RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 NISCHQ9Y2I1 1504 aa37.6■■■■□ 3.61
CHD3-205ENST00000449744 CCDC180Q9P1Z9 1646 aa33.59■■■□□ 2.97
CHD3-205ENST00000449744 ABCC9O60706 1549 aa33.29■■■□□ 2.92
CHD3-205ENST00000449744 RB1CC1Q8TDY2 1594 aa31.85■■■□□ 2.69
CHD3-205ENST00000449744 NACADO15069 1562 aa31.7■■■□□ 2.67
CHD3-205ENST00000449744 DCAF8L2P0C7V8 631 aa31.7■■■□□ 2.67
CHD3-205ENST00000449744 MYO15BQ96JP2 1530 aa31.34■■■□□ 2.61
CHD3-205ENST00000449744 ZCCHC6Q5VYS8 1495 aaKnown RBP31.22■■■□□ 2.59
CHD3-205ENST00000449744 DNAJC5BQ9UF47 199 aa31.1■■■□□ 2.57
CHD3-205ENST00000449744 PABPN1Q86U42 306 aaKnown RBP eCLIP31.07■■■□□ 2.56
CHD3-205ENST00000449744 DCAF1Q9Y4B6 1507 aa31.07■■■□□ 2.56
CHD3-205ENST00000449744 UNC13AQ9UPW8 1703 aa31.06■■■□□ 2.56
CHD3-205ENST00000449744 BICRAQ9NZM4 1560 aa30.83■■■□□ 2.53
CHD3-205ENST00000449744 SCRIBQ14160 1630 aa30.65■■■□□ 2.5
CHD3-205ENST00000449744 SHROOM4Q9ULL8 1493 aa30.5■■■□□ 2.47
CHD3-205ENST00000449744 EIF4G1Q04637 1599 aaKnown RBP30.09■■■□□ 2.41
CHD3-205ENST00000449744 CC2D2AQ9P2K1 1620 aa30.07■■■□□ 2.4
CHD3-205ENST00000449744 CECR2Q9BXF3 1484 aa29.96■■■□□ 2.39
CHD3-205ENST00000449744 SMARCA4P51532 1647 aa29.26■■■□□ 2.27
CHD3-205ENST00000449744 NCAPD3P42695 1498 aa29.24■■■□□ 2.27
CHD3-205ENST00000449744 ATAD2BQ9ULI0 1458 aa29.21■■■□□ 2.27
CHD3-205ENST00000449744 BAZ1AQ9NRL2 1556 aaPredicted RBP29.19■■■□□ 2.26
CHD3-205ENST00000449744 SMARCA2P51531 1590 aa29.17■■■□□ 2.26
CHD3-205ENST00000449744 HMGXB3Q12766 1538 aa29.05■■■□□ 2.24
CHD3-205ENST00000449744 BAZ1BQ9UIG0 1483 aaKnown RBP28.97■■■□□ 2.23
CHD3-205ENST00000449744 MROH2BQ7Z745 1585 aa28.97■■■□□ 2.23
CHD3-205ENST00000449744 PEG3Q9GZU2 1588 aa28.95■■■□□ 2.22
CHD3-205ENST00000449744 ERCC6Q03468 1493 aa28.77■■■□□ 2.2
CHD3-205ENST00000449744 NESP48681 1621 aa28.67■■■□□ 2.18
CHD3-205ENST00000449744 DNAJC5Q9H3Z4 198 aa28.66■■■□□ 2.18
CHD3-205ENST00000449744 WIZO95785 1651 aa28.64■■■□□ 2.18
CHD3-205ENST00000449744 LAMC3Q9Y6N6 1575 aa28.55■■■□□ 2.16
CHD3-205ENST00000449744 CUX2O14529 1486 aa28.55■■■□□ 2.16
CHD3-205ENST00000449744 RSF1Q96T23 1441 aaPredicted RBP28.51■■■□□ 2.15
CHD3-205ENST00000449744 PDS5BQ9NTI5 1447 aa28.4■■■□□ 2.14
CHD3-205ENST00000449744 CADPSQ9ULU8 1353 aa28.39■■■□□ 2.14
CHD3-205ENST00000449744 TOP2AP11388 1531 aaKnown RBP28.32■■■□□ 2.12
CHD3-205ENST00000449744 KIF21AQ7Z4S6 1674 aa28.31■■■□□ 2.12
CHD3-205ENST00000449744 THOC2Q8NI27 1593 aaKnown RBP28.29■■■□□ 2.12
CHD3-205ENST00000449744 CFTRP13569 1480 aa28.12■■■□□ 2.09
CHD3-205ENST00000449744 MRC2Q9UBG0 1479 aa28.11■■■□□ 2.09
CHD3-205ENST00000449744 CEP164Q9UPV0 1460 aa28.08■■■□□ 2.09
CHD3-205ENST00000449744 FANCD2Q9BXW9 1451 aa28.08■■■□□ 2.09
CHD3-205ENST00000449744 WDR62O43379 1518 aa28.01■■■□□ 2.07
CHD3-205ENST00000449744 CCDC88BA6NC98 1476 aa27.99■■■□□ 2.07
CHD3-205ENST00000449744 PRDM2Q13029 1718 aa27.86■■■□□ 2.05
CHD3-205ENST00000449744 URB2Q14146 1524 aaKnown RBP27.79■■■□□ 2.04
CHD3-205ENST00000449744 ABCC8Q09428 1581 aa27.57■■■□□ 2
CHD3-205ENST00000449744 SUPT5HO00267 1087 aaKnown RBP27.57■■■□□ 2
CHD3-205ENST00000449744 TOPBP1Q92547 1522 aa27.57■■■□□ 2
CHD3-205ENST00000449744 IFT140Q96RY7 1462 aa27.51■■□□□ 1.99
CHD3-205ENST00000449744 DNMBPQ6XZF7 1577 aa27.5■■□□□ 1.99
CHD3-205ENST00000449744 TRIM41Q8WV44 630 aa27.47■■□□□ 1.99
CHD3-205ENST00000449744 ZNF608Q9ULD9 1512 aaPredicted RBP27.4■■□□□ 1.98
CHD3-205ENST00000449744 OSCARQ8IYS5 282 aa27.35■■□□□ 1.97
CHD3-205ENST00000449744 POLA1P09884 1462 aaPredicted RBP27.31■■□□□ 1.96
CHD3-205ENST00000449744 TARBP1Q13395 1621 aaKnown RBP27.27■■□□□ 1.96
CHD3-205ENST00000449744 EIF4G3O43432 1585 aaKnown RBP27.26■■□□□ 1.96
CHD3-205ENST00000449744 SOGA1O94964 1423 aa27.22■■□□□ 1.95
CHD3-205ENST00000449744 AQRO60306 1485 aaKnown RBP eCLIP27.21■■□□□ 1.957e-9■■■■■ 40.5
CHD3-205ENST00000449744 RAD54L2Q9Y4B4 1467 aa27.2■■□□□ 1.95
CHD3-205ENST00000449744 CUX1P39880 1505 aa27.2■■□□□ 1.94
CHD3-205ENST00000449744 FGD5Q6ZNL6 1462 aa27.19■■□□□ 1.94
CHD3-205ENST00000449744 TDRD9Q8NDG6 1382 aaKnown RBP27.11■■□□□ 1.93
CHD3-205ENST00000449744 WDR97A6NE52 1622 aa27.05■■□□□ 1.92
CHD3-205ENST00000449744 FBLN2P98095 1184 aa27.04■■□□□ 1.92
CHD3-205ENST00000449744 CHD1O14646 1710 aa27■■□□□ 1.91
CHD3-205ENST00000449744 SNAPC4Q5SXM2 1469 aa26.95■■□□□ 1.91
CHD3-205ENST00000449744 GRIN2BQ13224 1484 aa26.93■■□□□ 1.9
CHD3-205ENST00000449744 WRNQ14191 1432 aaPredicted RBP eCLIP26.91■■□□□ 1.9
CHD3-205ENST00000449744 MAGI1Q96QZ7 1491 aaPredicted RBP26.9■■□□□ 1.9
CHD3-205ENST00000449744 RIMBP3CA6NJZ7 1639 aa26.9■■□□□ 1.9
CHD3-205ENST00000449744 RIMBP3BA6NNM3 1639 aa26.9■■□□□ 1.9
CHD3-205ENST00000449744 RIMBP3Q9UFD9 1639 aa26.9■■□□□ 1.9
CHD3-205ENST00000449744 ABCA10Q8WWZ4 1543 aa26.9■■□□□ 1.9
CHD3-205ENST00000449744 GAPVD1Q14C86 1478 aa26.88■■□□□ 1.89
CHD3-205ENST00000449744 CHMP7Q8WUX9 453 aaPredicted RBP26.88■■□□□ 1.89
CHD3-205ENST00000449744 TOP2BQ02880 1626 aa26.87■■□□□ 1.89
CHD3-205ENST00000449744 BIVM-ERCC5R4GMW8 1640 aa26.86■■□□□ 1.89
CHD3-205ENST00000449744 ARHGEF11O15085 1522 aa26.85■■□□□ 1.89
CHD3-205ENST00000449744 SYNJ1O43426 1573 aa26.83■■□□□ 1.89
CHD3-205ENST00000449744 PBRM1Q86U86 1689 aa26.82■■□□□ 1.88
CHD3-205ENST00000449744 ABCA5Q8WWZ7 1642 aa26.8■■□□□ 1.88
CHD3-205ENST00000449744 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
CHD3-205ENST00000449744 CYB5RLQ6IPT4 315 aa26.69■■□□□ 1.86
CHD3-205ENST00000449744 CLASP1Q7Z460 1538 aa26.69■■□□□ 1.86
CHD3-205ENST00000449744 ARAP1Q96P48 1450 aa26.61■■□□□ 1.85
CHD3-205ENST00000449744 ADAMTS12P58397 1594 aa26.59■■□□□ 1.85
CHD3-205ENST00000449744 GRIN2AQ12879 1464 aa26.58■■□□□ 1.85
CHD3-205ENST00000449744 ERICH3Q5RHP9 1530 aa26.57■■□□□ 1.84
CHD3-205ENST00000449744 FHAD1B1AJZ9 1412 aa26.56■■□□□ 1.84
CHD3-205ENST00000449744 TRHP20396 242 aaPredicted RBP26.47■■□□□ 1.83
CHD3-205ENST00000449744 NUP160Q12769 1436 aa26.46■■□□□ 1.83
CHD3-205ENST00000449744 CEP170Q5SW79 1584 aa26.45■■□□□ 1.82
CHD3-205ENST00000449744 KIF27Q86VH2 1401 aa26.39■■□□□ 1.82
CHD3-205ENST00000449744 IGF1RP08069 1367 aa26.31■■□□□ 1.8
CHD3-205ENST00000449744 ERCC6L2Q5T890 1561 aa26.29■■□□□ 1.8
CHD3-205ENST00000449744 SHROOM2Q13796 1616 aa26.28■■□□□ 1.8
CHD3-205ENST00000449744 CUL7Q14999 1698 aa26.26■■□□□ 1.79
CHD3-205ENST00000449744 JPH4Q96JJ6 628 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms