Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 SLC3A2-205ENST00000457660 873 ntTSL 512.61□□□□□ -0.393e-11■■■□□ 16.1
DDX42Q86XP3 AC004674.1-201ENST00000458400 739 ntBASIC11.91□□□□□ -0.53e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.513e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-217ENST00000541425 595 ntTSL 511.49□□□□□ -0.573e-11■■■□□ 16.1
DDX42Q86XP3 SLC3A2-215ENST00000539891 1300 ntTSL 1 (best)11.42□□□□□ -0.583e-11■■■□□ 16.1
DDX42Q86XP3 SLC3A2-210ENST00000537839 584 ntTSL 511□□□□□ -0.653e-11■■■□□ 16.1
DDX42Q86XP3 SEC31A-227ENST00000508502 3801 ntAPPRIS ALT1 TSL 1 (best) BASIC10.63□□□□□ -0.713e-6■■■□□ 16.1
DDX42Q86XP3 PHGDH-215ENST00000641371 725 nt10.08□□□□□ -0.83e-6■■■□□ 16.1
DDX42Q86XP3 SLC3A2-209ENST00000537508 583 ntTSL 210.01□□□□□ -0.813e-11■■■□□ 16.1
DDX42Q86XP3 SLC3A2-223ENST00000546312 564 ntTSL 29.69□□□□□ -0.863e-11■■■□□ 16.1
DDX42Q86XP3 ETV3-202ENST00000368192 5254 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.93e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-213ENST00000503937 1564 ntTSL 1 (best)8.36□□□□□ -1.073e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.25□□□□□ -1.253e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6□□□□□ -1.453e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-232ENST00000511338 657 ntTSL 55.91□□□□□ -1.463e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.6□□□□□ -1.513e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.56□□□□□ -1.523e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.51□□□□□ -1.533e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.8□□□□□ -1.643e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.653e-6■■■□□ 16.1
DDX42Q86XP3 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.21□□□□□ -1.743e-6■■■□□ 16.1
DDX42Q86XP3 FDFT1-203ENST00000446331 1558 ntTSL 224.66■■□□□ 1.543e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.33e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.92■■□□□ 1.13e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.97■□□□□ 0.953e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.88■□□□□ 0.933e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-207ENST00000525607 1773 ntTSL 219.57■□□□□ 0.723e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-217ENST00000530337 741 ntTSL 318.85■□□□□ 0.613e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.323e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.07■□□□□ 0.163e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-215ENST00000529464 932 ntTSL 1 (best)15.09■□□□□ 0.013e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.033e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.41□□□□□ -0.13e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-204ENST00000525283 898 ntTSL 313.47□□□□□ -0.253e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC12.99□□□□□ -0.333e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-225ENST00000622850 1987 ntTSL 2 BASIC11.3□□□□□ -0.63e-22■■■□□ 15.8
DDX42Q86XP3 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC7.4□□□□□ -1.233e-22■■■□□ 15.8
DDX42Q86XP3 FAM178B-205ENST00000494172 592 ntTSL 318.94■□□□□ 0.624e-10■■■□□ 15.7
DDX42Q86XP3 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.54e-10■■■□□ 15.7
DDX42Q86XP3 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.234e-10■■■□□ 15.7
DDX42Q86XP3 FAM178B-202ENST00000470789 722 ntTSL 1 (best)11.9□□□□□ -0.54e-10■■■□□ 15.7
DDX42Q86XP3 H2AFZ-202ENST00000511203 1880 ntTSL 230.95■■■□□ 2.553e-6■■■□□ 15.7
DDX42Q86XP3 H2AFZ-203ENST00000511319 1254 ntTSL 1 (best)30.75■■■□□ 2.513e-6■■■□□ 15.7
DDX42Q86XP3 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.423e-6■■■□□ 15.7
DDX42Q86XP3 H2AFZ-204ENST00000511348 1843 ntTSL 1 (best)14.34□□□□□ -0.113e-6■■■□□ 15.7
DDX42Q86XP3 H2AFZ-205ENST00000527366 435 ntTSL 313.2□□□□□ -0.33e-6■■■□□ 15.7
DDX42Q86XP3 H2AFZ-206ENST00000529158 726 ntTSL 310.64□□□□□ -0.713e-6■■■□□ 15.7
DDX42Q86XP3 SCART1-201ENST00000462252 3451 ntTSL 218.12■□□□□ 0.498e-8■■■□□ 15.6
DDX42Q86XP3 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.667e-6■■■□□ 15.5
DDX42Q86XP3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.78■□□□□ 0.67e-6■■■□□ 15.5
DDX42Q86XP3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.88■□□□□ 0.457e-6■■■□□ 15.5
DDX42Q86XP3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.27■□□□□ 0.362e-7■■■□□ 15.5
DDX42Q86XP3 WARS-243ENST00000557722 848 ntTSL 517.06■□□□□ 0.322e-7■■■□□ 15.5
DDX42Q86XP3 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.43■□□□□ 0.062e-7■■■□□ 15.5
DDX42Q86XP3 WARS-229ENST00000556435 528 ntTSL 213.91□□□□□ -0.182e-7■■■□□ 15.5
DDX42Q86XP3 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.342e-7■■■□□ 15.5
DDX42Q86XP3 SYVN1-204ENST00000449943 4547 ntTSL 212.39□□□□□ -0.437e-6■■■□□ 15.5
DDX42Q86XP3 SYVN1-206ENST00000526060 3144 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.447e-6■■■□□ 15.5
DDX42Q86XP3 WARS-230ENST00000556504 847 ntTSL 510.88□□□□□ -0.672e-7■■■□□ 15.5
DDX42Q86XP3 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.742e-7■■■□□ 15.5
DDX42Q86XP3 WARS-201ENST00000344102 2690 ntTSL 5 BASIC10.45□□□□□ -0.742e-7■■■□□ 15.5
DDX42Q86XP3 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.92e-7■■■□□ 15.5
DDX42Q86XP3 WARS-240ENST00000557297 821 ntTSL 37.75□□□□□ -1.172e-7■■■□□ 15.5
DDX42Q86XP3 WARS-205ENST00000553395 801 ntTSL 56.91□□□□□ -1.32e-7■■■□□ 15.5
DDX42Q86XP3 WARS-213ENST00000554084 866 ntTSL 56.76□□□□□ -1.332e-7■■■□□ 15.5
DDX42Q86XP3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.46■■□□□ 1.671e-7■■■□□ 15.4
DDX42Q86XP3 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.121e-7■■■□□ 15.4
DDX42Q86XP3 RILPL1-201ENST00000340724 2389 ntTSL 515.36■□□□□ 0.051e-7■■■□□ 15.4
DDX42Q86XP3 DDIT4-202ENST00000471240 521 ntTSL 222.64■■□□□ 1.212e-16■■■□□ 15.3
DDX42Q86XP3 DDIT4-203ENST00000473155 753 ntTSL 1 (best)22.02■■□□□ 1.122e-16■■■□□ 15.3
DDX42Q86XP3 MIR4751-201ENST00000578027 74 ntBASIC18.01■□□□□ 0.473e-8■■■□□ 15.3
DDX42Q86XP3 PPP1R12A-208ENST00000547330 2275 ntTSL 1 (best)15.4■□□□□ 0.063e-8■■■□□ 15.3
DDX42Q86XP3 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.09■□□□□ 0.013e-8■■■□□ 15.3
DDX42Q86XP3 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.97□□□□□ -0.013e-8■■■□□ 15.3
DDX42Q86XP3 BSDC1-201ENST00000341071 4599 ntTSL 2 BASIC13.78□□□□□ -0.23e-8■■■□□ 15.3
DDX42Q86XP3 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.263e-8■■■□□ 15.3
DDX42Q86XP3 BSDC1-209ENST00000526031 1361 ntTSL 2 BASIC13.17□□□□□ -0.33e-8■■■□□ 15.3
DDX42Q86XP3 BSDC1-206ENST00000455895 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.323e-8■■■□□ 15.3
DDX42Q86XP3 PPP1R12A-202ENST00000437004 4639 ntTSL 1 (best) BASIC12.1□□□□□ -0.473e-8■■■□□ 15.3
DDX42Q86XP3 PPP1R12A-203ENST00000450142 5721 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.483e-8■■■□□ 15.3
DDX42Q86XP3 BSDC1-204ENST00000444377 2925 ntTSL 1 (best)11.45□□□□□ -0.583e-8■■■□□ 15.3
DDX42Q86XP3 PPP1R12A-213ENST00000550107 2925 ntTSL 1 (best) BASIC10.52□□□□□ -0.733e-8■■■□□ 15.3
DDX42Q86XP3 PPP1R12A-216ENST00000550510 631 ntTSL 55.1□□□□□ -1.593e-8■■■□□ 15.3
DDX42Q86XP3 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.816e-11■■■□□ 15.2
DDX42Q86XP3 OAZ1-210ENST00000593012 1357 ntTSL 219.18■□□□□ 0.666e-11■■■□□ 15.2
DDX42Q86XP3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.66e-11■■■□□ 15.2
DDX42Q86XP3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.466e-11■■■□□ 15.2
DDX42Q86XP3 OAZ1-201ENST00000581150 1131 ntTSL 517.52■□□□□ 0.46e-11■■■□□ 15.2
DDX42Q86XP3 OAZ1-209ENST00000592787 857 ntTSL 217.2■□□□□ 0.346e-11■■■□□ 15.2
DDX42Q86XP3 OAZ1-207ENST00000590943 1012 ntTSL 216.88■□□□□ 0.296e-11■■■□□ 15.2
DDX42Q86XP3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.467e-9■■■□□ 15.2
DDX42Q86XP3 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.27e-9■■■□□ 15.2
DDX42Q86XP3 BRD2-213ENST00000495733 3404 ntTSL 216.33■□□□□ 0.27e-9■■■□□ 15.2
DDX42Q86XP3 BRD2-206ENST00000456339 887 ntTSL 415.98■□□□□ 0.157e-9■■■□□ 15.2
DDX42Q86XP3 BRD2-212ENST00000482914 4834 ntTSL 1 (best)15.12■□□□□ 0.017e-9■■■□□ 15.2
DDX42Q86XP3 BRD2-219ENST00000607833 2338 ntAPPRIS ALT2 TSL 1 (best)14.39□□□□□ -0.117e-9■■■□□ 15.2
DDX42Q86XP3 BRD2-203ENST00000395287 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.727e-9■■■□□ 15.2
DDX42Q86XP3 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.382e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.341e-6■■■□□ 15.2
DDX42Q86XP3 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.141e-6■■■□□ 15.2
Retrieved 100 of 2,477 protein–RNA pairs in 38.5 ms