RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DCAF8L2P0C7V8 631 aa16.09■□□□□ 0.17
HMGB1-203ENST00000341423 FAM9AQ8IZU1 332 aaPredicted RBP14.85□□□□□ -0.03
HMGB1-203ENST00000341423 NISCHQ9Y2I1 1504 aa14.54□□□□□ -0.08
HMGB1-203ENST00000341423 MYT1LQ9UL68 1186 aa13.91□□□□□ -0.18
HMGB1-203ENST00000341423 AEBP2Q6ZN18 517 aaPredicted RBP13.67□□□□□ -0.22
HMGB1-203ENST00000341423 APLP2Q06481 763 aa13.63□□□□□ -0.23
HMGB1-203ENST00000341423 ABCC9O60706 1549 aa13.63□□□□□ -0.23
HMGB1-203ENST00000341423 ATP1B4Q9UN42 357 aaPredicted RBP13.58□□□□□ -0.24
HMGB1-203ENST00000341423 TTBK1Q5TCY1 1321 aaPredicted RBP13.58□□□□□ -0.24
HMGB1-203ENST00000341423 SUPT5HO00267 1087 aaKnown RBP13.55□□□□□ -0.24
HMGB1-203ENST00000341423 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.54□□□□□ -0.24
HMGB1-203ENST00000341423 HNRNPUL2Q1KMD3 747 aaKnown RBP13.54□□□□□ -0.24
HMGB1-203ENST00000341423 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
HMGB1-203ENST00000341423 FBLN2P98095 1184 aa13.5□□□□□ -0.25
HMGB1-203ENST00000341423 NPM1P06748 294 aaKnown RBP eCLIP13.45□□□□□ -0.26
HMGB1-203ENST00000341423 TRHP20396 242 aaPredicted RBP13.43□□□□□ -0.26
HMGB1-203ENST00000341423 SHROOM4Q9ULL8 1493 aa13.43□□□□□ -0.26
HMGB1-203ENST00000341423 ESF1Q9H501 851 aaKnown RBP13.38□□□□□ -0.27
HMGB1-203ENST00000341423 CHIC1Q5VXU3 224 aa13.33□□□□□ -0.28
HMGB1-203ENST00000341423 EHMT2Q96KQ7 1210 aa13.3□□□□□ -0.28
HMGB1-203ENST00000341423 RANGAP1P46060 587 aaPredicted RBP13.29□□□□□ -0.28
HMGB1-203ENST00000341423 TRIM41Q8WV44 630 aa13.28□□□□□ -0.28
HMGB1-203ENST00000341423 PLPPR3Q6T4P5 718 aa13.2□□□□□ -0.3
HMGB1-203ENST00000341423 BCANQ96GW7 911 aa13.11□□□□□ -0.31
HMGB1-203ENST00000341423 UBTFP17480 764 aaKnown RBP12.92□□□□□ -0.34
HMGB1-203ENST00000341423 ERCC6Q03468 1493 aa12.87□□□□□ -0.35
HMGB1-203ENST00000341423 SCAF1Q9H7N4 1312 aaKnown RBP12.86□□□□□ -0.35
HMGB1-203ENST00000341423 ARID4BQ4LE39 1312 aaPredicted RBP12.86□□□□□ -0.35
HMGB1-203ENST00000341423 CHMP7Q8WUX9 453 aaPredicted RBP12.82□□□□□ -0.36
HMGB1-203ENST00000341423 STAG3Q9UJ98 1225 aa12.82□□□□□ -0.36
HMGB1-203ENST00000341423 DCAF8L1A6NGE4 600 aa12.78□□□□□ -0.36
HMGB1-203ENST00000341423 SLC4A1APQ9BWU0 796 aaKnown RBP12.74□□□□□ -0.37
HMGB1-203ENST00000341423 FOXD1Q16676 465 aa12.69□□□□□ -0.38
HMGB1-203ENST00000341423 C14orf37Q86TY3 774 aa12.68□□□□□ -0.38
HMGB1-203ENST00000341423 HAP1P54257 671 aaPredicted RBP12.63□□□□□ -0.39
HMGB1-203ENST00000341423 A0A0G2JS52 829 aa12.61□□□□□ -0.39
HMGB1-203ENST00000341423 PHF23Q9BUL5 403 aaPredicted RBP12.59□□□□□ -0.39
HMGB1-203ENST00000341423 CDK11AQ9UQ88 783 aaPredicted RBP12.58□□□□□ -0.4
HMGB1-203ENST00000341423 MYT1Q01538 1121 aa12.57□□□□□ -0.4
HMGB1-203ENST00000341423 SENP3Q9H4L4 574 aaPredicted RBP12.51□□□□□ -0.41
HMGB1-203ENST00000341423 SLC24A1O60721 1099 aa12.44□□□□□ -0.42
HMGB1-203ENST00000341423 ARID3CA6NKF2 412 aa12.44□□□□□ -0.42
HMGB1-203ENST00000341423 NPM2Q86SE8 214 aaKnown RBP12.43□□□□□ -0.42
HMGB1-203ENST00000341423 CHGAP10645 457 aaKnown RBP12.42□□□□□ -0.42
HMGB1-203ENST00000341423 OSCARQ8IYS5 282 aa12.42□□□□□ -0.42
HMGB1-203ENST00000341423 PPP1R15AO75807 674 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-203ENST00000341423 CYB5RLQ6IPT4 315 aa12.39□□□□□ -0.43
HMGB1-203ENST00000341423 ZNF777Q9ULD5 760 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-203ENST00000341423 KCNH8Q96L42 1107 aa12.37□□□□□ -0.43
HMGB1-203ENST00000341423 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.35□□□□□ -0.432e-7■■■□□ 14.6
HMGB1-203ENST00000341423 RB1CC1Q8TDY2 1594 aa12.34□□□□□ -0.43
HMGB1-203ENST00000341423 POLR3GLQ9BT43 218 aa12.32□□□□□ -0.44
HMGB1-203ENST00000341423 ITGAEP38570 1179 aa12.31□□□□□ -0.44
HMGB1-203ENST00000341423 MLECQ14165 292 aa12.27□□□□□ -0.45
HMGB1-203ENST00000341423 MEX3CQ5U5Q3 659 aaKnown RBP12.24□□□□□ -0.45
HMGB1-203ENST00000341423 PLEKHG5O94827 1062 aa12.24□□□□□ -0.45
HMGB1-203ENST00000341423 SCRIBQ14160 1630 aa12.23□□□□□ -0.45
HMGB1-203ENST00000341423 NEFMP07197 916 aa12.23□□□□□ -0.45
HMGB1-203ENST00000341423 TRIM52Q96A61 297 aa12.21□□□□□ -0.45
HMGB1-203ENST00000341423 CCDC9Q9Y3X0 531 aaKnown RBP12.17□□□□□ -0.46
HMGB1-203ENST00000341423 LMOD2Q6P5Q4 547 aa12.17□□□□□ -0.46
HMGB1-203ENST00000341423 P3H3Q8IVL6 736 aa12.17□□□□□ -0.46
HMGB1-203ENST00000341423 HDGFP51858 240 aaKnown RBP12.16□□□□□ -0.46
HMGB1-203ENST00000341423 ZBTB7CA1YPR0 619 aa12.15□□□□□ -0.46
HMGB1-203ENST00000341423 CECR2Q9BXF3 1484 aa12.15□□□□□ -0.46
HMGB1-203ENST00000341423 SF3B2Q13435 895 aaKnown RBP12.14□□□□□ -0.47
HMGB1-203ENST00000341423 NPHP1O15259 732 aa12.14□□□□□ -0.47
HMGB1-203ENST00000341423 PLEKHD1A6NEE1 506 aa12.13□□□□□ -0.47
HMGB1-203ENST00000341423 FAM50AQ14320 339 aaKnown RBP12.12□□□□□ -0.47
HMGB1-203ENST00000341423 TSPY4P0CV99 314 aa12.1□□□□□ -0.47
HMGB1-203ENST00000341423 TSPY10P0CW01 314 aa12.1□□□□□ -0.47
HMGB1-203ENST00000341423 PDS5BQ9NTI5 1447 aa12.09□□□□□ -0.47
HMGB1-203ENST00000341423 ZNF326Q5BKZ1 582 aaKnown RBP12.05□□□□□ -0.48
HMGB1-203ENST00000341423 FAM69CQ0P6D2 419 aa11.97□□□□□ -0.49
HMGB1-203ENST00000341423 EID1Q9Y6B2 187 aa11.94□□□□□ -0.5
HMGB1-203ENST00000341423 ARXQ96QS3 562 aa11.93□□□□□ -0.5
HMGB1-203ENST00000341423 TMX4Q9H1E5 349 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-203ENST00000341423 CNGB1Q14028 1251 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-203ENST00000341423 KLHL34Q8N239 644 aa11.92□□□□□ -0.5
HMGB1-203ENST00000341423 ZBTB47Q9UFB7 747 aaPredicted RBP11.89□□□□□ -0.51
HMGB1-203ENST00000341423 NACADO15069 1562 aa11.88□□□□□ -0.51
HMGB1-203ENST00000341423 DMRT2Q9Y5R5 561 aa11.87□□□□□ -0.51
HMGB1-203ENST00000341423 BAZ1BQ9UIG0 1483 aaKnown RBP11.87□□□□□ -0.51
HMGB1-203ENST00000341423 PPP1R1BQ9UD71 204 aaPredicted RBP11.82□□□□□ -0.52
HMGB1-203ENST00000341423 MSH5O43196 834 aa11.82□□□□□ -0.52
HMGB1-203ENST00000341423 PELP1Q8IZL8 1130 aaKnown RBP11.81□□□□□ -0.52
HMGB1-203ENST00000341423 PIP4K2BP78356 416 aa11.8□□□□□ -0.52
HMGB1-203ENST00000341423 PCGF6Q9BYE7 350 aa11.8□□□□□ -0.52
HMGB1-203ENST00000341423 CARMIL2Q6F5E8 1435 aa11.8□□□□□ -0.52
HMGB1-203ENST00000341423 GGT6Q6P531 493 aa11.79□□□□□ -0.52
HMGB1-203ENST00000341423 CSB-PGBD3P0DP91 1061 aa11.75□□□□□ -0.53
HMGB1-203ENST00000341423 EIF4G2P78344 907 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGB1-203ENST00000341423 POGKQ9P215 609 aa11.73□□□□□ -0.53
HMGB1-203ENST00000341423 CCER1Q8TC90 406 aaPredicted RBP11.71□□□□□ -0.53
HMGB1-203ENST00000341423 EFCAB2Q5VUJ9 269 aa11.7□□□□□ -0.54
HMGB1-203ENST00000341423 NUTM2BA6NNL0 878 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-203ENST00000341423 NUTM2EB1AL46 878 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-203ENST00000341423 NUTM2DQ5VT03 806 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-203ENST00000341423 NUTM2AQ8IVF1 878 aaPredicted RBP11.69□□□□□ -0.54
HMGB1-203ENST00000341423 KANK1Q14678 1352 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms