RNA–Protein interactions for RNA: YOR006C

TSR3, Transcript of Protein required for 20S pre-rRNA processing, yeastyeast

Gene TSR3, Length 942 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TSR3YOR006C MTC1P47018 478 aaKnown RBP17.35■□□□□ 0.37
TSR3YOR006C DRS1P32892 752 aaKnown RBP17.1■□□□□ 0.33
TSR3YOR006C DIP2Q12220 943 aaPredicted RBP14.67□□□□□ -0.06
TSR3YOR006C BFR2Q06631 534 aaKnown RBP14.66□□□□□ -0.06
TSR3YOR006C FAP1P53971 965 aa14.6□□□□□ -0.07
TSR3YOR006C AVT3P36062 692 aa14.37□□□□□ -0.11
TSR3YOR006C ISW2Q08773 1120 aa14.24□□□□□ -0.13
TSR3YOR006C PRI1P10363 409 aa14.1□□□□□ -0.15
TSR3YOR006C RPG1P38249 964 aaKnown RBP13.99□□□□□ -0.17
TSR3YOR006C RSE1Q04693 1361 aaKnown RBP13.96□□□□□ -0.18
TSR3YOR006C AAD16Q02895 342 aa13.93□□□□□ -0.18
TSR3YOR006C PRY3P47033 881 aa13.65□□□□□ -0.22
TSR3YOR006C TFA1P36100 482 aa13.58□□□□□ -0.24
TSR3YOR006C RPL17AP05740 184 aaKnown RBP13.42□□□□□ -0.26
TSR3YOR006C RPL17BP46990 184 aaKnown RBP13.42□□□□□ -0.26
TSR3YOR006C TSR3Q12094 313 aaKnown RBP13.35□□□□□ -0.27
TSR3YOR006C REB1P21538 810 aa13.33□□□□□ -0.28
TSR3YOR006C HAA1Q12753 694 aaKnown RBP12.93□□□□□ -0.34
TSR3YOR006C MRPL32P25348 183 aa12.9□□□□□ -0.34
TSR3YOR006C SPT21P35209 758 aa12.88□□□□□ -0.35
TSR3YOR006C YCK3P39962 524 aa12.81□□□□□ -0.36
TSR3YOR006C RIM101P33400 625 aa12.66□□□□□ -0.38
TSR3YOR006C YKR023WP36119 530 aaKnown RBP12.52□□□□□ -0.41
TSR3YOR006C CDC27P38042 758 aa12.32□□□□□ -0.44
TSR3YOR006C TFC8Q12308 588 aa12.3□□□□□ -0.44
TSR3YOR006C HOP09932 586 aa12.26□□□□□ -0.45
TSR3YOR006C OXP1P28273 1286 aa12.21□□□□□ -0.45
TSR3YOR006C INO80P53115 1489 aa12.19□□□□□ -0.46
TSR3YOR006C DCD1P06773 312 aa12.15□□□□□ -0.46
TSR3YOR006C MON2P48563 1636 aaPredicted RBP12.15□□□□□ -0.47
TSR3YOR006C YIL055CP40523 627 aaKnown RBP12.14□□□□□ -0.47
TSR3YOR006C YGL015CP33199 130 aa12.13□□□□□ -0.47
TSR3YOR006C PTP3P40048 928 aa12.06□□□□□ -0.48
TSR3YOR006C YAH1Q12184 172 aaKnown RBP12.01□□□□□ -0.49
TSR3YOR006C SSP1P38871 571 aa11.98□□□□□ -0.49
TSR3YOR006C UBP10P53874 792 aaPredicted RBP11.97□□□□□ -0.49
TSR3YOR006C BCH2P36122 765 aa11.92□□□□□ -0.5
TSR3YOR006C RSM7P47150 247 aa11.92□□□□□ -0.5
TSR3YOR006C ARP8Q12386 881 aaKnown RBP RIP-Chip data11.88□□□□□ -0.51not detected
TSR3YOR006C MAP2P38174 421 aaKnown RBP11.86□□□□□ -0.51
TSR3YOR006C YLR271WQ06152 274 aa11.84□□□□□ -0.51
TSR3YOR006C SCY1P53009 804 aa11.8□□□□□ -0.52
TSR3YOR006C TCB3Q03640 1545 aaKnown RBP11.8□□□□□ -0.52
TSR3YOR006C SGS1P35187 1447 aa11.78□□□□□ -0.52
TSR3YOR006C BBC1P47068 1157 aa11.74□□□□□ -0.53
TSR3YOR006C AI2P03876 854 aa11.73□□□□□ -0.53
TSR3YOR006C EPS1P40557 701 aa11.7□□□□□ -0.54
TSR3YOR006C SWR1Q05471 1514 aa11.68□□□□□ -0.54
TSR3YOR006C TY1B-DR4Q07793 1604 aa11.66□□□□□ -0.54
TSR3YOR006C SLX5P32828 619 aaKnown RBP11.65□□□□□ -0.54
TSR3YOR006C BDF1P35817 686 aa11.63□□□□□ -0.55
TSR3YOR006C MGA2P40578 1113 aa11.61□□□□□ -0.55
TSR3YOR006C PSD2P53037 1138 aaKnown RBP11.58□□□□□ -0.56
TSR3YOR006C DNA2P38859 1522 aa11.58□□□□□ -0.56
TSR3YOR006C TIF4632P39936 914 aaKnown RBP11.51□□□□□ -0.57
TSR3YOR006C KOG1P38873 1557 aa11.48□□□□□ -0.57
TSR3YOR006C CST9Q06032 482 aa11.45□□□□□ -0.58
TSR3YOR006C TGL3P40308 642 aa11.4□□□□□ -0.58
TSR3YOR006C SPT6P23615 1451 aaKnown RBP11.35□□□□□ -0.59
TSR3YOR006C HSL1P34244 1518 aa11.35□□□□□ -0.59
TSR3YOR006C MRM1P25270 412 aa11.34□□□□□ -0.59
TSR3YOR006C RQC2Q12532 1038 aaKnown RBP11.31□□□□□ -0.6
TSR3YOR006C SPA2P23201 1466 aaKnown RBP11.31□□□□□ -0.6
TSR3YOR006C RTG3P38165 486 aa11.21□□□□□ -0.61
TSR3YOR006C NSR1P27476 414 aaKnown RBP RIP-Chip data11.19□□□□□ -0.62not detected
TSR3YOR006C HIR3P47171 1648 aa11.11□□□□□ -0.63
TSR3YOR006C YAP5P40574 245 aa11.11□□□□□ -0.63
TSR3YOR006C RCR1P38212 213 aa11.07□□□□□ -0.64
TSR3YOR006C VPS29P38759 282 aa11.06□□□□□ -0.64
TSR3YOR006C YOR238WQ08634 303 aa11.06□□□□□ -0.64
TSR3YOR006C YMR1P47147 688 aaKnown RBP RIP-Chip data11.05□□□□□ -0.64not detected
TSR3YOR006C DMA1P38823 416 aa11.03□□□□□ -0.64
TSR3YOR006C RAM2P29703 316 aa11.01□□□□□ -0.65
TSR3YOR006C ECM5Q03214 1411 aa11.01□□□□□ -0.65
TSR3YOR006C MST1P07236 462 aa11□□□□□ -0.65
TSR3YOR006C BUD4P47136 1447 aa10.97□□□□□ -0.65
TSR3YOR006C XRN1P22147 1528 aaKnown RBP10.97□□□□□ -0.65
TSR3YOR006C SSN2P38931 1420 aa10.96□□□□□ -0.65
TSR3YOR006C DBP1P24784 617 aaKnown RBP10.95□□□□□ -0.66
TSR3YOR006C THO2P53552 1597 aaKnown RBP10.94□□□□□ -0.66
TSR3YOR006C MAK11P20484 414 aaKnown RBP10.94□□□□□ -0.66
TSR3YOR006C STS1P38637 319 aa10.91□□□□□ -0.66
TSR3YOR006C YFR006WP43590 535 aa10.88□□□□□ -0.67
TSR3YOR006C PIB1Q06651 286 aa10.87□□□□□ -0.67
TSR3YOR006C GTT3P39996 337 aa10.85□□□□□ -0.67
TSR3YOR006C UBP9P39967 754 aa10.82□□□□□ -0.68
TSR3YOR006C MDS3P53094 1487 aa10.81□□□□□ -0.68
TSR3YOR006C VMA1P17255 1071 aaKnown RBP10.77□□□□□ -0.69
TSR3YOR006C REV3P14284 1504 aa10.77□□□□□ -0.69
TSR3YOR006C MIF2P35201 549 aa10.76□□□□□ -0.69
TSR3YOR006C COQ8P27697 501 aa10.75□□□□□ -0.69
TSR3YOR006C SET1P38827 1080 aaKnown RBP10.74□□□□□ -0.69
TSR3YOR006C NOP53Q12080 455 aaKnown RBP10.73□□□□□ -0.69
TSR3YOR006C PEP1P32319 1579 aa10.7□□□□□ -0.7
TSR3YOR006C SAM3Q08986 587 aa10.69□□□□□ -0.7
TSR3YOR006C ATG2P53855 1592 aa10.69□□□□□ -0.7
TSR3YOR006C BUD31P25337 157 aaPredicted RBP10.68□□□□□ -0.7
TSR3YOR006C TAF2P23255 1407 aa10.67□□□□□ -0.7
TSR3YOR006C EDS1P38073 919 aa10.66□□□□□ -0.7
TSR3YOR006C IFH1P39520 1085 aa10.66□□□□□ -0.7
Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms