RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 NISCHQ9Y2I1 1504 aa22.54■■□□□ 1.2
HMGB1-206ENST00000405805 DCAF8L2P0C7V8 631 aa20.57■□□□□ 0.88
HMGB1-206ENST00000405805 SUPT5HO00267 1087 aaKnown RBP20.5■□□□□ 0.87
HMGB1-206ENST00000405805 SHROOM4Q9ULL8 1493 aa20.5■□□□□ 0.87
HMGB1-206ENST00000405805 PCGF6Q9BYE7 350 aa19.65■□□□□ 0.74
HMGB1-206ENST00000405805 EHMT2Q96KQ7 1210 aa19.58■□□□□ 0.73
HMGB1-206ENST00000405805 PELP1Q8IZL8 1130 aaKnown RBP19.46■□□□□ 0.71
HMGB1-206ENST00000405805 PPARGC1BQ86YN6 1023 aaKnown RBP19.24■□□□□ 0.67
HMGB1-206ENST00000405805 FAM9AQ8IZU1 332 aaPredicted RBP19.22■□□□□ 0.67
HMGB1-206ENST00000405805 HRCP23327 699 aa19.15■□□□□ 0.66
HMGB1-206ENST00000405805 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
HMGB1-206ENST00000405805 LOC105371045A0A1W2PR82 267 aa19.14■□□□□ 0.66
HMGB1-206ENST00000405805 MYT1Q01538 1121 aa19.07■□□□□ 0.64
HMGB1-206ENST00000405805 TTBK1Q5TCY1 1321 aaPredicted RBP18.92■□□□□ 0.62
HMGB1-206ENST00000405805 ZCCHC6Q5VYS8 1495 aaKnown RBP18.87■□□□□ 0.61
HMGB1-206ENST00000405805 TRIM41Q8WV44 630 aa18.74■□□□□ 0.59
HMGB1-206ENST00000405805 CCDC180Q9P1Z9 1646 aa18.67■□□□□ 0.58
HMGB1-206ENST00000405805 TRIM26Q12899 539 aaPredicted RBP18.64■□□□□ 0.57
HMGB1-206ENST00000405805 ABCC9O60706 1549 aa18.6■□□□□ 0.57
HMGB1-206ENST00000405805 MYO15BQ96JP2 1530 aa18.59■□□□□ 0.57
HMGB1-206ENST00000405805 CCER1Q8TC90 406 aaPredicted RBP18.48■□□□□ 0.55
HMGB1-206ENST00000405805 ZEB1P37275 1124 aaPredicted RBP18.39■□□□□ 0.53
HMGB1-206ENST00000405805 RANGAP1P46060 587 aaPredicted RBP18.36■□□□□ 0.53
HMGB1-206ENST00000405805 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.33■□□□□ 0.52
HMGB1-206ENST00000405805 SCRIBQ14160 1630 aa18.28■□□□□ 0.52
HMGB1-206ENST00000405805 YTHDC1Q96MU7 727 aaKnown RBP18.27■□□□□ 0.52
HMGB1-206ENST00000405805 CENPBP07199 599 aaPredicted RBP18.21■□□□□ 0.51
HMGB1-206ENST00000405805 PABPN1Q86U42 306 aaKnown RBP eCLIP18.17■□□□□ 0.5
HMGB1-206ENST00000405805 UBTFP17480 764 aaKnown RBP18.15■□□□□ 0.5
HMGB1-206ENST00000405805 DCAF1Q9Y4B6 1507 aa18.02■□□□□ 0.48
HMGB1-206ENST00000405805 RSF1Q96T23 1441 aaPredicted RBP18■□□□□ 0.47
HMGB1-206ENST00000405805 APLP2Q06481 763 aa17.99■□□□□ 0.47
HMGB1-206ENST00000405805 HNRNPUL2Q1KMD3 747 aaKnown RBP17.97■□□□□ 0.47
HMGB1-206ENST00000405805 DIEXFQ68CQ4 756 aaKnown RBP17.95■□□□□ 0.46
HMGB1-206ENST00000405805 SCAF1Q9H7N4 1312 aaKnown RBP17.95■□□□□ 0.46
HMGB1-206ENST00000405805 GTF3C3Q9Y5Q9 886 aa17.9■□□□□ 0.46
HMGB1-206ENST00000405805 ERICH6Q7L0X2 663 aa17.88■□□□□ 0.45
HMGB1-206ENST00000405805 CECR2Q9BXF3 1484 aa17.85■□□□□ 0.45
HMGB1-206ENST00000405805 NEUROD1Q13562 356 aa17.79■□□□□ 0.44
HMGB1-206ENST00000405805 ACIN1Q9UKV3 1341 aaKnown RBP17.75■□□□□ 0.43
HMGB1-206ENST00000405805 ITGAEP38570 1179 aa17.71■□□□□ 0.43
HMGB1-206ENST00000405805 NACADO15069 1562 aa17.69■□□□□ 0.42
HMGB1-206ENST00000405805 RB1CC1Q8TDY2 1594 aa17.66■□□□□ 0.42
HMGB1-206ENST00000405805 MROH2BQ7Z745 1585 aa17.63■□□□□ 0.41
HMGB1-206ENST00000405805 ATP1B4Q9UN42 357 aaPredicted RBP17.62■□□□□ 0.41
HMGB1-206ENST00000405805 ZNF316A6NFI3 1004 aaPredicted RBP17.53■□□□□ 0.4
HMGB1-206ENST00000405805 CSRNP3Q8WYN3 585 aa17.48■□□□□ 0.39
HMGB1-206ENST00000405805 BCL11AQ9H165 835 aa17.46■□□□□ 0.39
HMGB1-206ENST00000405805 WIZO95785 1651 aa17.45■□□□□ 0.38
HMGB1-206ENST00000405805 MIER1Q8N108 512 aa17.41■□□□□ 0.38
HMGB1-206ENST00000405805 BCANQ96GW7 911 aa17.38■□□□□ 0.37
HMGB1-206ENST00000405805 BAZ1AQ9NRL2 1556 aaPredicted RBP17.37■□□□□ 0.37
HMGB1-206ENST00000405805 ABCC8Q09428 1581 aa17.29■□□□□ 0.36
HMGB1-206ENST00000405805 CCDC88BA6NC98 1476 aa17.28■□□□□ 0.36
HMGB1-206ENST00000405805 SOGA1O94964 1423 aa17.26■□□□□ 0.35
HMGB1-206ENST00000405805 CNGB1Q14028 1251 aaPredicted RBP17.21■□□□□ 0.35
HMGB1-206ENST00000405805 NEFLP07196 543 aa17.19■□□□□ 0.34
HMGB1-206ENST00000405805 CEP162Q5TB80 1403 aa17.18■□□□□ 0.34
HMGB1-206ENST00000405805 WRNQ14191 1432 aaPredicted RBP eCLIP17.15■□□□□ 0.34
HMGB1-206ENST00000405805 FAM50AQ14320 339 aaKnown RBP17.14■□□□□ 0.33
HMGB1-206ENST00000405805 BAZ1BQ9UIG0 1483 aaKnown RBP17.1■□□□□ 0.33
HMGB1-206ENST00000405805 P3H3Q8IVL6 736 aa17.1■□□□□ 0.33
HMGB1-206ENST00000405805 EIF5BO60841 1220 aaKnown RBP17.09■□□□□ 0.33
HMGB1-206ENST00000405805 HIRIP3Q9BW71 556 aaPredicted RBP17.08■□□□□ 0.33
HMGB1-206ENST00000405805 TOP2AP11388 1531 aaKnown RBP17.08■□□□□ 0.32
HMGB1-206ENST00000405805 SMARCA4P51532 1647 aa17.08■□□□□ 0.32
HMGB1-206ENST00000405805 RUSC2Q8N2Y8 1516 aa17.07■□□□□ 0.32
HMGB1-206ENST00000405805 TNIKQ9UKE5 1360 aa17.01■□□□□ 0.31
HMGB1-206ENST00000405805 DDX10Q13206 875 aaKnown RBP17■□□□□ 0.31
HMGB1-206ENST00000405805 CLIP1P30622 1438 aa16.99■□□□□ 0.31
HMGB1-206ENST00000405805 ANP32EQ9BTT0 268 aa16.98■□□□□ 0.31
HMGB1-206ENST00000405805 GOLGA3Q08378 1498 aa16.97■□□□□ 0.31
HMGB1-206ENST00000405805 POLR3GLQ9BT43 218 aa16.97■□□□□ 0.31
HMGB1-206ENST00000405805 SMARCA2P51531 1590 aa16.95■□□□□ 0.3
HMGB1-206ENST00000405805 PRKCSHP14314 528 aaPredicted RBP16.95■□□□□ 0.3
HMGB1-206ENST00000405805 FKBP8Q14318 412 aa16.95■□□□□ 0.3
HMGB1-206ENST00000405805 TRIM52Q96A61 297 aa16.94■□□□□ 0.3
HMGB1-206ENST00000405805 EEA1Q15075 1411 aa16.94■□□□□ 0.3
HMGB1-206ENST00000405805 ATAD2BQ9ULI0 1458 aa16.92■□□□□ 0.3
HMGB1-206ENST00000405805 RTL5Q5HYW3 569 aaPredicted RBP16.89■□□□□ 0.3
HMGB1-206ENST00000405805 CEP164Q9UPV0 1460 aa16.85■□□□□ 0.29
HMGB1-206ENST00000405805 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
HMGB1-206ENST00000405805 SUPT16HQ9Y5B9 1047 aaKnown RBP16.81■□□□□ 0.28
HMGB1-206ENST00000405805 KANK4Q5T7N3 995 aaPredicted RBP16.81■□□□□ 0.28
HMGB1-206ENST00000405805 IRX6P78412 446 aaPredicted RBP16.81■□□□□ 0.28
HMGB1-206ENST00000405805 ANP32CO43423 234 aa16.81■□□□□ 0.28
HMGB1-206ENST00000405805 KCNH8Q96L42 1107 aa16.8■□□□□ 0.28
HMGB1-206ENST00000405805 SIN3AQ96ST3 1273 aa16.79■□□□□ 0.28
HMGB1-206ENST00000405805 RAPGEF2Q9Y4G8 1499 aa16.75■□□□□ 0.27
HMGB1-206ENST00000405805 BICRAQ9NZM4 1560 aa16.75■□□□□ 0.27
HMGB1-206ENST00000405805 SENP3-EIF4A1A0A087X0R7 540 aa16.72■□□□□ 0.27
HMGB1-206ENST00000405805 KIF27Q86VH2 1401 aa16.71■□□□□ 0.27
HMGB1-206ENST00000405805 RTN4Q9NQC3 1192 aaKnown RBP16.69■□□□□ 0.26
HMGB1-206ENST00000405805 HNRNPUQ00839 825 aaKnown RBP eCLIP16.67■□□□□ 0.26
HMGB1-206ENST00000405805 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
HMGB1-206ENST00000405805 NBR1Q14596 966 aa16.67■□□□□ 0.26
HMGB1-206ENST00000405805 VPS8Q8N3P4 1428 aa16.66■□□□□ 0.26
HMGB1-206ENST00000405805 ZNF326Q5BKZ1 582 aaKnown RBP16.66■□□□□ 0.26
HMGB1-206ENST00000405805 SYNJ1O43426 1573 aa16.64■□□□□ 0.25
HMGB1-206ENST00000405805 CHIC2Q9UKJ5 165 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms