Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
BRCA1P38398 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 RP9P-202ENST00000450133 1212 ntBASIC31.35■■■□□ 2.61
BRCA1P38398 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.35■■■□□ 2.61
BRCA1P38398 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 SMPD5-203ENST00000639008 1464 ntBASIC31.34■■■□□ 2.61
BRCA1P38398 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
BRCA1P38398 AC103724.3-201ENST00000564481 992 ntBASIC31.34■■■□□ 2.61
BRCA1P38398 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.33■■■□□ 2.61
BRCA1P38398 AC103834.1-201ENST00000520383 144 ntBASIC31.33■■■□□ 2.61
BRCA1P38398 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
BRCA1P38398 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
BRCA1P38398 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.33■■■□□ 2.61
BRCA1P38398 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.33■■■□□ 2.61
BRCA1P38398 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
BRCA1P38398 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.61
BRCA1P38398 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
BRCA1P38398 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.32■■■□□ 2.6
BRCA1P38398 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
BRCA1P38398 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
BRCA1P38398 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
BRCA1P38398 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.31■■■□□ 2.6
BRCA1P38398 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.3■■■□□ 2.6
BRCA1P38398 MIR6765-201ENST00000614092 87 ntBASIC31.3■■■□□ 2.6
BRCA1P38398 AC074183.2-201ENST00000623112 922 ntBASIC31.3■■■□□ 2.6
BRCA1P38398 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.3■■■□□ 2.6
BRCA1P38398 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.3■■■□□ 2.6
BRCA1P38398 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
BRCA1P38398 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.29■■■□□ 2.6
BRCA1P38398 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.29■■■□□ 2.6
BRCA1P38398 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
BRCA1P38398 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.29■■■□□ 2.6
BRCA1P38398 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.28■■■□□ 2.6
BRCA1P38398 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
BRCA1P38398 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
BRCA1P38398 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.27■■■□□ 2.6
BRCA1P38398 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
BRCA1P38398 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
BRCA1P38398 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
BRCA1P38398 AC139795.1-202ENST00000500444 432 ntBASIC31.26■■■□□ 2.59
BRCA1P38398 AL135925.1-201ENST00000605920 1701 ntBASIC31.26■■■□□ 2.59
BRCA1P38398 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.25■■■□□ 2.59
BRCA1P38398 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.25■■■□□ 2.59
BRCA1P38398 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
BRCA1P38398 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
BRCA1P38398 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
BRCA1P38398 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
BRCA1P38398 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.23■■■□□ 2.59
BRCA1P38398 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.23■■■□□ 2.59
BRCA1P38398 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
BRCA1P38398 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
BRCA1P38398 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
BRCA1P38398 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.22■■■□□ 2.59
BRCA1P38398 MIR935-201ENST00000401179 91 ntBASIC31.22■■■□□ 2.59
BRCA1P38398 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
BRCA1P38398 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC31.21■■■□□ 2.59
BRCA1P38398 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
BRCA1P38398 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
BRCA1P38398 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
BRCA1P38398 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.21■■■□□ 2.59
BRCA1P38398 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
BRCA1P38398 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.21■■■□□ 2.59
BRCA1P38398 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
BRCA1P38398 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
BRCA1P38398 AL356441.2-201ENST00000443009 864 ntBASIC31.2■■■□□ 2.58
BRCA1P38398 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.19■■■□□ 2.58
BRCA1P38398 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.19■■■□□ 2.58
BRCA1P38398 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
BRCA1P38398 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
BRCA1P38398 YBX1P4-201ENST00000392794 808 ntBASIC31.18■■■□□ 2.58
BRCA1P38398 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 BHLHE23-202ENST00000612929 1109 ntBASIC31.18■■■□□ 2.58
BRCA1P38398 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.17■■■□□ 2.58
BRCA1P38398 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
BRCA1P38398 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.17■■■□□ 2.58
BRCA1P38398 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
BRCA1P38398 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
BRCA1P38398 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
BRCA1P38398 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
BRCA1P38398 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.15■■■□□ 2.58
BRCA1P38398 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
BRCA1P38398 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
BRCA1P38398 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.13■■■□□ 2.57
BRCA1P38398 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
BRCA1P38398 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
BRCA1P38398 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
BRCA1P38398 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms