00000376237 SYNJ1O43426 1573 aa38.67■■■■□ 3.78
HLA-C-202ENST00000376237 TOPBP1Q92547 1522 aa38.67■■■■□ 3.78
HLA-C-202ENST00000376237 BIVM-ERCC5R4GMW8 1640 aa38.63■■■■□ 3.77
HLA-C-202ENST00000376237 THOC2Q8NI27 1593 aaKnown RBP38.61■■■■□ 3.77
HLA-C-202ENST00000376237 WDR62O43379 1518 aa38.61■■■■□ 3.77
HLA-C-202ENST00000376237 FGD5Q6ZNL6 1462 aa38.45■■■■□ 3.75
HLA-C-202ENST00000376237 POLA1P09884 1462 aaPredicted RBP38.42■■■■□ 3.74
HLA-C-202ENST00000376237 SOGA1O94964 1423 aa38.32■■■■□ 3.72
HLA-C-202ENST00000376237 CUX2O14529 1486 aa38.26■■■■□ 3.72
HLA-C-202ENST00000376237 RAD54L2Q9Y4B4 1467 aa38.22■■■■□ 3.71
HLA-C-202ENST00000376237 IFT140Q96RY7 1462 aa38.21■■■■□ 3.71
HLA-C-202ENST00000376237 ABCA10Q8WWZ4 1543 aa38.17■■■■□ 3.7
HLA-C-202ENST00000376237 TARBP1Q13395 1621 aaKnown RBP38.14■■■■□ 3.7
HLA-C-202ENST00000376237 KIF27Q86VH2 1401 aa38.05■■■■□ 3.68
HLA-C-202ENST00000376237 WDR97A6NE52 1622 aa38.02■■■■□ 3.68
HLA-C-202ENST00000376237 EEA1Q15075 1411 aa38.01■■■■□ 3.68
HLA-C-202ENST00000376237 TDRD9Q8NDG6 1382 aaKnown RBP37.96■■■■□ 3.67
HLA-C-202ENST00000376237 RUSC2Q8N2Y8 1516 aa37.92■■■■□ 3.66
HLA-C-202ENST00000376237 ZNF608Q9ULD9 1512 aaPredicted RBP37.9■■■■□ 3.66
HLA-C-202ENST00000376237 GAPVD1Q14C86 1478 aa37.87■■■■□ 3.65
HLA-C-202ENST00000376237 ABCA5Q8WWZ7 1642 aa37.86■■■■□ 3.65
HLA-C-202ENST00000376237 FAM9AQ8IZU1 332 aaPredicted RBP37.85■■■■□ 3.65
HLA-C-202ENST00000376237 AQRO60306 1485 aaKnown RBP eCLIP37.85■■■■□ 3.656e-7■■■■■ 27.8
HLA-C-202ENST00000376237 CSRNP3Q8WYN3 585 aa37.81■■■■□ 3.64
HLA-C-202ENST00000376237 EIF4G3O43432 1585 aaKnown RBP37.77■■■■□ 3.64
HLA-C-202ENST00000376237 IGF1RP08069 1367 aa37.76■■■■□ 3.63
HLA-C-202ENST00000376237 GRIN2BQ13224 1484 aa37.74■■■■□ 3.63
HLA-C-202ENST00000376237 ERICH3Q5RHP9 1530 aa37.73■■■■□ 3.63
HLA-C-202ENST00000376237 PBRM1Q86U86 1689 aa37.62■■■■□ 3.61
HLA-C-202ENST00000376237 CARMIL1Q5VZK9 1371 aa37.56■■■■□ 3.6
HLA-C-202ENST00000376237 PRXQ9BXM0 1461 aa37.54■■■■□ 3.6
HLA-C-202ENST00000376237 CUL7Q14999 1698 aa37.54■■■■□ 3.6
HLA-C-202ENST00000376237 MAGI1Q96QZ7 1491 aaPredicted RBP37.53■■■■□ 3.6
HLA-C-202ENST00000376237 SNAPC4Q5SXM2 1469 aa37.51■■■■□ 3.59
HLA-C-202ENST00000376237 FHAD1B1AJZ9 1412 aa37.49■■■■□ 3.59
HLA-C-202ENST00000376237 KIF21BO75037 1637 aa37.44■■■■□ 3.58
HLA-C-202ENST00000376237 RAPGEF2Q9Y4G8 1499 aa37.44■■■■□ 3.58
HLA-C-202ENST00000376237 ADAMTS12P58397 1594 aa37.42■■■■□ 3.58
HLA-C-202ENST00000376237 SYNJ2O15056 1496 aa37.37■■■■□ 3.57
HLA-C-202ENST00000376237 GOLGA3Q08378 1498 aa37.36■■■■□ 3.57
HLA-C-202ENST00000376237 CHMP7Q8WUX9 453 aaPredicted RBP37.33■■■■□ 3.57
HLA-C-202ENST00000376237 LOC105371045A0A1W2PR82 267 aa37.26■■■■□ 3.56
HLA-C-202ENST00000376237 FBLN2P98095 1184 aa37.25■■■■□ 3.55
HLA-C-202ENST00000376237 GRIN2AQ12879 1464 aa37.23■■■■□ 3.55
HLA-C-202ENST00000376237 EHMT2Q96KQ7 1210 aa37.23■■■■□ 3.55
HLA-C-202ENST00000376237 UBTFP17480 764 aaKnown RBP37.2■■■■□ 3.55
HLA-C-202ENST00000376237 TNIKQ9UKE5 1360 aa37.1■■■■□ 3.53
HLA-C-202ENST00000376237 CHD1O14646 1710 aa37.06■■■■□ 3.52
HLA-C-202ENST00000376237 NUP160Q12769 1436 aa37.04■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms