RNA–Protein interactions for RNA: ENST00000464611.1

ACTB-208, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 715 nt, Biotype processed transcript, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-208ENST00000464611 AEBP2Q6ZN18 517 aaPredicted RBP21.11■□□□□ 0.97
ACTB-208ENST00000464611 CHIC1Q5VXU3 224 aa19.72■□□□□ 0.75
ACTB-208ENST00000464611 NISCHQ9Y2I1 1504 aa18.38■□□□□ 0.53
ACTB-208ENST00000464611 SENP3Q9H4L4 574 aaPredicted RBP18.14■□□□□ 0.49
ACTB-208ENST00000464611 PHF23Q9BUL5 403 aaPredicted RBP17.77■□□□□ 0.44
ACTB-208ENST00000464611 POTEDQ86YR6 584 aa17.16■□□□□ 0.34
ACTB-208ENST00000464611 FOXD1Q16676 465 aa16.99■□□□□ 0.31
ACTB-208ENST00000464611 CCDC180Q9P1Z9 1646 aa16.35■□□□□ 0.21
ACTB-208ENST00000464611 MSH5O43196 834 aa16.21■□□□□ 0.19
ACTB-208ENST00000464611 PIAS4Q8N2W9 510 aaPredicted RBP15.71■□□□□ 0.11
ACTB-208ENST00000464611 ABCC9O60706 1549 aa15.61■□□□□ 0.09
ACTB-208ENST00000464611 ZCCHC6Q5VYS8 1495 aaKnown RBP15.4■□□□□ 0.06
ACTB-208ENST00000464611 DCAF1Q9Y4B6 1507 aa15.27■□□□□ 0.04
ACTB-208ENST00000464611 PPP6R1Q9UPN7 881 aa15.27■□□□□ 0.04
ACTB-208ENST00000464611 NACADO15069 1562 aa15.26■□□□□ 0.03
ACTB-208ENST00000464611 MYO15BQ96JP2 1530 aa15.26■□□□□ 0.03
ACTB-208ENST00000464611 RB1CC1Q8TDY2 1594 aa15.23■□□□□ 0.03
ACTB-208ENST00000464611 ADRA2BP18089 450 aa15.19■□□□□ 0.02
ACTB-208ENST00000464611 DCAF8L2P0C7V8 631 aa15.12■□□□□ 0.01
ACTB-208ENST00000464611 PLPPR3Q6T4P5 718 aa15.05■□□□□ -0
ACTB-208ENST00000464611 UNC13AQ9UPW8 1703 aa14.86□□□□□ -0.03
ACTB-208ENST00000464611 SCRIBQ14160 1630 aa14.85□□□□□ -0.03
ACTB-208ENST00000464611 SHROOM4Q9ULL8 1493 aa14.7□□□□□ -0.06
ACTB-208ENST00000464611 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
ACTB-208ENST00000464611 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.085e-26■□□□□ 10.8
ACTB-208ENST00000464611 SUPT5HO00267 1087 aaKnown RBP14.5□□□□□ -0.09
ACTB-208ENST00000464611 CACNB1Q02641 598 aaPredicted RBP14.4□□□□□ -0.1
ACTB-208ENST00000464611 EIF4G1Q04637 1599 aaKnown RBP14.32□□□□□ -0.12
ACTB-208ENST00000464611 BAZ1AQ9NRL2 1556 aaPredicted RBP14.28□□□□□ -0.12
ACTB-208ENST00000464611 DMRT2Q9Y5R5 561 aa14.26□□□□□ -0.13
ACTB-208ENST00000464611 SMARCA4P51532 1647 aa14.25□□□□□ -0.13
ACTB-208ENST00000464611 CECR2Q9BXF3 1484 aa14.21□□□□□ -0.13
ACTB-208ENST00000464611 MAPK8IP2Q13387 824 aaPredicted RBP14.18□□□□□ -0.14
ACTB-208ENST00000464611 CC2D2AQ9P2K1 1620 aa14.18□□□□□ -0.14
ACTB-208ENST00000464611 SMARCA2P51531 1590 aa14.13□□□□□ -0.15
ACTB-208ENST00000464611 MROH2BQ7Z745 1585 aa14.13□□□□□ -0.15
ACTB-208ENST00000464611 PEG3Q9GZU2 1588 aa14.12□□□□□ -0.15
ACTB-208ENST00000464611 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
ACTB-208ENST00000464611 HMGXB3Q12766 1538 aa14.05□□□□□ -0.16
ACTB-208ENST00000464611 RSF1Q96T23 1441 aaPredicted RBP14.04□□□□□ -0.16
ACTB-208ENST00000464611 WIZO95785 1651 aa14.01□□□□□ -0.17
ACTB-208ENST00000464611 NCAPD3P42695 1498 aa14.01□□□□□ -0.17
ACTB-208ENST00000464611 BAZ1BQ9UIG0 1483 aaKnown RBP13.99□□□□□ -0.17
ACTB-208ENST00000464611 DNAJC5BQ9UF47 199 aa13.94□□□□□ -0.18
ACTB-208ENST00000464611 TOP2AP11388 1531 aaKnown RBP13.94□□□□□ -0.18
ACTB-208ENST00000464611 SCAF1Q9H7N4 1312 aaKnown RBP13.89□□□□□ -0.19
ACTB-208ENST00000464611 DCAF8L1A6NGE4 600 aa13.75□□□□□ -0.21
ACTB-208ENST00000464611 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
ACTB-208ENST00000464611 TRIM41Q8WV44 630 aa13.71□□□□□ -0.21
ACTB-208ENST00000464611 CCDC88BA6NC98 1476 aa13.68□□□□□ -0.22
ACTB-208ENST00000464611 LAMC3Q9Y6N6 1575 aa13.68□□□□□ -0.22
ACTB-208ENST00000464611 HRCP23327 699 aa13.65□□□□□ -0.22
ACTB-208ENST00000464611 PRDM2Q13029 1718 aa13.64□□□□□ -0.23
ACTB-208ENST00000464611 CADPSQ9ULU8 1353 aa13.6□□□□□ -0.23
ACTB-208ENST00000464611 CFTRP13569 1480 aa13.6□□□□□ -0.23
ACTB-208ENST00000464611 LOC105371045A0A1W2PR82 267 aa13.58□□□□□ -0.24
ACTB-208ENST00000464611 TRIM26Q12899 539 aaPredicted RBP13.57□□□□□ -0.24
ACTB-208ENST00000464611 NESP48681 1621 aa13.56□□□□□ -0.24
ACTB-208ENST00000464611 PCGF6Q9BYE7 350 aa13.55□□□□□ -0.24
ACTB-208ENST00000464611 PDS5BQ9NTI5 1447 aa13.54□□□□□ -0.24
ACTB-208ENST00000464611 ERCC6Q03468 1493 aa13.5□□□□□ -0.25
ACTB-208ENST00000464611 C1QBPQ07021 282 aaKnown RBP13.5□□□□□ -0.25
ACTB-208ENST00000464611 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
ACTB-208ENST00000464611 FANCD2Q9BXW9 1451 aa13.48□□□□□ -0.25
ACTB-208ENST00000464611 CEP164Q9UPV0 1460 aa13.48□□□□□ -0.25
ACTB-208ENST00000464611 ZEB1P37275 1124 aaPredicted RBP13.44□□□□□ -0.26
ACTB-208ENST00000464611 THOC2Q8NI27 1593 aaKnown RBP13.41□□□□□ -0.26
ACTB-208ENST00000464611 EEA1Q15075 1411 aa13.41□□□□□ -0.26
ACTB-208ENST00000464611 HOXD11P31277 338 aaPredicted RBP13.41□□□□□ -0.26
ACTB-208ENST00000464611 MRC2Q9UBG0 1479 aa13.4□□□□□ -0.26
ACTB-208ENST00000464611 WDR62O43379 1518 aa13.37□□□□□ -0.27
ACTB-208ENST00000464611 ABCC8Q09428 1581 aa13.35□□□□□ -0.27
ACTB-208ENST00000464611 DNMBPQ6XZF7 1577 aa13.34□□□□□ -0.27
ACTB-208ENST00000464611 FAM9AQ8IZU1 332 aaPredicted RBP13.31□□□□□ -0.28
ACTB-208ENST00000464611 URB2Q14146 1524 aaKnown RBP13.3□□□□□ -0.28
ACTB-208ENST00000464611 POTEHQ6S545 545 aa13.3□□□□□ -0.28
ACTB-208ENST00000464611 CUX2O14529 1486 aa13.29□□□□□ -0.28
ACTB-208ENST00000464611 WRNQ14191 1432 aaPredicted RBP eCLIP13.29□□□□□ -0.28
ACTB-208ENST00000464611 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
ACTB-208ENST00000464611 BIVM-ERCC5R4GMW8 1640 aa13.28□□□□□ -0.28
ACTB-208ENST00000464611 CUX1P39880 1505 aa13.26□□□□□ -0.29
ACTB-208ENST00000464611 TOP2BQ02880 1626 aa13.26□□□□□ -0.29
ACTB-208ENST00000464611 SYNJ1O43426 1573 aa13.24□□□□□ -0.29
ACTB-208ENST00000464611 TNIKQ9UKE5 1360 aa13.23□□□□□ -0.29
ACTB-208ENST00000464611 CSRNP3Q8WYN3 585 aa13.21□□□□□ -0.29
ACTB-208ENST00000464611 FGD5Q6ZNL6 1462 aa13.2□□□□□ -0.3
ACTB-208ENST00000464611 POLA1P09884 1462 aaPredicted RBP13.19□□□□□ -0.3
ACTB-208ENST00000464611 IFT140Q96RY7 1462 aa13.17□□□□□ -0.3
ACTB-208ENST00000464611 WDR97A6NE52 1622 aa13.16□□□□□ -0.3
ACTB-208ENST00000464611 GOLGA3Q08378 1498 aa13.14□□□□□ -0.31
ACTB-208ENST00000464611 TARBP1Q13395 1621 aaKnown RBP13.13□□□□□ -0.31
ACTB-208ENST00000464611 RNF216Q9NWF9 866 aaPredicted RBP13.1□□□□□ -0.31
ACTB-208ENST00000464611 SOGA1O94964 1423 aa13.1□□□□□ -0.31
ACTB-208ENST00000464611 ABCA10Q8WWZ4 1543 aa13.09□□□□□ -0.31
ACTB-208ENST00000464611 CEP162Q5TB80 1403 aa13.09□□□□□ -0.31
ACTB-208ENST00000464611 PPP4R3CPQ6ZMV5 832 aa13.09□□□□□ -0.31
ACTB-208ENST00000464611 EIF4G3O43432 1585 aaKnown RBP13.08□□□□□ -0.32
ACTB-208ENST00000464611 KIF21BO75037 1637 aa13.08□□□□□ -0.32
ACTB-208ENST00000464611 RAD54L2Q9Y4B4 1467 aa13.07□□□□□ -0.32
ACTB-208ENST00000464611 ABCA5Q8WWZ7 1642 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms