RNA–Protein interactions for RNA: ENST00000568559.1

TMEM170A-205, Transcript of transmembrane protein 170A, humanhuman

TSL 1 (best)

Gene TMEM170A, Length 4,345 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM170A-205ENST00000568559 NISCHQ9Y2I1 1504 aa25.2■■□□□ 1.63
TMEM170A-205ENST00000568559 DCAF8L2P0C7V8 631 aa22.71■■□□□ 1.23
TMEM170A-205ENST00000568559 SHROOM4Q9ULL8 1493 aa21.81■■□□□ 1.08
TMEM170A-205ENST00000568559 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
TMEM170A-205ENST00000568559 ABCC9O60706 1549 aa21.36■■□□□ 1.01
TMEM170A-205ENST00000568559 SUPT5HO00267 1087 aaKnown RBP21.33■■□□□ 1.01
TMEM170A-205ENST00000568559 ZCCHC6Q5VYS8 1495 aaKnown RBP21.02■□□□□ 0.95
TMEM170A-205ENST00000568559 PABPN1Q86U42 306 aaKnown RBP eCLIP20.56■□□□□ 0.88
TMEM170A-205ENST00000568559 SCRIBQ14160 1630 aa20.47■□□□□ 0.87
TMEM170A-205ENST00000568559 EHMT2Q96KQ7 1210 aa20.43■□□□□ 0.86
TMEM170A-205ENST00000568559 DCAF1Q9Y4B6 1507 aa20.43■□□□□ 0.86
TMEM170A-205ENST00000568559 NACADO15069 1562 aa20.39■□□□□ 0.85
TMEM170A-205ENST00000568559 RB1CC1Q8TDY2 1594 aa20.37■□□□□ 0.85
TMEM170A-205ENST00000568559 MYO15BQ96JP2 1530 aa20.1■□□□□ 0.81
TMEM170A-205ENST00000568559 TRIM41Q8WV44 630 aa19.91■□□□□ 0.78
TMEM170A-205ENST00000568559 FAM9AQ8IZU1 332 aaPredicted RBP19.88■□□□□ 0.77
TMEM170A-205ENST00000568559 CHIC1Q5VXU3 224 aa19.77■□□□□ 0.76
TMEM170A-205ENST00000568559 RSF1Q96T23 1441 aaPredicted RBP19.76■□□□□ 0.75
TMEM170A-205ENST00000568559 CECR2Q9BXF3 1484 aa19.75■□□□□ 0.75
TMEM170A-205ENST00000568559 BAZ1AQ9NRL2 1556 aaPredicted RBP19.57■□□□□ 0.72
TMEM170A-205ENST00000568559 MROH2BQ7Z745 1585 aa19.53■□□□□ 0.72
TMEM170A-205ENST00000568559 TTBK1Q5TCY1 1321 aaPredicted RBP19.52■□□□□ 0.72
TMEM170A-205ENST00000568559 RANGAP1P46060 587 aaPredicted RBP19.43■□□□□ 0.7
TMEM170A-205ENST00000568559 BAZ1BQ9UIG0 1483 aaKnown RBP19.36■□□□□ 0.69
TMEM170A-205ENST00000568559 LOC105371045A0A1W2PR82 267 aa19.33■□□□□ 0.69
TMEM170A-205ENST00000568559 UBTFP17480 764 aaKnown RBP19.32■□□□□ 0.68
TMEM170A-205ENST00000568559 WIZO95785 1651 aa19.29■□□□□ 0.68
TMEM170A-205ENST00000568559 SMARCA4P51532 1647 aa19.25■□□□□ 0.67
TMEM170A-205ENST00000568559 BICRAQ9NZM4 1560 aa19.21■□□□□ 0.67
TMEM170A-205ENST00000568559 SMARCA2P51531 1590 aa19.18■□□□□ 0.66
TMEM170A-205ENST00000568559 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
TMEM170A-205ENST00000568559 CCDC88BA6NC98 1476 aa19.12■□□□□ 0.65
TMEM170A-205ENST00000568559 UNC13AQ9UPW8 1703 aa19.12■□□□□ 0.65
TMEM170A-205ENST00000568559 TOP2AP11388 1531 aaKnown RBP19.1■□□□□ 0.65
TMEM170A-205ENST00000568559 APLP2Q06481 763 aa19.09■□□□□ 0.65
TMEM170A-205ENST00000568559 EIF4G1Q04637 1599 aaKnown RBP19.03■□□□□ 0.64
TMEM170A-205ENST00000568559 PPARGC1BQ86YN6 1023 aaKnown RBP18.99■□□□□ 0.63
TMEM170A-205ENST00000568559 CSRNP3Q8WYN3 585 aa18.95■□□□□ 0.62
TMEM170A-205ENST00000568559 WRNQ14191 1432 aaPredicted RBP eCLIP18.92■□□□□ 0.62
TMEM170A-205ENST00000568559 ATP1B4Q9UN42 357 aaPredicted RBP18.91■□□□□ 0.62
TMEM170A-205ENST00000568559 PCGF6Q9BYE7 350 aa18.89■□□□□ 0.61
TMEM170A-205ENST00000568559 NCAPD3P42695 1498 aa18.89■□□□□ 0.61
TMEM170A-205ENST00000568559 ABCC8Q09428 1581 aa18.8■□□□□ 0.6
TMEM170A-205ENST00000568559 CADPSQ9ULU8 1353 aa18.77■□□□□ 0.6
TMEM170A-205ENST00000568559 CC2D2AQ9P2K1 1620 aa18.77■□□□□ 0.59
TMEM170A-205ENST00000568559 FBLN2P98095 1184 aa18.68■□□□□ 0.58
TMEM170A-205ENST00000568559 HMGXB3Q12766 1538 aa18.66■□□□□ 0.58
TMEM170A-205ENST00000568559 SOGA1O94964 1423 aa18.63■□□□□ 0.57
TMEM170A-205ENST00000568559 PDS5BQ9NTI5 1447 aa18.62■□□□□ 0.57
TMEM170A-205ENST00000568559 ERCC6Q03468 1493 aa18.62■□□□□ 0.57
TMEM170A-205ENST00000568559 PEG3Q9GZU2 1588 aa18.61■□□□□ 0.57
TMEM170A-205ENST00000568559 DNAJC5BQ9UF47 199 aa18.61■□□□□ 0.57
TMEM170A-205ENST00000568559 EEA1Q15075 1411 aa18.6■□□□□ 0.57
TMEM170A-205ENST00000568559 KIF27Q86VH2 1401 aa18.56■□□□□ 0.56
TMEM170A-205ENST00000568559 TRIM26Q12899 539 aaPredicted RBP18.56■□□□□ 0.56
TMEM170A-205ENST00000568559 P3H3Q8IVL6 736 aa18.54■□□□□ 0.56
TMEM170A-205ENST00000568559 FANCD2Q9BXW9 1451 aa18.53■□□□□ 0.56
TMEM170A-205ENST00000568559 CFTRP13569 1480 aa18.5■□□□□ 0.55
TMEM170A-205ENST00000568559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.5■□□□□ 0.55
TMEM170A-205ENST00000568559 HNRNPUL2Q1KMD3 747 aaKnown RBP18.5■□□□□ 0.55
TMEM170A-205ENST00000568559 CUX2O14529 1486 aa18.48■□□□□ 0.55
TMEM170A-205ENST00000568559 CEP164Q9UPV0 1460 aa18.47■□□□□ 0.55
TMEM170A-205ENST00000568559 NESP48681 1621 aa18.47■□□□□ 0.55
TMEM170A-205ENST00000568559 GOLGA3Q08378 1498 aa18.44■□□□□ 0.54
TMEM170A-205ENST00000568559 RUSC2Q8N2Y8 1516 aa18.38■□□□□ 0.53
TMEM170A-205ENST00000568559 CHMP7Q8WUX9 453 aaPredicted RBP18.38■□□□□ 0.53
TMEM170A-205ENST00000568559 TDRD9Q8NDG6 1382 aaKnown RBP18.38■□□□□ 0.53
TMEM170A-205ENST00000568559 TNIKQ9UKE5 1360 aa18.35■□□□□ 0.53
TMEM170A-205ENST00000568559 CLIP1P30622 1438 aa18.34■□□□□ 0.53
TMEM170A-205ENST00000568559 CEP162Q5TB80 1403 aa18.34■□□□□ 0.53
TMEM170A-205ENST00000568559 CARMIL1Q5VZK9 1371 aa18.34■□□□□ 0.53
TMEM170A-205ENST00000568559 ITGAEP38570 1179 aa18.34■□□□□ 0.53
TMEM170A-205ENST00000568559 CCER1Q8TC90 406 aaPredicted RBP18.32■□□□□ 0.52
TMEM170A-205ENST00000568559 SYNJ1O43426 1573 aa18.3■□□□□ 0.52
TMEM170A-205ENST00000568559 FGD5Q6ZNL6 1462 aa18.29■□□□□ 0.52
TMEM170A-205ENST00000568559 ARID3CA6NKF2 412 aa18.29■□□□□ 0.52
TMEM170A-205ENST00000568559 RAD54L2Q9Y4B4 1467 aa18.24■□□□□ 0.51
TMEM170A-205ENST00000568559 CUX1P39880 1505 aa18.22■□□□□ 0.51
TMEM170A-205ENST00000568559 LAMC3Q9Y6N6 1575 aa18.18■□□□□ 0.5
TMEM170A-205ENST00000568559 RAPGEF2Q9Y4G8 1499 aa18.17■□□□□ 0.5
TMEM170A-205ENST00000568559 TOP2BQ02880 1626 aa18.17■□□□□ 0.5
TMEM170A-205ENST00000568559 FAM50AQ14320 339 aaKnown RBP18.16■□□□□ 0.5
TMEM170A-205ENST00000568559 TOPBP1Q92547 1522 aa18.15■□□□□ 0.5
TMEM170A-205ENST00000568559 IGF1RP08069 1367 aa18.14■□□□□ 0.49
TMEM170A-205ENST00000568559 MRC2Q9UBG0 1479 aa18.1■□□□□ 0.49
TMEM170A-205ENST00000568559 ZEB1P37275 1124 aaPredicted RBP18.09■□□□□ 0.49
TMEM170A-205ENST00000568559 POLA1P09884 1462 aaPredicted RBP18.08■□□□□ 0.49
TMEM170A-205ENST00000568559 GAPVD1Q14C86 1478 aa18.07■□□□□ 0.48
TMEM170A-205ENST00000568559 DNMBPQ6XZF7 1577 aa18.06■□□□□ 0.48
TMEM170A-205ENST00000568559 AQRO60306 1485 aaKnown RBP eCLIP18.05■□□□□ 0.48
TMEM170A-205ENST00000568559 CDK11AQ9UQ88 783 aaPredicted RBP18.02■□□□□ 0.48
TMEM170A-205ENST00000568559 URB2Q14146 1524 aaKnown RBP17.99■□□□□ 0.47
TMEM170A-205ENST00000568559 HRCP23327 699 aa17.97■□□□□ 0.47
TMEM170A-205ENST00000568559 MYT1LQ9UL68 1186 aa17.97■□□□□ 0.47
TMEM170A-205ENST00000568559 CNGB1Q14028 1251 aaPredicted RBP17.96■□□□□ 0.47
TMEM170A-205ENST00000568559 MTUS2Q5JR59 1369 aa17.94■□□□□ 0.46
TMEM170A-205ENST00000568559 VPS8Q8N3P4 1428 aa17.94■□□□□ 0.46
TMEM170A-205ENST00000568559 BIVM-ERCC5R4GMW8 1640 aa17.91■□□□□ 0.46
TMEM170A-205ENST00000568559 IFT140Q96RY7 1462 aa17.91■□□□□ 0.46
TMEM170A-205ENST00000568559 PRXQ9BXM0 1461 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms