RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 NISCHQ9Y2I1 1504 aa30.11■■■□□ 2.41
HMGB1-202ENST00000339872 CCDC180Q9P1Z9 1646 aa26.23■■□□□ 1.79
HMGB1-202ENST00000339872 ZCCHC6Q5VYS8 1495 aaKnown RBP25.33■■□□□ 1.65
HMGB1-202ENST00000339872 DCAF8L2P0C7V8 631 aa24.89■■□□□ 1.58
HMGB1-202ENST00000339872 DCAF1Q9Y4B6 1507 aa24.85■■□□□ 1.57
HMGB1-202ENST00000339872 ABCC9O60706 1549 aa24.74■■□□□ 1.55
HMGB1-202ENST00000339872 SHROOM4Q9ULL8 1493 aa24.73■■□□□ 1.55
HMGB1-202ENST00000339872 MYO15BQ96JP2 1530 aa24.51■■□□□ 1.51
HMGB1-202ENST00000339872 NACADO15069 1562 aa24.38■■□□□ 1.49
HMGB1-202ENST00000339872 SCRIBQ14160 1630 aa24.19■■□□□ 1.46
HMGB1-202ENST00000339872 RB1CC1Q8TDY2 1594 aa24.17■■□□□ 1.46
HMGB1-202ENST00000339872 SUPT5HO00267 1087 aaKnown RBP23.81■■□□□ 1.4
HMGB1-202ENST00000339872 UNC13AQ9UPW8 1703 aa23.76■■□□□ 1.39
HMGB1-202ENST00000339872 BICRAQ9NZM4 1560 aa23.45■■□□□ 1.34
HMGB1-202ENST00000339872 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
HMGB1-202ENST00000339872 RSF1Q96T23 1441 aaPredicted RBP23.4■■□□□ 1.34
HMGB1-202ENST00000339872 PABPN1Q86U42 306 aaKnown RBP eCLIP23.34■■□□□ 1.33
HMGB1-202ENST00000339872 MROH2BQ7Z745 1585 aa23.3■■□□□ 1.32
HMGB1-202ENST00000339872 BAZ1AQ9NRL2 1556 aaPredicted RBP23.25■■□□□ 1.31
HMGB1-202ENST00000339872 SMARCA4P51532 1647 aa23.16■■□□□ 1.3
HMGB1-202ENST00000339872 WIZO95785 1651 aa23.15■■□□□ 1.3
HMGB1-202ENST00000339872 TOP2AP11388 1531 aaKnown RBP22.86■■□□□ 1.25
HMGB1-202ENST00000339872 PEG3Q9GZU2 1588 aa22.83■■□□□ 1.24
HMGB1-202ENST00000339872 CHIC1Q5VXU3 224 aa22.8■■□□□ 1.24
HMGB1-202ENST00000339872 EIF4G1Q04637 1599 aaKnown RBP22.74■■□□□ 1.23
HMGB1-202ENST00000339872 SMARCA2P51531 1590 aa22.72■■□□□ 1.23
HMGB1-202ENST00000339872 ATAD2BQ9ULI0 1458 aa22.72■■□□□ 1.23
HMGB1-202ENST00000339872 CCDC88BA6NC98 1476 aa22.63■■□□□ 1.21
HMGB1-202ENST00000339872 BAZ1BQ9UIG0 1483 aaKnown RBP22.63■■□□□ 1.21
HMGB1-202ENST00000339872 HMGXB3Q12766 1538 aa22.49■■□□□ 1.19
HMGB1-202ENST00000339872 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
HMGB1-202ENST00000339872 CC2D2AQ9P2K1 1620 aa22.39■■□□□ 1.17
HMGB1-202ENST00000339872 TRIM41Q8WV44 630 aa22.35■■□□□ 1.17
HMGB1-202ENST00000339872 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
HMGB1-202ENST00000339872 WRNQ14191 1432 aaPredicted RBP eCLIP22.04■■□□□ 1.12
HMGB1-202ENST00000339872 CFTRP13569 1480 aa22.03■■□□□ 1.12
HMGB1-202ENST00000339872 PRDM2Q13029 1718 aa22■■□□□ 1.11
HMGB1-202ENST00000339872 FAM9AQ8IZU1 332 aaPredicted RBP21.99■■□□□ 1.11
HMGB1-202ENST00000339872 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
HMGB1-202ENST00000339872 LOC105371045A0A1W2PR82 267 aa21.96■■□□□ 1.11
HMGB1-202ENST00000339872 CADPSQ9ULU8 1353 aa21.92■■□□□ 1.1
HMGB1-202ENST00000339872 TOP2BQ02880 1626 aa21.86■■□□□ 1.09
HMGB1-202ENST00000339872 BIVM-ERCC5R4GMW8 1640 aa21.84■■□□□ 1.09
HMGB1-202ENST00000339872 SOGA1O94964 1423 aa21.81■■□□□ 1.08
HMGB1-202ENST00000339872 CUX1P39880 1505 aa21.78■■□□□ 1.08
HMGB1-202ENST00000339872 DNAJC5BQ9UF47 199 aa21.78■■□□□ 1.08
HMGB1-202ENST00000339872 NESP48681 1621 aa21.76■■□□□ 1.07
HMGB1-202ENST00000339872 EEA1Q15075 1411 aa21.74■■□□□ 1.07
HMGB1-202ENST00000339872 LAMC3Q9Y6N6 1575 aa21.73■■□□□ 1.07
HMGB1-202ENST00000339872 RUSC2Q8N2Y8 1516 aa21.73■■□□□ 1.07
HMGB1-202ENST00000339872 EHMT2Q96KQ7 1210 aa21.73■■□□□ 1.07
HMGB1-202ENST00000339872 FANCD2Q9BXW9 1451 aa21.72■■□□□ 1.07
HMGB1-202ENST00000339872 CSRNP3Q8WYN3 585 aa21.62■■□□□ 1.05
HMGB1-202ENST00000339872 CEP164Q9UPV0 1460 aa21.57■■□□□ 1.04
HMGB1-202ENST00000339872 DNMBPQ6XZF7 1577 aa21.54■■□□□ 1.04
HMGB1-202ENST00000339872 PDS5BQ9NTI5 1447 aa21.54■■□□□ 1.04
HMGB1-202ENST00000339872 KIF21AQ7Z4S6 1674 aa21.53■■□□□ 1.04
HMGB1-202ENST00000339872 FGD5Q6ZNL6 1462 aa21.53■■□□□ 1.04
HMGB1-202ENST00000339872 KIF21BO75037 1637 aa21.5■■□□□ 1.03
HMGB1-202ENST00000339872 TOPBP1Q92547 1522 aa21.49■■□□□ 1.03
HMGB1-202ENST00000339872 GOLGA3Q08378 1498 aa21.49■■□□□ 1.03
HMGB1-202ENST00000339872 KIF27Q86VH2 1401 aa21.46■■□□□ 1.03
HMGB1-202ENST00000339872 URB2Q14146 1524 aaKnown RBP21.44■■□□□ 1.02
HMGB1-202ENST00000339872 TNIKQ9UKE5 1360 aa21.41■■□□□ 1.02
HMGB1-202ENST00000339872 CUX2O14529 1486 aa21.41■■□□□ 1.02
HMGB1-202ENST00000339872 POLA1P09884 1462 aaPredicted RBP21.4■■□□□ 1.02
HMGB1-202ENST00000339872 UBTFP17480 764 aaKnown RBP21.4■■□□□ 1.02
HMGB1-202ENST00000339872 RAPGEF2Q9Y4G8 1499 aa21.36■■□□□ 1.01
HMGB1-202ENST00000339872 CEP162Q5TB80 1403 aa21.34■■□□□ 1.01
HMGB1-202ENST00000339872 RAD54L2Q9Y4B4 1467 aa21.34■■□□□ 1.01
HMGB1-202ENST00000339872 PRXQ9BXM0 1461 aa21.33■■□□□ 1.01
HMGB1-202ENST00000339872 ERICH3Q5RHP9 1530 aa21.32■■□□□ 1
HMGB1-202ENST00000339872 ABCA10Q8WWZ4 1543 aa21.31■■□□□ 1
HMGB1-202ENST00000339872 WDR97A6NE52 1622 aa21.28■■□□□ 1
HMGB1-202ENST00000339872 MRC2Q9UBG0 1479 aa21.28■■□□□ 1
HMGB1-202ENST00000339872 IGF1RP08069 1367 aa21.24■□□□□ 0.99
HMGB1-202ENST00000339872 ERCC6Q03468 1493 aa21.2■□□□□ 0.98
HMGB1-202ENST00000339872 TARBP1Q13395 1621 aaKnown RBP21.17■□□□□ 0.98
HMGB1-202ENST00000339872 WDR62O43379 1518 aa21.17■□□□□ 0.98
HMGB1-202ENST00000339872 ABCA5Q8WWZ7 1642 aa21.16■□□□□ 0.98
HMGB1-202ENST00000339872 CARMIL1Q5VZK9 1371 aa21.15■□□□□ 0.98
HMGB1-202ENST00000339872 CLIP1P30622 1438 aa21.15■□□□□ 0.98
HMGB1-202ENST00000339872 TDRD9Q8NDG6 1382 aaKnown RBP21.12■□□□□ 0.97
HMGB1-202ENST00000339872 CUL7Q14999 1698 aa21.12■□□□□ 0.97
HMGB1-202ENST00000339872 THOC2Q8NI27 1593 aaKnown RBP21.11■□□□□ 0.97
HMGB1-202ENST00000339872 GAPVD1Q14C86 1478 aa21.09■□□□□ 0.97
HMGB1-202ENST00000339872 PCGF6Q9BYE7 350 aa21.08■□□□□ 0.97
HMGB1-202ENST00000339872 RANGAP1P46060 587 aaPredicted RBP21.07■□□□□ 0.96
HMGB1-202ENST00000339872 PBRM1Q86U86 1689 aa21.03■□□□□ 0.96
HMGB1-202ENST00000339872 IFT140Q96RY7 1462 aa21.02■□□□□ 0.96
HMGB1-202ENST00000339872 TRIM26Q12899 539 aaPredicted RBP21.01■□□□□ 0.95
HMGB1-202ENST00000339872 PPARGC1BQ86YN6 1023 aaKnown RBP20.98■□□□□ 0.95
HMGB1-202ENST00000339872 VPS8Q8N3P4 1428 aa20.97■□□□□ 0.95
HMGB1-202ENST00000339872 AQRO60306 1485 aaKnown RBP eCLIP20.97■□□□□ 0.952e-9■■■■□ 24.4
HMGB1-202ENST00000339872 ZNF608Q9ULD9 1512 aaPredicted RBP20.94■□□□□ 0.94
HMGB1-202ENST00000339872 CTTNBP2Q8WZ74 1663 aa20.94■□□□□ 0.94
HMGB1-202ENST00000339872 ARAP1Q96P48 1450 aa20.93■□□□□ 0.94
HMGB1-202ENST00000339872 ARHGAP35Q9NRY4 1499 aa20.9■□□□□ 0.94
HMGB1-202ENST00000339872 EIF4G3O43432 1585 aaKnown RBP20.9■□□□□ 0.94
HMGB1-202ENST00000339872 GRIN2BQ13224 1484 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms