RNA–Protein interactions for RNA: ENST00000641371.1

PHGDH-215, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 725 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-215ENST00000641371 NISCHQ9Y2I1 1504 aa21.93■■□□□ 1.1
PHGDH-215ENST00000641371 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
PHGDH-215ENST00000641371 ZCCHC6Q5VYS8 1495 aaKnown RBP18.45■□□□□ 0.54
PHGDH-215ENST00000641371 DCAF1Q9Y4B6 1507 aa18.28■□□□□ 0.52
PHGDH-215ENST00000641371 MYO15BQ96JP2 1530 aa18.1■□□□□ 0.49
PHGDH-215ENST00000641371 ABCC9O60706 1549 aa17.91■□□□□ 0.46
PHGDH-215ENST00000641371 NACADO15069 1562 aa17.9■□□□□ 0.46
PHGDH-215ENST00000641371 DCAF8L2P0C7V8 631 aa17.89■□□□□ 0.45
PHGDH-215ENST00000641371 RB1CC1Q8TDY2 1594 aa17.71■□□□□ 0.43
PHGDH-215ENST00000641371 SHROOM4Q9ULL8 1493 aa17.65■□□□□ 0.42
PHGDH-215ENST00000641371 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
PHGDH-215ENST00000641371 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
PHGDH-215ENST00000641371 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
PHGDH-215ENST00000641371 BICRAQ9NZM4 1560 aa17.04■□□□□ 0.32
PHGDH-215ENST00000641371 BAZ1AQ9NRL2 1556 aaPredicted RBP17■□□□□ 0.31
PHGDH-215ENST00000641371 RSF1Q96T23 1441 aaPredicted RBP16.96■□□□□ 0.31
PHGDH-215ENST00000641371 CECR2Q9BXF3 1484 aa16.89■□□□□ 0.29
PHGDH-215ENST00000641371 SMARCA4P51532 1647 aa16.86■□□□□ 0.29
PHGDH-215ENST00000641371 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
PHGDH-215ENST00000641371 PABPN1Q86U42 306 aaKnown RBP eCLIP16.81■□□□□ 0.28
PHGDH-215ENST00000641371 PEG3Q9GZU2 1588 aa16.73■□□□□ 0.27
PHGDH-215ENST00000641371 WIZO95785 1651 aa16.72■□□□□ 0.27
PHGDH-215ENST00000641371 TOP2AP11388 1531 aaKnown RBP16.66■□□□□ 0.26
PHGDH-215ENST00000641371 SMARCA2P51531 1590 aa16.65■□□□□ 0.26
PHGDH-215ENST00000641371 EIF4G1Q04637 1599 aaKnown RBP16.57■□□□□ 0.24
PHGDH-215ENST00000641371 ATAD2BQ9ULI0 1458 aa16.55■□□□□ 0.24
PHGDH-215ENST00000641371 DNAJC5BQ9UF47 199 aa16.55■□□□□ 0.24
PHGDH-215ENST00000641371 HMGXB3Q12766 1538 aa16.49■□□□□ 0.23
PHGDH-215ENST00000641371 BAZ1BQ9UIG0 1483 aaKnown RBP16.48■□□□□ 0.23
PHGDH-215ENST00000641371 NCAPD3P42695 1498 aa16.46■□□□□ 0.23
PHGDH-215ENST00000641371 CHIC1Q5VXU3 224 aa16.41■□□□□ 0.22
PHGDH-215ENST00000641371 CCDC88BA6NC98 1476 aa16.4■□□□□ 0.22
PHGDH-215ENST00000641371 CC2D2AQ9P2K1 1620 aa16.29■□□□□ 0.2
PHGDH-215ENST00000641371 TRIM41Q8WV44 630 aa16.15■□□□□ 0.18
PHGDH-215ENST00000641371 PRDM2Q13029 1718 aa16.11■□□□□ 0.17
PHGDH-215ENST00000641371 CFTRP13569 1480 aa16.08■□□□□ 0.16
PHGDH-215ENST00000641371 WRNQ14191 1432 aaPredicted RBP eCLIP16.02■□□□□ 0.15
PHGDH-215ENST00000641371 CADPSQ9ULU8 1353 aa16■□□□□ 0.15
PHGDH-215ENST00000641371 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
PHGDH-215ENST00000641371 EEA1Q15075 1411 aa15.96■□□□□ 0.15
PHGDH-215ENST00000641371 LAMC3Q9Y6N6 1575 aa15.94■□□□□ 0.14
PHGDH-215ENST00000641371 TOP2BQ02880 1626 aa15.92■□□□□ 0.14
PHGDH-215ENST00000641371 BIVM-ERCC5R4GMW8 1640 aa15.92■□□□□ 0.14
PHGDH-215ENST00000641371 SYNJ1O43426 1573 aa15.88■□□□□ 0.13
PHGDH-215ENST00000641371 FANCD2Q9BXW9 1451 aa15.81■□□□□ 0.12
PHGDH-215ENST00000641371 PDS5BQ9NTI5 1447 aa15.8■□□□□ 0.12
PHGDH-215ENST00000641371 CUX1P39880 1505 aa15.78■□□□□ 0.12
PHGDH-215ENST00000641371 CEP164Q9UPV0 1460 aa15.75■□□□□ 0.11
PHGDH-215ENST00000641371 DNMBPQ6XZF7 1577 aa15.73■□□□□ 0.11
PHGDH-215ENST00000641371 SOGA1O94964 1423 aa15.69■□□□□ 0.1
PHGDH-215ENST00000641371 NESP48681 1621 aa15.69■□□□□ 0.1
PHGDH-215ENST00000641371 FAM9AQ8IZU1 332 aaPredicted RBP15.69■□□□□ 0.1
PHGDH-215ENST00000641371 CSRNP3Q8WYN3 585 aa15.69■□□□□ 0.1
PHGDH-215ENST00000641371 KIF21BO75037 1637 aa15.66■□□□□ 0.1
PHGDH-215ENST00000641371 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
PHGDH-215ENST00000641371 LOC105371045A0A1W2PR82 267 aa15.65■□□□□ 0.1
PHGDH-215ENST00000641371 TOPBP1Q92547 1522 aa15.64■□□□□ 0.09
PHGDH-215ENST00000641371 GOLGA3Q08378 1498 aa15.64■□□□□ 0.09
PHGDH-215ENST00000641371 FGD5Q6ZNL6 1462 aa15.62■□□□□ 0.09
PHGDH-215ENST00000641371 KIF21AQ7Z4S6 1674 aa15.6■□□□□ 0.09
PHGDH-215ENST00000641371 ERICH3Q5RHP9 1530 aa15.58■□□□□ 0.09
PHGDH-215ENST00000641371 RUSC2Q8N2Y8 1516 aa15.58■□□□□ 0.09
PHGDH-215ENST00000641371 TNIKQ9UKE5 1360 aa15.58■□□□□ 0.08
PHGDH-215ENST00000641371 MRC2Q9UBG0 1479 aa15.56■□□□□ 0.08
PHGDH-215ENST00000641371 URB2Q14146 1524 aaKnown RBP15.56■□□□□ 0.08
PHGDH-215ENST00000641371 ABCA10Q8WWZ4 1543 aa15.56■□□□□ 0.08
PHGDH-215ENST00000641371 POLA1P09884 1462 aaPredicted RBP15.55■□□□□ 0.08
PHGDH-215ENST00000641371 CUX2O14529 1486 aa15.52■□□□□ 0.08
PHGDH-215ENST00000641371 PRXQ9BXM0 1461 aa15.52■□□□□ 0.07
PHGDH-215ENST00000641371 WDR97A6NE52 1622 aa15.5■□□□□ 0.07
PHGDH-215ENST00000641371 WDR62O43379 1518 aa15.48■□□□□ 0.07
PHGDH-215ENST00000641371 DNAJC5Q9H3Z4 198 aa15.46■□□□□ 0.07
PHGDH-215ENST00000641371 ERCC6Q03468 1493 aa15.46■□□□□ 0.06
PHGDH-215ENST00000641371 CUL7Q14999 1698 aa15.45■□□□□ 0.06
PHGDH-215ENST00000641371 UBTFP17480 764 aaKnown RBP15.45■□□□□ 0.06
PHGDH-215ENST00000641371 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
PHGDH-215ENST00000641371 RAPGEF2Q9Y4G8 1499 aa15.42■□□□□ 0.06
PHGDH-215ENST00000641371 IGF1RP08069 1367 aa15.42■□□□□ 0.06
PHGDH-215ENST00000641371 ABCA5Q8WWZ7 1642 aa15.42■□□□□ 0.06
PHGDH-215ENST00000641371 TARBP1Q13395 1621 aaKnown RBP15.41■□□□□ 0.06
PHGDH-215ENST00000641371 IFT140Q96RY7 1462 aa15.4■□□□□ 0.06
PHGDH-215ENST00000641371 RAD54L2Q9Y4B4 1467 aa15.4■□□□□ 0.06
PHGDH-215ENST00000641371 CARMIL1Q5VZK9 1371 aa15.38■□□□□ 0.05
PHGDH-215ENST00000641371 THOC2Q8NI27 1593 aaKnown RBP15.38■□□□□ 0.05
PHGDH-215ENST00000641371 GAPVD1Q14C86 1478 aa15.37■□□□□ 0.05
PHGDH-215ENST00000641371 EHMT2Q96KQ7 1210 aa15.34■□□□□ 0.05
PHGDH-215ENST00000641371 CLIP1P30622 1438 aa15.33■□□□□ 0.04
PHGDH-215ENST00000641371 PBRM1Q86U86 1689 aa15.29■□□□□ 0.04
PHGDH-215ENST00000641371 GRIN2BQ13224 1484 aa15.27■□□□□ 0.04
PHGDH-215ENST00000641371 TDRD9Q8NDG6 1382 aaKnown RBP15.25■□□□□ 0.03
PHGDH-215ENST00000641371 CTTNBP2Q8WZ74 1663 aa15.24■□□□□ 0.03
PHGDH-215ENST00000641371 FHAD1B1AJZ9 1412 aa15.24■□□□□ 0.03
PHGDH-215ENST00000641371 VPS8Q8N3P4 1428 aa15.23■□□□□ 0.03
PHGDH-215ENST00000641371 ADAMTS12P58397 1594 aa15.21■□□□□ 0.03
PHGDH-215ENST00000641371 EFCAB5A4FU69 1503 aa15.2■□□□□ 0.02
PHGDH-215ENST00000641371 EIF4G3O43432 1585 aaKnown RBP15.19■□□□□ 0.02
PHGDH-215ENST00000641371 TRIM26Q12899 539 aaPredicted RBP15.18■□□□□ 0.02
PHGDH-215ENST00000641371 MAGI1Q96QZ7 1491 aaPredicted RBP15.18■□□□□ 0.02
PHGDH-215ENST00000641371 AQRO60306 1485 aaKnown RBP eCLIP15.16■□□□□ 0.023e-7■□□□□ 10.7
PHGDH-215ENST00000641371 ARHGAP35Q9NRY4 1499 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms