RNA–Protein interactions for RNA: ENST00000555585.5

HNRNPC-220, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 2

Gene HNRNPC, Length 682 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-220ENST00000555585 AEBP2Q6ZN18 517 aaPredicted RBP22.68■■□□□ 1.22
HNRNPC-220ENST00000555585 NISCHQ9Y2I1 1504 aa22.21■■□□□ 1.15
HNRNPC-220ENST00000555585 CHIC1Q5VXU3 224 aa21.62■■□□□ 1.05
HNRNPC-220ENST00000555585 CCDC180Q9P1Z9 1646 aa19.48■□□□□ 0.71
HNRNPC-220ENST00000555585 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
HNRNPC-220ENST00000555585 PHF23Q9BUL5 403 aaPredicted RBP19.13■□□□□ 0.65
HNRNPC-220ENST00000555585 ZCCHC6Q5VYS8 1495 aaKnown RBP18.6■□□□□ 0.57
HNRNPC-220ENST00000555585 ABCC9O60706 1549 aa18.59■□□□□ 0.57
HNRNPC-220ENST00000555585 DCAF8L2P0C7V8 631 aa18.46■□□□□ 0.55
HNRNPC-220ENST00000555585 DCAF1Q9Y4B6 1507 aa18.34■□□□□ 0.53
HNRNPC-220ENST00000555585 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
HNRNPC-220ENST00000555585 NACADO15069 1562 aa18.17■□□□□ 0.5
HNRNPC-220ENST00000555585 RB1CC1Q8TDY2 1594 aa18.08■□□□□ 0.49
HNRNPC-220ENST00000555585 FOXD1Q16676 465 aa18.04■□□□□ 0.48
HNRNPC-220ENST00000555585 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
HNRNPC-220ENST00000555585 SCRIBQ14160 1630 aa17.9■□□□□ 0.46
HNRNPC-220ENST00000555585 UNC13AQ9UPW8 1703 aa17.72■□□□□ 0.43
HNRNPC-220ENST00000555585 BICRAQ9NZM4 1560 aa17.5■□□□□ 0.39
HNRNPC-220ENST00000555585 PABPN1Q86U42 306 aaKnown RBP eCLIP17.48■□□□□ 0.39
HNRNPC-220ENST00000555585 PLPPR3Q6T4P5 718 aa17.33■□□□□ 0.36
HNRNPC-220ENST00000555585 CECR2Q9BXF3 1484 aa17.26■□□□□ 0.35
HNRNPC-220ENST00000555585 SUPT5HO00267 1087 aaKnown RBP17.25■□□□□ 0.35
HNRNPC-220ENST00000555585 BAZ1AQ9NRL2 1556 aaPredicted RBP17.18■□□□□ 0.34
HNRNPC-220ENST00000555585 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
HNRNPC-220ENST00000555585 RSF1Q96T23 1441 aaPredicted RBP17.13■□□□□ 0.33
HNRNPC-220ENST00000555585 SMARCA4P51532 1647 aa17.13■□□□□ 0.33
HNRNPC-220ENST00000555585 WIZO95785 1651 aa17.03■□□□□ 0.32
HNRNPC-220ENST00000555585 EIF4G1Q04637 1599 aaKnown RBP17■□□□□ 0.31
HNRNPC-220ENST00000555585 MSH5O43196 834 aa16.93■□□□□ 0.3
HNRNPC-220ENST00000555585 PIAS4Q8N2W9 510 aaPredicted RBP16.92■□□□□ 0.3
HNRNPC-220ENST00000555585 PEG3Q9GZU2 1588 aa16.89■□□□□ 0.3
HNRNPC-220ENST00000555585 SMARCA2P51531 1590 aa16.88■□□□□ 0.29
HNRNPC-220ENST00000555585 PPP6R1Q9UPN7 881 aa16.87■□□□□ 0.29
HNRNPC-220ENST00000555585 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
HNRNPC-220ENST00000555585 ADRA2BP18089 450 aa16.86■□□□□ 0.29
HNRNPC-220ENST00000555585 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
HNRNPC-220ENST00000555585 CC2D2AQ9P2K1 1620 aa16.81■□□□□ 0.28
HNRNPC-220ENST00000555585 BAZ1BQ9UIG0 1483 aaKnown RBP16.8■□□□□ 0.28
HNRNPC-220ENST00000555585 NCAPD3P42695 1498 aa16.74■□□□□ 0.27
HNRNPC-220ENST00000555585 HMGXB3Q12766 1538 aa16.73■□□□□ 0.27
HNRNPC-220ENST00000555585 CCDC88BA6NC98 1476 aa16.65■□□□□ 0.26
HNRNPC-220ENST00000555585 DNAJC5BQ9UF47 199 aa16.51■□□□□ 0.23
HNRNPC-220ENST00000555585 POTEDQ86YR6 584 aa16.4■□□□□ 0.22
HNRNPC-220ENST00000555585 CFTRP13569 1480 aa16.32■□□□□ 0.2
HNRNPC-220ENST00000555585 CADPSQ9ULU8 1353 aa16.32■□□□□ 0.2
HNRNPC-220ENST00000555585 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
HNRNPC-220ENST00000555585 ABCC8Q09428 1581 aa16.26■□□□□ 0.19
HNRNPC-220ENST00000555585 LAMC3Q9Y6N6 1575 aa16.25■□□□□ 0.19
HNRNPC-220ENST00000555585 NESP48681 1621 aa16.24■□□□□ 0.19
HNRNPC-220ENST00000555585 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
HNRNPC-220ENST00000555585 WRNQ14191 1432 aaPredicted RBP eCLIP16.16■□□□□ 0.18
HNRNPC-220ENST00000555585 FANCD2Q9BXW9 1451 aa16.15■□□□□ 0.18
HNRNPC-220ENST00000555585 PDS5BQ9NTI5 1447 aa16.12■□□□□ 0.17
HNRNPC-220ENST00000555585 SYNJ1O43426 1573 aa16.1■□□□□ 0.17
HNRNPC-220ENST00000555585 KIF21AQ7Z4S6 1674 aa16.08■□□□□ 0.17
HNRNPC-220ENST00000555585 CEP164Q9UPV0 1460 aa16.08■□□□□ 0.16
HNRNPC-220ENST00000555585 BIVM-ERCC5R4GMW8 1640 aa16.06■□□□□ 0.16
HNRNPC-220ENST00000555585 TOP2BQ02880 1626 aa16.05■□□□□ 0.16
HNRNPC-220ENST00000555585 CUX1P39880 1505 aa16.04■□□□□ 0.16
HNRNPC-220ENST00000555585 DNMBPQ6XZF7 1577 aa15.98■□□□□ 0.15
HNRNPC-220ENST00000555585 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
HNRNPC-220ENST00000555585 TOPBP1Q92547 1522 aa15.95■□□□□ 0.14
HNRNPC-220ENST00000555585 URB2Q14146 1524 aaKnown RBP15.94■□□□□ 0.14
HNRNPC-220ENST00000555585 FAM9AQ8IZU1 332 aaPredicted RBP15.94■□□□□ 0.14
HNRNPC-220ENST00000555585 MRC2Q9UBG0 1479 aa15.93■□□□□ 0.14
HNRNPC-220ENST00000555585 FGD5Q6ZNL6 1462 aa15.91■□□□□ 0.14
HNRNPC-220ENST00000555585 SOGA1O94964 1423 aa15.89■□□□□ 0.13
HNRNPC-220ENST00000555585 POLA1P09884 1462 aaPredicted RBP15.84■□□□□ 0.13
HNRNPC-220ENST00000555585 RUSC2Q8N2Y8 1516 aa15.84■□□□□ 0.13
HNRNPC-220ENST00000555585 THOC2Q8NI27 1593 aaKnown RBP15.84■□□□□ 0.13
HNRNPC-220ENST00000555585 EEA1Q15075 1411 aa15.84■□□□□ 0.13
HNRNPC-220ENST00000555585 WDR62O43379 1518 aa15.84■□□□□ 0.13
HNRNPC-220ENST00000555585 RAD54L2Q9Y4B4 1467 aa15.81■□□□□ 0.12
HNRNPC-220ENST00000555585 CUX2O14529 1486 aa15.78■□□□□ 0.12
HNRNPC-220ENST00000555585 KIF27Q86VH2 1401 aa15.78■□□□□ 0.12
HNRNPC-220ENST00000555585 CSRNP3Q8WYN3 585 aa15.78■□□□□ 0.12
HNRNPC-220ENST00000555585 LOC105371045A0A1W2PR82 267 aa15.76■□□□□ 0.11
HNRNPC-220ENST00000555585 ABCA10Q8WWZ4 1543 aa15.76■□□□□ 0.11
HNRNPC-220ENST00000555585 WDR97A6NE52 1622 aa15.75■□□□□ 0.11
HNRNPC-220ENST00000555585 EHMT2Q96KQ7 1210 aa15.74■□□□□ 0.11
HNRNPC-220ENST00000555585 TARBP1Q13395 1621 aaKnown RBP15.73■□□□□ 0.11
HNRNPC-220ENST00000555585 IFT140Q96RY7 1462 aa15.71■□□□□ 0.1
HNRNPC-220ENST00000555585 TDRD9Q8NDG6 1382 aaKnown RBP15.67■□□□□ 0.1
HNRNPC-220ENST00000555585 KIF21BO75037 1637 aa15.65■□□□□ 0.1
HNRNPC-220ENST00000555585 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
HNRNPC-220ENST00000555585 GAPVD1Q14C86 1478 aa15.64■□□□□ 0.09
HNRNPC-220ENST00000555585 IGF1RP08069 1367 aa15.63■□□□□ 0.09
HNRNPC-220ENST00000555585 GOLGA3Q08378 1498 aa15.62■□□□□ 0.09
HNRNPC-220ENST00000555585 PBRM1Q86U86 1689 aa15.6■□□□□ 0.09
HNRNPC-220ENST00000555585 AQRO60306 1485 aaKnown RBP eCLIP15.6■□□□□ 0.098e-23■■■■□ 20.2
HNRNPC-220ENST00000555585 ZNF608Q9ULD9 1512 aaPredicted RBP15.6■□□□□ 0.09
HNRNPC-220ENST00000555585 PRXQ9BXM0 1461 aa15.59■□□□□ 0.09
HNRNPC-220ENST00000555585 UBTFP17480 764 aaKnown RBP15.59■□□□□ 0.09
HNRNPC-220ENST00000555585 ERICH3Q5RHP9 1530 aa15.58■□□□□ 0.08
HNRNPC-220ENST00000555585 CUL7Q14999 1698 aa15.57■□□□□ 0.08
HNRNPC-220ENST00000555585 CARMIL1Q5VZK9 1371 aa15.57■□□□□ 0.08
HNRNPC-220ENST00000555585 RAPGEF2Q9Y4G8 1499 aa15.57■□□□□ 0.08
HNRNPC-220ENST00000555585 EIF4G3O43432 1585 aaKnown RBP15.57■□□□□ 0.08
HNRNPC-220ENST00000555585 GRIN2BQ13224 1484 aa15.54■□□□□ 0.08
HNRNPC-220ENST00000555585 TNIKQ9UKE5 1360 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms