Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
BRCA1P38398 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 RP9P-202ENST00000450133 1212 ntBASIC31.35■■■□□ 2.61
BRCA1P38398 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.35■■■□□ 2.61
BRCA1P38398 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
BRCA1P38398 SMPD5-203ENST00000639008 1464 ntBASIC31.34■■■□□ 2.61
BRCA1P38398 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.34■■■□□ 2.61
BRCA1P38398 AC103724.3-201ENST00000564481 992 ntBASIC31.34■■■□□ 2.61
BRCA1P38398 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.33■■■□□ 2.61
BRCA1P38398 AC103834.1-201ENST00000520383 144 ntBASIC31.33■■■□□ 2.61
BRCA1P38398 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
BRCA1P38398 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
BRCA1P38398 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC31.33■■■□□ 2.61
BRCA1P38398 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC31.33■■■□□ 2.61
BRCA1P38398 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
BRCA1P38398 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.61
BRCA1P38398 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
BRCA1P38398 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.32■■■□□ 2.6
BRCA1P38398 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
BRCA1P38398 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
BRCA1P38398 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
BRCA1P38398 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC31.31■■■□□ 2.6
BRCA1P38398 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC31.31■■■□□ 2.6
BRCA1P38398 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.3■■■□□ 2.6
BRCA1P38398 MIR6765-201ENST00000614092 87 ntBASIC31.3■■■□□ 2.6
BRCA1P38398 AC074183.2-201ENST00000623112 922 ntBASIC31.3■■■□□ 2.6
BRCA1P38398 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.3■■■□□ 2.6
BRCA1P38398 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC31.3■■■□□ 2.6
BRCA1P38398 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
BRCA1P38398 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.29■■■□□ 2.6
BRCA1P38398 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC31.29■■■□□ 2.6
BRCA1P38398 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
BRCA1P38398 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.29■■■□□ 2.6
BRCA1P38398 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.28■■■□□ 2.6
BRCA1P38398 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.28■■■□□ 2.6
BRCA1P38398 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.28■■■□□ 2.6
BRCA1P38398 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.27■■■□□ 2.6
BRCA1P38398 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
BRCA1P38398 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
BRCA1P38398 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
BRCA1P38398 AC139795.1-202ENST00000500444 432 ntBASIC31.26■■■□□ 2.59
BRCA1P38398 AL135925.1-201ENST00000605920 1701 ntBASIC31.26■■■□□ 2.59
BRCA1P38398 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC31.25■■■□□ 2.59
BRCA1P38398 LSM7-203ENST00000585409 512 ntTSL 2 BASIC31.25■■■□□ 2.59
BRCA1P38398 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
BRCA1P38398 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
BRCA1P38398 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
BRCA1P38398 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.23■■■□□ 2.59
BRCA1P38398 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC31.23■■■□□ 2.59
BRCA1P38398 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.23■■■□□ 2.59
BRCA1P38398 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
BRCA1P38398 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.22■■■□□ 2.59
BRCA1P38398 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
BRCA1P38398 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.22■■■□□ 2.59
BRCA1P38398 MIR935-201ENST00000401179 91 ntBASIC31.22■■■□□ 2.59
BRCA1P38398 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
BRCA1P38398 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC31.21■■■□□ 2.59
BRCA1P38398 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
BRCA1P38398 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.21■■■□□ 2.59
BRCA1P38398 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
BRCA1P38398 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC31.21■■■□□ 2.59
BRCA1P38398 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
BRCA1P38398 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.21■■■□□ 2.59
BRCA1P38398 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
BRCA1P38398 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
BRCA1P38398 AL356441.2-201ENST00000443009 864 ntBASIC31.2■■■□□ 2.58
BRCA1P38398 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.19■■■□□ 2.58
BRCA1P38398 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.19■■■□□ 2.58
BRCA1P38398 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
BRCA1P38398 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
BRCA1P38398 YBX1P4-201ENST00000392794 808 ntBASIC31.18■■■□□ 2.58
BRCA1P38398 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 BHLHE23-202ENST00000612929 1109 ntBASIC31.18■■■□□ 2.58
BRCA1P38398 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.18■■■□□ 2.58
BRCA1P38398 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.17■■■□□ 2.58
BRCA1P38398 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
BRCA1P38398 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.17■■■□□ 2.58
BRCA1P38398 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.16■■■□□ 2.58
BRCA1P38398 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
BRCA1P38398 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
BRCA1P38398 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.16■■■□□ 2.58
BRCA1P38398 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.15■■■□□ 2.58
BRCA1P38398 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
BRCA1P38398 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.14■■■□□ 2.58
BRCA1P38398 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
BRCA1P38398 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC31.13■■■□□ 2.57
BRCA1P38398 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
BRCA1P38398 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC31.13■■■□□ 2.57
BRCA1P38398 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
BRCA1P38398 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms