Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 COPZ1-215ENST00000552362 575 ntTSL 4 BASIC13.63□□□□□ -0.231e-13■■■□□ 16.8
UPF1Q92900 COPZ1-212ENST00000551779 1462 ntAPPRIS ALT1 TSL 2 BASIC12.86□□□□□ -0.351e-13■■■□□ 16.8
UPF1Q92900 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC12.2□□□□□ -0.461e-13■■■□□ 16.8
UPF1Q92900 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC10.17□□□□□ -0.781e-13■■■□□ 16.8
UPF1Q92900 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.392e-6■■■□□ 16.8
UPF1Q92900 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.18□□□□□ -1.422e-6■■■□□ 16.8
UPF1Q92900 BCL2L13-204ENST00000399777 2677 ntTSL 1 (best)12.45□□□□□ -0.423e-7■■■□□ 16.8
UPF1Q92900 HMGB1-202ENST00000339872 2319 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.071e-11■■■□□ 16.8
UPF1Q92900 HMGB1-206ENST00000405805 4199 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.531e-11■■■□□ 16.8
UPF1Q92900 HMGB1-203ENST00000341423 5485 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.821e-11■■■□□ 16.8
UPF1Q92900 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.79■□□□□ 0.447e-9■■■□□ 16.8
UPF1Q92900 KANK1-203ENST00000382289 1926 ntTSL 1 (best)13.64□□□□□ -0.237e-9■■■□□ 16.8
UPF1Q92900 KANK1-202ENST00000382286 2266 ntTSL 212.83□□□□□ -0.367e-9■■■□□ 16.8
UPF1Q92900 KANK1-206ENST00000382303 5581 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.687e-9■■■□□ 16.8
UPF1Q92900 KANK1-209ENST00000489369 7193 ntTSL 510.52□□□□□ -0.737e-9■■■□□ 16.8
UPF1Q92900 KANK1-210ENST00000619269 5688 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.87e-9■■■□□ 16.8
UPF1Q92900 KANK1-205ENST00000382297 5051 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.887e-9■■■□□ 16.8
UPF1Q92900 PRR13-201ENST00000379786 927 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.022e-8■■■□□ 16.8
UPF1Q92900 PRR13-202ENST00000429243 1229 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.072e-8■■■□□ 16.8
UPF1Q92900 AC023509.1-201ENST00000547717 1571 ntTSL 2 BASIC13.05□□□□□ -0.322e-8■■■□□ 16.8
UPF1Q92900 PRR13-203ENST00000546581 810 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.442e-8■■■□□ 16.8
UPF1Q92900 PRR13-210ENST00000551003 1009 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.442e-8■■■□□ 16.8
UPF1Q92900 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.81■□□□□ 0.763e-7■■■□□ 16.8
UPF1Q92900 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.483e-7■■■□□ 16.8
UPF1Q92900 C2CD2L-202ENST00000525598 5931 ntTSL 1 (best)11.71□□□□□ -0.533e-7■■■□□ 16.8
UPF1Q92900 ST3GAL1-207ENST00000521180 6951 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.733e-6■■■□□ 16.8
UPF1Q92900 ST3GAL1-201ENST00000399640 6764 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.843e-6■■■□□ 16.8
UPF1Q92900 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.482e-15■■■□□ 16.8
UPF1Q92900 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.82e-15■■■□□ 16.8
UPF1Q92900 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.642e-15■■■□□ 16.8
UPF1Q92900 LPIN1-205ENST00000404113 4005 ntTSL 1 (best)10.3□□□□□ -0.764e-8■■■□□ 16.8
UPF1Q92900 LPIN1-215ENST00000475922 5432 ntTSL 28.43□□□□□ -1.064e-8■■■□□ 16.8
UPF1Q92900 PPT1-214ENST00000641381 618 nt9.74□□□□□ -0.857e-14■■■□□ 16.8
UPF1Q92900 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.78■□□□□ 0.444e-8■■■□□ 16.8
UPF1Q92900 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.677e-7■■■□□ 16.8
UPF1Q92900 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.387e-7■■■□□ 16.8
UPF1Q92900 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.162e-6■■■□□ 16.8
UPF1Q92900 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.6■□□□□ 0.092e-6■■■□□ 16.8
UPF1Q92900 TK1-205ENST00000590862 642 ntTSL 3 BASIC25.26■■□□□ 1.635e-12■■■□□ 16.8
UPF1Q92900 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.235e-12■■■□□ 16.8
UPF1Q92900 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.97■□□□□ 0.155e-12■■■□□ 16.8
UPF1Q92900 PTPRN2-202ENST00000389416 4692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.185e-12■■■□□ 16.8
UPF1Q92900 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.285e-12■■■□□ 16.8
UPF1Q92900 TNFRSF1A-205ENST00000534885 2069 ntTSL 1 (best)24.46■■□□□ 1.516e-8■■■□□ 16.8
UPF1Q92900 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.296e-8■■■□□ 16.8
UPF1Q92900 KIF18B-202ENST00000587309 4217 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.632e-6■■■□□ 16.8
UPF1Q92900 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.81■□□□□ 0.447e-7■■■□□ 16.8
UPF1Q92900 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC16.6■□□□□ 0.257e-7■■■□□ 16.8
UPF1Q92900 MAX-212ENST00000555932 1673 ntTSL 5 BASIC15.63■□□□□ 0.097e-7■■■□□ 16.8
UPF1Q92900 MAX-206ENST00000394606 2097 ntTSL 1 (best)14.09□□□□□ -0.157e-7■■■□□ 16.8
UPF1Q92900 MAX-202ENST00000284165 3155 ntTSL 1 (best) BASIC12.16□□□□□ -0.467e-7■■■□□ 16.8
UPF1Q92900 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.17□□□□□ -1.427e-7■■■□□ 16.8
UPF1Q92900 AC005726.2-201ENST00000481916 2091 ntTSL 1 (best)23.18■■□□□ 1.34e-8■■■□□ 16.7
UPF1Q92900 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC6.5□□□□□ -1.371e-10■■■□□ 16.7
UPF1Q92900 C22orf39-204ENST00000509549 2979 ntTSL 214.51□□□□□ -0.095e-8■■■□□ 16.7
UPF1Q92900 THRAP3-203ENST00000469141 3339 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.067e-7■■■□□ 16.7
UPF1Q92900 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.082e-7■■■□□ 16.7
UPF1Q92900 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.232e-7■■■□□ 16.7
UPF1Q92900 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.062e-8■■■□□ 16.7
UPF1Q92900 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.832e-12■■■□□ 16.7
UPF1Q92900 ACTB-204ENST00000425660 1845 ntTSL 1 (best)18.19■□□□□ 0.52e-12■■■□□ 16.7
UPF1Q92900 ACTB-207ENST00000462494 2245 ntTSL 517.04■□□□□ 0.322e-12■■■□□ 16.7
UPF1Q92900 ACTB-208ENST00000464611 715 ntTSL 510□□□□□ -0.812e-12■■■□□ 16.7
UPF1Q92900 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22■■□□□ 1.112e-11■■■□□ 16.7
UPF1Q92900 PLEKHA2-202ENST00000518939 669 ntTSL 512.91□□□□□ -0.342e-11■■■□□ 16.7
UPF1Q92900 PLEKHA2-207ENST00000616834 3594 ntTSL 5 BASIC12.67□□□□□ -0.382e-11■■■□□ 16.7
UPF1Q92900 HNRNPU-214ENST00000638475 2698 ntTSL 518.16■□□□□ 0.53e-39■■■□□ 16.7
UPF1Q92900 HNRNPU-221ENST00000639824 1450 ntTSL 512.42□□□□□ -0.423e-39■■■□□ 16.7
UPF1Q92900 FAM213B-211ENST00000481683 689 ntTSL 232■■■□□ 2.715e-9■■■□□ 16.7
UPF1Q92900 FAM213B-210ENST00000477045 619 ntTSL 231.47■■■□□ 2.635e-9■■■□□ 16.7
UPF1Q92900 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.525e-9■■■□□ 16.7
UPF1Q92900 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.93■□□□□ 0.785e-9■■■□□ 16.7
UPF1Q92900 CSK-204ENST00000563010 721 ntTSL 219.8■□□□□ 0.766e-13■■■□□ 16.7
UPF1Q92900 CSK-211ENST00000568329 1552 ntTSL 519.18■□□□□ 0.666e-13■■■□□ 16.7
UPF1Q92900 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.425e-9■■■□□ 16.7
UPF1Q92900 ERBB2-218ENST00000584450 3730 ntTSL 1 (best) BASIC11.93□□□□□ -0.52e-6■■■□□ 16.7
UPF1Q92900 GATAD1-203ENST00000493878 2017 ntTSL 1 (best)11.67□□□□□ -0.545e-9■■■□□ 16.7
UPF1Q92900 PAK4-211ENST00000600350 549 ntTSL 217.77■□□□□ 0.446e-8■■■□□ 16.7
UPF1Q92900 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC30.8■■■□□ 2.529e-9■■■□□ 16.7
UPF1Q92900 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC12.62□□□□□ -0.396e-7■■■□□ 16.7
UPF1Q92900 ERAP1-202ENST00000443439 4805 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.086e-7■■■□□ 16.7
UPF1Q92900 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.333e-8■■■□□ 16.6
UPF1Q92900 LIG3-202ENST00000378526 8400 ntAPPRIS P4 TSL 1 (best) BASIC8.74□□□□□ -1.011e-6■■■□□ 16.6
UPF1Q92900 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.061e-6■■■□□ 16.6
UPF1Q92900 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC24.78■■□□□ 1.567e-50■■■□□ 16.6
UPF1Q92900 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.233e-15■■■□□ 16.6
UPF1Q92900 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.233e-15■■■□□ 16.6
UPF1Q92900 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC33.97■■■■□ 3.034e-8■■■□□ 16.6
UPF1Q92900 AC009163.4-202ENST00000561887 137 ntTSL 215.85■□□□□ 0.134e-8■■■□□ 16.6
UPF1Q92900 AC009163.4-203ENST00000566594 254 ntTSL 215.85■□□□□ 0.134e-8■■■□□ 16.6
UPF1Q92900 TMEM170A-205ENST00000568559 4345 ntTSL 1 (best)13.81□□□□□ -0.24e-8■■■□□ 16.6
UPF1Q92900 TMEM170A-201ENST00000357613 4959 ntTSL 1 (best) BASIC12.58□□□□□ -0.44e-8■■■□□ 16.6
UPF1Q92900 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.842e-6■■■□□ 16.6
UPF1Q92900 RAD9A-204ENST00000535644 1624 ntTSL 320.64■□□□□ 0.892e-6■■■□□ 16.6
UPF1Q92900 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.59■■□□□ 1.217e-7■■■□□ 16.6
UPF1Q92900 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.187e-7■■■□□ 16.6
UPF1Q92900 TCAIM-212ENST00000494638 594 ntTSL 414.67□□□□□ -0.067e-7■■■□□ 16.6
UPF1Q92900 TCAIM-208ENST00000444602 1056 ntTSL 2 BASIC14.19□□□□□ -0.147e-7■■■□□ 16.6
UPF1Q92900 TCAIM-205ENST00000417237 1844 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.317e-7■■■□□ 16.6
UPF1Q92900 TCAIM-202ENST00000383746 1998 ntTSL 1 (best) BASIC12.6□□□□□ -0.397e-7■■■□□ 16.6
Retrieved 100 of 15,879 protein–RNA pairs in 106 ms