RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 NISCHQ9Y2I1 1504 aa48.47■■■■■ 5.35
CHD3-204ENST00000439235 CCDC180Q9P1Z9 1646 aa42.71■■■■■ 4.43
CHD3-204ENST00000439235 ABCC9O60706 1549 aa40.85■■■■■ 4.13
CHD3-204ENST00000439235 ZCCHC6Q5VYS8 1495 aaKnown RBP40.6■■■■■ 4.09
CHD3-204ENST00000439235 DCAF1Q9Y4B6 1507 aa40.18■■■■■ 4.02
CHD3-204ENST00000439235 DCAF8L2P0C7V8 631 aa40.08■■■■■ 4.01
CHD3-204ENST00000439235 MYO15BQ96JP2 1530 aa40.01■■■■□ 3.99
CHD3-204ENST00000439235 NACADO15069 1562 aa39.93■■■■□ 3.98
CHD3-204ENST00000439235 RB1CC1Q8TDY2 1594 aa39.75■■■■□ 3.95
CHD3-204ENST00000439235 SCRIBQ14160 1630 aa39.03■■■■□ 3.84
CHD3-204ENST00000439235 SHROOM4Q9ULL8 1493 aa38.86■■■■□ 3.81
CHD3-204ENST00000439235 UNC13AQ9UPW8 1703 aa38.76■■■■□ 3.8
CHD3-204ENST00000439235 BICRAQ9NZM4 1560 aa38.45■■■■□ 3.75
CHD3-204ENST00000439235 PABPN1Q86U42 306 aaKnown RBP eCLIP38.3■■■■□ 3.72
CHD3-204ENST00000439235 DNAJC5BQ9UF47 199 aa38.01■■■■□ 3.68
CHD3-204ENST00000439235 CECR2Q9BXF3 1484 aa37.62■■■■□ 3.61
CHD3-204ENST00000439235 BAZ1AQ9NRL2 1556 aaPredicted RBP37.54■■■■□ 3.6
CHD3-204ENST00000439235 SMARCA4P51532 1647 aa37.42■■■■□ 3.58
CHD3-204ENST00000439235 EIF4G1Q04637 1599 aaKnown RBP37.39■■■■□ 3.58
CHD3-204ENST00000439235 MROH2BQ7Z745 1585 aa37.36■■■■□ 3.57
CHD3-204ENST00000439235 RSF1Q96T23 1441 aaPredicted RBP37.27■■■■□ 3.56
CHD3-204ENST00000439235 PEG3Q9GZU2 1588 aa37.04■■■■□ 3.52
CHD3-204ENST00000439235 SUPT5HO00267 1087 aaKnown RBP37.03■■■■□ 3.52
CHD3-204ENST00000439235 SMARCA2P51531 1590 aa37■■■■□ 3.51
CHD3-204ENST00000439235 WIZO95785 1651 aa36.99■■■■□ 3.51
CHD3-204ENST00000439235 CC2D2AQ9P2K1 1620 aa36.99■■■■□ 3.51
CHD3-204ENST00000439235 ATAD2BQ9ULI0 1458 aa36.96■■■■□ 3.51
CHD3-204ENST00000439235 NCAPD3P42695 1498 aa36.81■■■■□ 3.48
CHD3-204ENST00000439235 BAZ1BQ9UIG0 1483 aaKnown RBP36.75■■■■□ 3.47
CHD3-204ENST00000439235 HMGXB3Q12766 1538 aa36.75■■■■□ 3.47
CHD3-204ENST00000439235 TOP2AP11388 1531 aaKnown RBP36.71■■■■□ 3.47
CHD3-204ENST00000439235 CCDC88BA6NC98 1476 aa36.23■■■■□ 3.39
CHD3-204ENST00000439235 CADPSQ9ULU8 1353 aa35.79■■■■□ 3.32
CHD3-204ENST00000439235 CFTRP13569 1480 aa35.78■■■■□ 3.32
CHD3-204ENST00000439235 LAMC3Q9Y6N6 1575 aa35.71■■■■□ 3.31
CHD3-204ENST00000439235 NESP48681 1621 aa35.61■■■■□ 3.29
CHD3-204ENST00000439235 PRDM2Q13029 1718 aa35.57■■■■□ 3.29
CHD3-204ENST00000439235 PDS5BQ9NTI5 1447 aa35.44■■■■□ 3.26
CHD3-204ENST00000439235 DNAJC5Q9H3Z4 198 aa35.43■■■■□ 3.26
CHD3-204ENST00000439235 FANCD2Q9BXW9 1451 aa35.39■■■■□ 3.26
CHD3-204ENST00000439235 CEP164Q9UPV0 1460 aa35.28■■■■□ 3.24
CHD3-204ENST00000439235 KIF21AQ7Z4S6 1674 aa35.21■■■■□ 3.23
CHD3-204ENST00000439235 ABCC8Q09428 1581 aa35.2■■■■□ 3.23
CHD3-204ENST00000439235 ERCC6Q03468 1493 aa35.18■■■■□ 3.22
CHD3-204ENST00000439235 WRNQ14191 1432 aaPredicted RBP eCLIP35.15■■■■□ 3.22
CHD3-204ENST00000439235 CHIC1Q5VXU3 224 aa35.1■■■■□ 3.21
CHD3-204ENST00000439235 MRC2Q9UBG0 1479 aa35.03■■■■□ 3.2
CHD3-204ENST00000439235 CUX1P39880 1505 aa35■■■■□ 3.19
CHD3-204ENST00000439235 SYNJ1O43426 1573 aa35■■■■□ 3.19
CHD3-204ENST00000439235 DNMBPQ6XZF7 1577 aa34.99■■■■□ 3.19
CHD3-204ENST00000439235 TOP2BQ02880 1626 aa34.97■■■■□ 3.19
CHD3-204ENST00000439235 URB2Q14146 1524 aaKnown RBP34.96■■■■□ 3.19
CHD3-204ENST00000439235 BIVM-ERCC5R4GMW8 1640 aa34.95■■■■□ 3.19
CHD3-204ENST00000439235 TRIM41Q8WV44 630 aa34.95■■■■□ 3.19
CHD3-204ENST00000439235 TOPBP1Q92547 1522 aa34.92■■■■□ 3.18
CHD3-204ENST00000439235 THOC2Q8NI27 1593 aaKnown RBP34.9■■■■□ 3.18
CHD3-204ENST00000439235 WDR62O43379 1518 aa34.87■■■■□ 3.17
CHD3-204ENST00000439235 FGD5Q6ZNL6 1462 aa34.75■■■■□ 3.15
CHD3-204ENST00000439235 POLA1P09884 1462 aaPredicted RBP34.69■■■■□ 3.14
CHD3-204ENST00000439235 SOGA1O94964 1423 aa34.56■■■■□ 3.12
CHD3-204ENST00000439235 CUX2O14529 1486 aa34.52■■■■□ 3.12
CHD3-204ENST00000439235 RAD54L2Q9Y4B4 1467 aa34.51■■■■□ 3.11
CHD3-204ENST00000439235 IFT140Q96RY7 1462 aa34.5■■■■□ 3.11
CHD3-204ENST00000439235 ABCA10Q8WWZ4 1543 aa34.46■■■■□ 3.11
CHD3-204ENST00000439235 TARBP1Q13395 1621 aaKnown RBP34.45■■■■□ 3.11
CHD3-204ENST00000439235 WDR97A6NE52 1622 aa34.41■■■■□ 3.1
CHD3-204ENST00000439235 EEA1Q15075 1411 aa34.37■■■■□ 3.09
CHD3-204ENST00000439235 KIF27Q86VH2 1401 aa34.36■■■■□ 3.09
CHD3-204ENST00000439235 RUSC2Q8N2Y8 1516 aa34.25■■■■□ 3.07
CHD3-204ENST00000439235 ABCA5Q8WWZ7 1642 aa34.24■■■■□ 3.07
CHD3-204ENST00000439235 TDRD9Q8NDG6 1382 aaKnown RBP34.23■■■■□ 3.07
CHD3-204ENST00000439235 ZNF608Q9ULD9 1512 aaPredicted RBP34.2■■■■□ 3.07
CHD3-204ENST00000439235 FAM9AQ8IZU1 332 aaPredicted RBP34.19■■■■□ 3.06
CHD3-204ENST00000439235 GAPVD1Q14C86 1478 aa34.19■■■■□ 3.06
CHD3-204ENST00000439235 EIF4G3O43432 1585 aaKnown RBP34.15■■■■□ 3.06
CHD3-204ENST00000439235 AQRO60306 1485 aaKnown RBP eCLIP34.14■■■■□ 3.067e-9■■■■■ 40.5
CHD3-204ENST00000439235 CSRNP3Q8WYN3 585 aa34.1■■■■□ 3.05
CHD3-204ENST00000439235 ERICH3Q5RHP9 1530 aa34.08■■■■□ 3.05
CHD3-204ENST00000439235 GRIN2BQ13224 1484 aa34.07■■■■□ 3.05
CHD3-204ENST00000439235 PBRM1Q86U86 1689 aa34.05■■■■□ 3.04
CHD3-204ENST00000439235 IGF1RP08069 1367 aa34.04■■■■□ 3.04
CHD3-204ENST00000439235 CUL7Q14999 1698 aa33.97■■■■□ 3.03
CHD3-204ENST00000439235 PRXQ9BXM0 1461 aa33.91■■■■□ 3.02
CHD3-204ENST00000439235 KIF21BO75037 1637 aa33.9■■■■□ 3.02
CHD3-204ENST00000439235 SNAPC4Q5SXM2 1469 aa33.89■■■■□ 3.02
CHD3-204ENST00000439235 MAGI1Q96QZ7 1491 aaPredicted RBP33.89■■■■□ 3.02
CHD3-204ENST00000439235 CARMIL1Q5VZK9 1371 aa33.89■■■■□ 3.02
CHD3-204ENST00000439235 ADAMTS12P58397 1594 aa33.86■■■■□ 3.01
CHD3-204ENST00000439235 FHAD1B1AJZ9 1412 aa33.85■■■■□ 3.01
CHD3-204ENST00000439235 RAPGEF2Q9Y4G8 1499 aa33.82■■■■□ 3
CHD3-204ENST00000439235 GOLGA3Q08378 1498 aa33.8■■■■□ 3
CHD3-204ENST00000439235 SYNJ2O15056 1496 aa33.74■■■□□ 2.99
CHD3-204ENST00000439235 EHMT2Q96KQ7 1210 aa33.65■■■□□ 2.98
CHD3-204ENST00000439235 CHMP7Q8WUX9 453 aaPredicted RBP33.63■■■□□ 2.97
CHD3-204ENST00000439235 GRIN2AQ12879 1464 aa33.63■■■□□ 2.97
CHD3-204ENST00000439235 LOC105371045A0A1W2PR82 267 aa33.62■■■□□ 2.97
CHD3-204ENST00000439235 UBTFP17480 764 aaKnown RBP33.58■■■□□ 2.97
CHD3-204ENST00000439235 FBLN2P98095 1184 aa33.55■■■□□ 2.96
CHD3-204ENST00000439235 CHD1O14646 1710 aa33.51■■■□□ 2.96
CHD3-204ENST00000439235 TNIKQ9UKE5 1360 aa33.51■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms