RNA–Protein interactions for RNA: YLR022C

SDO1, Transcript of Guanine nucleotide exchange factor (GEF) for Ria1p, yeastyeast

Gene SDO1, Length 753 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SDO1YLR022C FAP1P53971 965 aa14.03□□□□□ -0.16
SDO1YLR022C MTC1P47018 478 aaKnown RBP13.87□□□□□ -0.19
SDO1YLR022C PRY3P47033 881 aa13.25□□□□□ -0.29
SDO1YLR022C AAD16Q02895 342 aa12.6□□□□□ -0.39
SDO1YLR022C PRI1P10363 409 aa12.51□□□□□ -0.41
SDO1YLR022C YCK3P39962 524 aa12.51□□□□□ -0.41
SDO1YLR022C HAA1Q12753 694 aaKnown RBP12.41□□□□□ -0.42
SDO1YLR022C DRS1P32892 752 aaKnown RBP12.12□□□□□ -0.47
SDO1YLR022C ISW2Q08773 1120 aa11.81□□□□□ -0.52
SDO1YLR022C RPG1P38249 964 aaKnown RBP11.7□□□□□ -0.54
SDO1YLR022C TSR3Q12094 313 aaKnown RBP11.69□□□□□ -0.54
SDO1YLR022C MRPL32P25348 183 aa11.27□□□□□ -0.61
SDO1YLR022C YGL015CP33199 130 aa11.24□□□□□ -0.61
SDO1YLR022C BUD31P25337 157 aaPredicted RBP10.94□□□□□ -0.66
SDO1YLR022C DIP2Q12220 943 aaPredicted RBP10.69□□□□□ -0.7
SDO1YLR022C RSE1Q04693 1361 aaKnown RBP10.66□□□□□ -0.7
SDO1YLR022C REB1P21538 810 aa10.48□□□□□ -0.73
SDO1YLR022C CDC27P38042 758 aa10.44□□□□□ -0.74
SDO1YLR022C RPL17AP05740 184 aaKnown RBP10.39□□□□□ -0.75
SDO1YLR022C RPL17BP46990 184 aaKnown RBP10.39□□□□□ -0.75
SDO1YLR022C UBP10P53874 792 aaPredicted RBP10.39□□□□□ -0.75
SDO1YLR022C MAP2P38174 421 aaKnown RBP10.28□□□□□ -0.76
SDO1YLR022C SIS1P25294 352 aaKnown RBP10.24□□□□□ -0.77
SDO1YLR022C AVT3P36062 692 aa10.2□□□□□ -0.78
SDO1YLR022C YKR023WP36119 530 aaKnown RBP10.09□□□□□ -0.79
SDO1YLR022C UBP9P39967 754 aa10.07□□□□□ -0.8
SDO1YLR022C TIF4632P39936 914 aaKnown RBP9.96□□□□□ -0.82
SDO1YLR022C TGL3P40308 642 aa9.96□□□□□ -0.82
SDO1YLR022C BFR2Q06631 534 aaKnown RBP9.95□□□□□ -0.82
SDO1YLR022C SPT21P35209 758 aa9.88□□□□□ -0.83
SDO1YLR022C TFC8Q12308 588 aa9.88□□□□□ -0.83
SDO1YLR022C HOP09932 586 aa9.83□□□□□ -0.84
SDO1YLR022C DCD1P06773 312 aa9.82□□□□□ -0.84
SDO1YLR022C SCY1P53009 804 aa9.81□□□□□ -0.84
SDO1YLR022C SLX5P32828 619 aaKnown RBP9.79□□□□□ -0.84
SDO1YLR022C BCH2P36122 765 aa9.5□□□□□ -0.89
SDO1YLR022C MST1P07236 462 aa9.4□□□□□ -0.9
SDO1YLR022C YBL029C-AQ3E756 94 aa9.4□□□□□ -0.9
SDO1YLR022C VNX1P42839 908 aa9.26□□□□□ -0.93
SDO1YLR022C YOR238WQ08634 303 aa9.25□□□□□ -0.93
SDO1YLR022C RIM101P33400 625 aa9.23□□□□□ -0.93
SDO1YLR022C BDF1P35817 686 aa9.16□□□□□ -0.94
SDO1YLR022C SPP1Q03012 353 aa9.16□□□□□ -0.94
SDO1YLR022C EPS1P40557 701 aa9.15□□□□□ -0.94
SDO1YLR022C AIR2Q12476 344 aaKnown RBP9.15□□□□□ -0.94
SDO1YLR022C NSR1P27476 414 aaKnown RBP RIP-Chip data9.14□□□□□ -0.95not detected
SDO1YLR022C YJL171CP46992 396 aa9.12□□□□□ -0.95
SDO1YLR022C FKH1P40466 484 aa9.08□□□□□ -0.96
SDO1YLR022C WSC3Q12215 556 aa9□□□□□ -0.97
SDO1YLR022C TIF11P38912 153 aaKnown RBP8.99□□□□□ -0.97
SDO1YLR022C YAP5P40574 245 aa8.99□□□□□ -0.97
SDO1YLR022C OXP1P28273 1286 aa8.92□□□□□ -0.98
SDO1YLR022C BMT6Q12291 365 aa8.89□□□□□ -0.99
SDO1YLR022C LDB19Q12502 818 aa8.84□□□□□ -0.99
SDO1YLR022C PTP3P40048 928 aa8.83□□□□□ -1
SDO1YLR022C GTT3P39996 337 aa8.8□□□□□ -1
SDO1YLR022C YIL055CP40523 627 aaKnown RBP8.8□□□□□ -1
SDO1YLR022C IOC2Q12072 812 aa8.8□□□□□ -1
SDO1YLR022C ULI1P43604 169 aa8.78□□□□□ -1
SDO1YLR022C BBC1P47068 1157 aa8.75□□□□□ -1.01
SDO1YLR022C YAH1Q12184 172 aaKnown RBP8.7□□□□□ -1.02
SDO1YLR022C RSM7P47150 247 aa8.64□□□□□ -1.03
SDO1YLR022C AI2P03876 854 aa8.63□□□□□ -1.03
SDO1YLR022C TFA1P36100 482 aa8.63□□□□□ -1.03
SDO1YLR022C MSB4Q12317 492 aa8.6□□□□□ -1.03
SDO1YLR022C EAP1P36041 632 aaKnown RBP8.59□□□□□ -1.03
SDO1YLR022C RTG1P32607 177 aa8.57□□□□□ -1.04
SDO1YLR022C NCR1Q12200 1170 aa8.55□□□□□ -1.04
SDO1YLR022C PIB1Q06651 286 aa8.5□□□□□ -1.05
SDO1YLR022C TRP5P00931 707 aaKnown RBP8.47□□□□□ -1.05
SDO1YLR022C SEC61P32915 480 aa8.47□□□□□ -1.05
SDO1YLR022C YLR271WQ06152 274 aa8.47□□□□□ -1.05
SDO1YLR022C YNL035CP53962 389 aaKnown RBP8.46□□□□□ -1.06
SDO1YLR022C BCK2P33306 851 aa8.44□□□□□ -1.06
SDO1YLR022C YOL036WQ08206 761 aa8.42□□□□□ -1.06
SDO1YLR022C SET4P42948 560 aa8.4□□□□□ -1.06
SDO1YLR022C PSD2P53037 1138 aaKnown RBP8.35□□□□□ -1.07
SDO1YLR022C TFG1P41895 735 aaPredicted RBP8.33□□□□□ -1.08
SDO1YLR022C CHL1P22516 861 aaPredicted RBP8.32□□□□□ -1.08
SDO1YLR022C MRM1P25270 412 aa8.31□□□□□ -1.08
SDO1YLR022C RGA2Q06407 1009 aa8.31□□□□□ -1.08
SDO1YLR022C SAP30P38429 201 aa8.29□□□□□ -1.08
SDO1YLR022C SSP1P38871 571 aa8.28□□□□□ -1.08
SDO1YLR022C PRE3P38624 215 aa8.24□□□□□ -1.09
SDO1YLR022C DAN4P47179 1161 aa8.24□□□□□ -1.09
SDO1YLR022C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.24□□□□□ -1.09not detected
SDO1YLR022C YDL129WQ07555 291 aa8.22□□□□□ -1.09
SDO1YLR022C SAM3Q08986 587 aa8.22□□□□□ -1.09
SDO1YLR022C JIP4Q03361 876 aa8.2□□□□□ -1.1
SDO1YLR022C CST9Q06032 482 aa8.2□□□□□ -1.1
SDO1YLR022C VMA1P17255 1071 aaKnown RBP8.19□□□□□ -1.1
SDO1YLR022C YMR1P47147 688 aaKnown RBP RIP-Chip data8.19□□□□□ -1.1not detected
SDO1YLR022C XDJ1P39102 459 aa8.18□□□□□ -1.1
SDO1YLR022C DBP1P24784 617 aaKnown RBP8.17□□□□□ -1.1
SDO1YLR022C VPS29P38759 282 aa8.11□□□□□ -1.11
SDO1YLR022C YFR006WP43590 535 aa8.11□□□□□ -1.11
SDO1YLR022C ABP1P15891 592 aaKnown RBP8.1□□□□□ -1.11
SDO1YLR022C VRP1P37370 817 aa8.09□□□□□ -1.11
SDO1YLR022C MGA2P40578 1113 aa8.09□□□□□ -1.11
SDO1YLR022C RTG3P38165 486 aa8.06□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms