RNA–Protein interactions for RNA: YDR498C

SEC20, Transcript of Membrane glycoprotein v-SNARE, yeastyeast

Gene SEC20, Length 1,152 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC20YDR498C MTC1P47018 478 aaKnown RBP11.65□□□□□ -0.54
SEC20YDR498C DRS1P32892 752 aaKnown RBP11.37□□□□□ -0.59
SEC20YDR498C SGS1P35187 1447 aa10.63□□□□□ -0.71
SEC20YDR498C TY1B-DR4Q07793 1604 aa10.44□□□□□ -0.74
SEC20YDR498C INO80P53115 1489 aa10.43□□□□□ -0.74
SEC20YDR498C MON2P48563 1636 aaPredicted RBP10.36□□□□□ -0.75
SEC20YDR498C TCB3Q03640 1545 aaKnown RBP10.34□□□□□ -0.75
SEC20YDR498C SPA2P23201 1466 aaKnown RBP10.21□□□□□ -0.78
SEC20YDR498C SSN2P38931 1420 aa10.18□□□□□ -0.78
SEC20YDR498C HSL1P34244 1518 aa10.14□□□□□ -0.79
SEC20YDR498C SWR1Q05471 1514 aa10.11□□□□□ -0.79
SEC20YDR498C FAP1P53971 965 aa10.08□□□□□ -0.8
SEC20YDR498C SPT6P23615 1451 aaKnown RBP10.03□□□□□ -0.8
SEC20YDR498C HIR3P47171 1648 aa9.95□□□□□ -0.82
SEC20YDR498C DIP2Q12220 943 aaPredicted RBP9.8□□□□□ -0.84
SEC20YDR498C XRN1P22147 1528 aaKnown RBP9.8□□□□□ -0.84
SEC20YDR498C DNA2P38859 1522 aa9.78□□□□□ -0.84
SEC20YDR498C REV3P14284 1504 aa9.72□□□□□ -0.85
SEC20YDR498C KOG1P38873 1557 aa9.7□□□□□ -0.86
SEC20YDR498C SIN3P22579 1536 aa9.68□□□□□ -0.86
SEC20YDR498C BFR2Q06631 534 aaKnown RBP9.67□□□□□ -0.86
SEC20YDR498C SSK2P53599 1579 aa9.64□□□□□ -0.87
SEC20YDR498C THO2P53552 1597 aaKnown RBP9.63□□□□□ -0.87
SEC20YDR498C ISW2Q08773 1120 aa9.59□□□□□ -0.87
SEC20YDR498C ESP1Q03018 1630 aa9.58□□□□□ -0.88
SEC20YDR498C ATG2P53855 1592 aa9.58□□□□□ -0.88
SEC20YDR498C PRI1P10363 409 aa9.57□□□□□ -0.88
SEC20YDR498C AVT3P36062 692 aa9.51□□□□□ -0.89
SEC20YDR498C BUD4P47136 1447 aa9.49□□□□□ -0.89
SEC20YDR498C RPG1P38249 964 aaKnown RBP9.49□□□□□ -0.89
SEC20YDR498C PEP1P32319 1579 aa9.49□□□□□ -0.89
SEC20YDR498C AAD16Q02895 342 aa9.47□□□□□ -0.89
SEC20YDR498C TAF2P23255 1407 aa9.47□□□□□ -0.89
SEC20YDR498C ECM5Q03214 1411 aa9.45□□□□□ -0.9
SEC20YDR498C PRY3P47033 881 aa9.44□□□□□ -0.9
SEC20YDR498C MYO2P19524 1574 aaKnown RBP9.43□□□□□ -0.9
SEC20YDR498C MDS3P53094 1487 aa9.4□□□□□ -0.9
SEC20YDR498C TY2B-LR1P0C2J3 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-FP0CX63 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-GR2P0CX64 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-CP25384 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-DR2Q03494 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY1B-DR1Q03855 1755 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-DR3Q07791 1770 aaKnown RBP9.34□□□□□ -0.91
SEC20YDR498C TY2B-OR1Q12113 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-DR1Q12472 1770 aa9.34□□□□□ -0.91
SEC20YDR498C TY2B-OR2Q12501 1770 aa9.34□□□□□ -0.91
SEC20YDR498C RSE1Q04693 1361 aaKnown RBP9.34□□□□□ -0.91
SEC20YDR498C YPK9Q12697 1472 aa9.32□□□□□ -0.92
SEC20YDR498C TY1B-DR3Q99231 1755 aa9.29□□□□□ -0.92
SEC20YDR498C SKI3P17883 1432 aaKnown RBP9.29□□□□□ -0.92
SEC20YDR498C SCC2Q04002 1493 aa9.28□□□□□ -0.92
SEC20YDR498C POL1P13382 1468 aa9.26□□□□□ -0.93
SEC20YDR498C TY2B-BQ12491 1770 aa9.25□□□□□ -0.93
SEC20YDR498C RKR1Q04781 1562 aa9.22□□□□□ -0.93
SEC20YDR498C TY1B-BRQ12193 1756 aa9.21□□□□□ -0.94
SEC20YDR498C TY1B-GR3Q12316 1755 aa9.21□□□□□ -0.94
SEC20YDR498C TY1B-ORQ92393 1755 aa9.21□□□□□ -0.94
SEC20YDR498C RPO31P04051 1460 aa9.21□□□□□ -0.94
SEC20YDR498C STU1P38198 1513 aa9.21□□□□□ -0.94
SEC20YDR498C BPT1P14772 1559 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-HO13535 1793 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-DR5P0C2I2 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-DR6P0C2I3 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-LR2P0C2I5 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-LR3P0C2I6 1755 aaKnown RBP9.19□□□□□ -0.94
SEC20YDR498C TY1B-PR1P0C2I9 1755 aaKnown RBP9.19□□□□□ -0.94
SEC20YDR498C TY1B-PR2P0C2J0 1756 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-PR3P0C2J1 1755 aaKnown RBP9.19□□□□□ -0.94
SEC20YDR498C TY1B-JR1P47098 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-ML2Q03434 1755 aaKnown RBP9.19□□□□□ -0.94
SEC20YDR498C TY1B-ER1Q03612 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-ML1Q04711 1755 aaKnown RBP9.19□□□□□ -0.94
SEC20YDR498C TY1B-GR2Q12269 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-OLQ12273 1755 aa9.19□□□□□ -0.94
SEC20YDR498C TY1B-PLQ12414 1755 aaKnown RBP9.19□□□□□ -0.94
SEC20YDR498C YCF1P39109 1515 aaKnown RBP9.17□□□□□ -0.94
SEC20YDR498C CHD1P32657 1468 aa9.14□□□□□ -0.95
SEC20YDR498C UFD4P33202 1483 aa9.13□□□□□ -0.95
SEC20YDR498C YOR1P53049 1477 aa9.13□□□□□ -0.95
SEC20YDR498C TSR3Q12094 313 aaKnown RBP9.12□□□□□ -0.95
SEC20YDR498C MMS22Q06164 1454 aa9.1□□□□□ -0.95
SEC20YDR498C TOP2P06786 1428 aaKnown RBP9.08□□□□□ -0.96
SEC20YDR498C RPL17AP05740 184 aaKnown RBP9.04□□□□□ -0.96
SEC20YDR498C RPL17BP46990 184 aaKnown RBP9.04□□□□□ -0.96
SEC20YDR498C TY1B-JR2P47100 1755 aaKnown RBP9.03□□□□□ -0.96
SEC20YDR498C TY1B-ER2Q03619 1755 aa9.03□□□□□ -0.96
SEC20YDR498C TY1B-MR1Q04214 1755 aa9.03□□□□□ -0.96
SEC20YDR498C TY1B-MR2Q04670 1755 aaKnown RBP9.03□□□□□ -0.96
SEC20YDR498C TY1B-LR1Q12088 1755 aaKnown RBP9.03□□□□□ -0.96
SEC20YDR498C TY1B-NL1Q12112 1755 aa9.03□□□□□ -0.96
SEC20YDR498C TY1B-GR1Q12141 1755 aa9.03□□□□□ -0.96
SEC20YDR498C TY1B-BLQ12490 1755 aa9.03□□□□□ -0.96
SEC20YDR498C SMC4Q12267 1418 aa9.03□□□□□ -0.96
SEC20YDR498C MYO4P32492 1471 aa9.01□□□□□ -0.97
SEC20YDR498C MLP2P40457 1679 aa8.99□□□□□ -0.97
SEC20YDR498C CDC25P04821 1589 aa8.99□□□□□ -0.97
SEC20YDR498C REB1P21538 810 aa8.97□□□□□ -0.97
SEC20YDR498C ESC1Q03661 1658 aaKnown RBP8.97□□□□□ -0.97
SEC20YDR498C YTA7P40340 1379 aa8.97□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 8.6 ms