RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 DCAF8L2P0C7V8 631 aa16.96■□□□□ 0.3
CHD3-202ENST00000358181 EHMT2Q96KQ7 1210 aa16.07■□□□□ 0.16
CHD3-202ENST00000358181 PELP1Q8IZL8 1130 aaKnown RBP15.76■□□□□ 0.11
CHD3-202ENST00000358181 SUPT5HO00267 1087 aaKnown RBP15.75■□□□□ 0.11
CHD3-202ENST00000358181 SHROOM4Q9ULL8 1493 aa15.61■□□□□ 0.09
CHD3-202ENST00000358181 ERICH6Q7L0X2 663 aa15.55■□□□□ 0.08
CHD3-202ENST00000358181 TTBK1Q5TCY1 1321 aaPredicted RBP15.45■□□□□ 0.06
CHD3-202ENST00000358181 MYT1Q01538 1121 aa15.35■□□□□ 0.05
CHD3-202ENST00000358181 FAM9AQ8IZU1 332 aaPredicted RBP15.35■□□□□ 0.05
CHD3-202ENST00000358181 APLP2Q06481 763 aa15.31■□□□□ 0.04
CHD3-202ENST00000358181 RANGAP1P46060 587 aaPredicted RBP15.26■□□□□ 0.03
CHD3-202ENST00000358181 ATP1B4Q9UN42 357 aaPredicted RBP15.22■□□□□ 0.03
CHD3-202ENST00000358181 CCER1Q8TC90 406 aaPredicted RBP15.08■□□□□ 0.01
CHD3-202ENST00000358181 CHIC1Q5VXU3 224 aa15.08■□□□□ 0
CHD3-202ENST00000358181 NISCHQ9Y2I1 1504 aa15.04■□□□□ -0
CHD3-202ENST00000358181 MYT1LQ9UL68 1186 aa15.01□□□□□ -0.01
CHD3-202ENST00000358181 POLR3GLQ9BT43 218 aa14.8□□□□□ -0.04
CHD3-202ENST00000358181 CNGB1Q14028 1251 aaPredicted RBP14.79□□□□□ -0.04
CHD3-202ENST00000358181 SLC4A1APQ9BWU0 796 aaKnown RBP14.78□□□□□ -0.04
CHD3-202ENST00000358181 PCGF6Q9BYE7 350 aa14.77□□□□□ -0.04
CHD3-202ENST00000358181 DAXXQ9UER7 740 aaPredicted RBP14.77□□□□□ -0.04
CHD3-202ENST00000358181 YTHDC1Q96MU7 727 aaKnown RBP14.74□□□□□ -0.05
CHD3-202ENST00000358181 NEFLP07196 543 aa14.69□□□□□ -0.06
CHD3-202ENST00000358181 BCL11AQ9H165 835 aa14.52□□□□□ -0.08
CHD3-202ENST00000358181 SLC24A1O60721 1099 aa14.52□□□□□ -0.09
CHD3-202ENST00000358181 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.52□□□□□ -0.09
CHD3-202ENST00000358181 HNRNPUL2Q1KMD3 747 aaKnown RBP14.52□□□□□ -0.09
CHD3-202ENST00000358181 CENPBP07199 599 aaPredicted RBP14.51□□□□□ -0.09
CHD3-202ENST00000358181 PPARGC1BQ86YN6 1023 aaKnown RBP14.5□□□□□ -0.09
CHD3-202ENST00000358181 CLSPNQ9HAW4 1339 aa14.4□□□□□ -0.1
CHD3-202ENST00000358181 ZNF316A6NFI3 1004 aaPredicted RBP14.37□□□□□ -0.11
CHD3-202ENST00000358181 TRIM41Q8WV44 630 aa14.35□□□□□ -0.11
CHD3-202ENST00000358181 UBTFP17480 764 aaKnown RBP14.33□□□□□ -0.12
CHD3-202ENST00000358181 ITGAEP38570 1179 aa14.31□□□□□ -0.12
CHD3-202ENST00000358181 PLPPR3Q6T4P5 718 aa14.19□□□□□ -0.14
CHD3-202ENST00000358181 BCANQ96GW7 911 aa14.19□□□□□ -0.14
CHD3-202ENST00000358181 ZBTB47Q9UFB7 747 aaPredicted RBP14.11□□□□□ -0.15
CHD3-202ENST00000358181 RTL5Q5HYW3 569 aaPredicted RBP14.06□□□□□ -0.16
CHD3-202ENST00000358181 A0A0G2JS52 829 aa13.98□□□□□ -0.17
CHD3-202ENST00000358181 LOC105371045A0A1W2PR82 267 aa13.92□□□□□ -0.18
CHD3-202ENST00000358181 TULP1O00294 542 aaPredicted RBP13.92□□□□□ -0.18
CHD3-202ENST00000358181 NCBP3Q53F19 620 aaKnown RBP13.88□□□□□ -0.19
CHD3-202ENST00000358181 CANXP27824 592 aaKnown RBP13.88□□□□□ -0.19
CHD3-202ENST00000358181 ZEB1P37275 1124 aaPredicted RBP13.87□□□□□ -0.19
CHD3-202ENST00000358181 SCAF1Q9H7N4 1312 aaKnown RBP13.87□□□□□ -0.19
CHD3-202ENST00000358181 ZNF326Q5BKZ1 582 aaKnown RBP13.83□□□□□ -0.19
CHD3-202ENST00000358181 PLEKHG5O94827 1062 aa13.81□□□□□ -0.2
CHD3-202ENST00000358181 PABPN1Q86U42 306 aaKnown RBP eCLIP13.77□□□□□ -0.2
CHD3-202ENST00000358181 CDK11BP21127 795 aaKnown RBP13.76□□□□□ -0.21
CHD3-202ENST00000358181 TRIM52Q96A61 297 aa13.76□□□□□ -0.21
CHD3-202ENST00000358181 CDK11AQ9UQ88 783 aaPredicted RBP13.76□□□□□ -0.21
CHD3-202ENST00000358181 NEFMP07197 916 aa13.72□□□□□ -0.21
CHD3-202ENST00000358181 FBLN2P98095 1184 aa13.67□□□□□ -0.22
CHD3-202ENST00000358181 FAM50AQ14320 339 aaKnown RBP13.66□□□□□ -0.22
CHD3-202ENST00000358181 ZBTB7CA1YPR0 619 aa13.65□□□□□ -0.22
CHD3-202ENST00000358181 NEUROD1Q13562 356 aa13.64□□□□□ -0.23
CHD3-202ENST00000358181 TRIM26Q12899 539 aaPredicted RBP13.62□□□□□ -0.23
CHD3-202ENST00000358181 ESF1Q9H501 851 aaKnown RBP13.62□□□□□ -0.23
CHD3-202ENST00000358181 NPM2Q86SE8 214 aaKnown RBP13.61□□□□□ -0.23
CHD3-202ENST00000358181 ARID3CA6NKF2 412 aa13.61□□□□□ -0.23
CHD3-202ENST00000358181 EIF5BO60841 1220 aaKnown RBP13.58□□□□□ -0.24
CHD3-202ENST00000358181 ABCC9O60706 1549 aa13.58□□□□□ -0.24
CHD3-202ENST00000358181 ARXQ96QS3 562 aa13.57□□□□□ -0.24
CHD3-202ENST00000358181 HSP90AA1P07900 732 aaKnown RBP13.57□□□□□ -0.24
CHD3-202ENST00000358181 SENP3Q9H4L4 574 aaPredicted RBP13.57□□□□□ -0.24
CHD3-202ENST00000358181 STAG3Q9UJ98 1225 aa13.56□□□□□ -0.24
CHD3-202ENST00000358181 HRCP23327 699 aa13.55□□□□□ -0.24
CHD3-202ENST00000358181 ANP32BQ92688 251 aaKnown RBP13.52□□□□□ -0.25
CHD3-202ENST00000358181 CHGAP10645 457 aaKnown RBP13.51□□□□□ -0.25
CHD3-202ENST00000358181 TAOK2Q9UL54 1235 aa13.48□□□□□ -0.25
CHD3-202ENST00000358181 P3H3Q8IVL6 736 aa13.45□□□□□ -0.26
CHD3-202ENST00000358181 TPRNQ4KMQ1 711 aa13.43□□□□□ -0.26
CHD3-202ENST00000358181 C14orf37Q86TY3 774 aa13.42□□□□□ -0.26
CHD3-202ENST00000358181 CLSTN1O94985 981 aa13.42□□□□□ -0.26
CHD3-202ENST00000358181 PRM3Q9NNZ6 103 aa13.38□□□□□ -0.27
CHD3-202ENST00000358181 HAP1P54257 671 aaPredicted RBP13.38□□□□□ -0.27
CHD3-202ENST00000358181 NPHP1O15259 732 aa13.37□□□□□ -0.27
CHD3-202ENST00000358181 GTF3C3Q9Y5Q9 886 aa13.37□□□□□ -0.27
CHD3-202ENST00000358181 ZNF777Q9ULD5 760 aaPredicted RBP13.34□□□□□ -0.27
CHD3-202ENST00000358181 SALL2Q9Y467 1007 aaPredicted RBP13.31□□□□□ -0.28
CHD3-202ENST00000358181 DIEXFQ68CQ4 756 aaKnown RBP13.31□□□□□ -0.28
CHD3-202ENST00000358181 ANP32CO43423 234 aa13.29□□□□□ -0.28
CHD3-202ENST00000358181 ANP32AP39687 249 aaKnown RBP13.27□□□□□ -0.28
CHD3-202ENST00000358181 AMER1Q5JTC6 1135 aaPredicted RBP13.24□□□□□ -0.29
CHD3-202ENST00000358181 KRI1Q8N9T8 703 aaKnown RBP13.23□□□□□ -0.29
CHD3-202ENST00000358181 UPF2Q9HAU5 1272 aaKnown RBP13.2□□□□□ -0.3
CHD3-202ENST00000358181 ISY1Q9ULR0 285 aaKnown RBP13.17□□□□□ -0.3
CHD3-202ENST00000358181 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.17□□□□□ -0.3
CHD3-202ENST00000358181 ANO8Q9HCE9 1232 aaPredicted RBP13.16□□□□□ -0.3
CHD3-202ENST00000358181 FBXO3Q9UK99 471 aa13.15□□□□□ -0.3
CHD3-202ENST00000358181 NBR1Q14596 966 aa13.13□□□□□ -0.31
CHD3-202ENST00000358181 PDE4CQ08493 712 aa13.12□□□□□ -0.31
CHD3-202ENST00000358181 GLIPR1L2Q4G1C9 344 aa13.11□□□□□ -0.31
CHD3-202ENST00000358181 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.1□□□□□ -0.315e-6■■□□□ 13.6
CHD3-202ENST00000358181 LMOD2Q6P5Q4 547 aa13.1□□□□□ -0.31
CHD3-202ENST00000358181 ZRSR1Q15695 479 aaKnown RBP13.1□□□□□ -0.31
CHD3-202ENST00000358181 NCLP19338 710 aaKnown RBP13.08□□□□□ -0.32
CHD3-202ENST00000358181 NPM1P06748 294 aaKnown RBP eCLIP13.07□□□□□ -0.32
CHD3-202ENST00000358181 MYH16Q9H6N6 1097 aa13.07□□□□□ -0.32
CHD3-202ENST00000358181 NAP1L2Q9ULW6 460 aaPredicted RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms