Protein–RNA interactions for Protein: P47100

TY1B-JR2, Transposon Ty1-JR2 Gag-Pol polyprotein, yeastyeast

Known RBP Predictions only

Length 1,755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1B-JR2P47100 YML009W-BYML009W-B 477 nt32.47■■■□□ 2.79
TY1B-JR2P47100 NOP1YDL014W 984 nt31.1■■■□□ 2.57
TY1B-JR2P47100 NSR1YGR159C 1245 nt30.89■■■□□ 2.54
TY1B-JR2P47100 YKL036CYKL036C 393 nt29.87■■■□□ 2.37
TY1B-JR2P47100 YJL027CYJL027C 417 nt28.01■■■□□ 2.07
TY1B-JR2P47100 SCS3YGL126W 1143 nt27.87■■■□□ 2.05
TY1B-JR2P47100 Q0297Q0297 156 nt27.78■■■□□ 2.04
TY1B-JR2P47100 SRX1YKL086W 384 nt27.68■■■□□ 2.02
TY1B-JR2P47100 MDJ1YFL016C 1536 nt27.4■■□□□ 1.98
TY1B-JR2P47100 YCR051WYCR051W 669 nt26.38■■□□□ 1.81
TY1B-JR2P47100 YOL085CYOL085C 342 nt25.69■■□□□ 1.7
TY1B-JR2P47100 PKP1YIL042C 1185 nt25.66■■□□□ 1.7
TY1B-JR2P47100 SCJ1YMR214W 1134 nt25.11■■□□□ 1.61
TY1B-JR2P47100 RPP1BYDL130W 321 nt24.89■■□□□ 1.57
TY1B-JR2P47100 ATS1YAL020C 1002 nt24.8■■□□□ 1.56
TY1B-JR2P47100 TRN1tP(UGG)A 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 SUF9tP(UGG)F 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 SUF8tP(UGG)H 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 tP(UGG)LtP(UGG)L 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 SUF7tP(UGG)M 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 tP(UGG)N1tP(UGG)N1 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 tP(UGG)N2tP(UGG)N2 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 tP(UGG)O1tP(UGG)O1 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 SUF11tP(UGG)O2 72 nt24.67■■□□□ 1.54
TY1B-JR2P47100 DBP2YNL112W 1641 nt24.43■■□□□ 1.5
TY1B-JR2P47100 CCC1YLR220W 969 nt24.36■■□□□ 1.49
TY1B-JR2P47100 PET122YER153C 765 nt24.03■■□□□ 1.44
TY1B-JR2P47100 SCR1SCR1 522 nt23.67■■□□□ 1.38
TY1B-JR2P47100 tP(UGG)O3tP(UGG)O3 72 nt23.45■■□□□ 1.34
TY1B-JR2P47100 RTC3YHR087W 336 nt23.25■■□□□ 1.31
TY1B-JR2P47100 RRN5YLR141W 1092 nt23.18■■□□□ 1.3
TY1B-JR2P47100 RSB1YOR049C 1065 nt23.15■■□□□ 1.3
TY1B-JR2P47100 RVS167YDR388W 1449 nt22.82■■□□□ 1.24
TY1B-JR2P47100 PST2YDR032C 597 nt22.8■■□□□ 1.24
TY1B-JR2P47100 YER088W-BYER088W-B 147 nt22.76■■□□□ 1.23
TY1B-JR2P47100 YBR190WYBR190W 312 nt22.61■■□□□ 1.21
TY1B-JR2P47100 YKL097CYKL097C 411 nt22.51■■□□□ 1.19
TY1B-JR2P47100 YDJ1YNL064C 1230 nt22.43■■□□□ 1.18
TY1B-JR2P47100 SHR5YOL110W 714 nt22.32■■□□□ 1.16
TY1B-JR2P47100 GAR1YHR089C 618 nt22.09■■□□□ 1.13
TY1B-JR2P47100 SHU1YHL006C 453 nt21.99■■□□□ 1.11
TY1B-JR2P47100 DEP1YAL013W 1218 nt21.79■■□□□ 1.08
TY1B-JR2P47100 YOR139CYOR139C 393 nt21.66■■□□□ 1.06
TY1B-JR2P47100 YAL037C-BYAL037C-B 975 nt21.64■■□□□ 1.05
TY1B-JR2P47100 URN1YPR152C 1398 nt21.41■■□□□ 1.02
TY1B-JR2P47100 TIR1YER011W 765 nt21.23■□□□□ 0.99
TY1B-JR2P47100 SRB2YHR041C 633 nt21.12■□□□□ 0.97
TY1B-JR2P47100 NPL3YDR432W 1245 nt21.11■□□□□ 0.97
TY1B-JR2P47100 MNP1YGL068W 585 nt21.06■□□□□ 0.96
TY1B-JR2P47100 YNL208WYNL208W 600 nt21.01■□□□□ 0.95
TY1B-JR2P47100 SSA1YAL005C 1929 nt20.93■□□□□ 0.94
TY1B-JR2P47100 RPN10YHR200W 807 nt20.88■□□□□ 0.93
TY1B-JR2P47100 WWM1YFL010C 636 nt20.71■□□□□ 0.91
TY1B-JR2P47100 OPI9YLR338W 858 nt20.68■□□□□ 0.9
TY1B-JR2P47100 HOM6YJR139C 1080 nt20.64■□□□□ 0.89
TY1B-JR2P47100 SAH1YER043C 1350 nt20.61■□□□□ 0.89
TY1B-JR2P47100 YJR120WYJR120W 351 nt20.57■□□□□ 0.88
TY1B-JR2P47100 YOL037CYOL037C 354 nt20.57■□□□□ 0.88
TY1B-JR2P47100 YGR021WYGR021W 873 nt20.47■□□□□ 0.87
TY1B-JR2P47100 tM(CAU)CtM(CAU)C 72 nt20.39■□□□□ 0.86
TY1B-JR2P47100 IMT4tM(CAU)E 72 nt20.39■□□□□ 0.86
TY1B-JR2P47100 IMT3tM(CAU)J3 72 nt20.39■□□□□ 0.86
TY1B-JR2P47100 IMT1tM(CAU)O1 72 nt20.39■□□□□ 0.86
TY1B-JR2P47100 IMT2tM(CAU)P 72 nt20.39■□□□□ 0.86
TY1B-JR2P47100 YJR018WYJR018W 363 nt20.32■□□□□ 0.84
TY1B-JR2P47100 RKM5YLR137W 1104 nt20.25■□□□□ 0.83
TY1B-JR2P47100 ARE1YCR048W 1833 nt20.15■□□□□ 0.82
TY1B-JR2P47100 PUS2YGL063W 1113 nt20.13■□□□□ 0.81
TY1B-JR2P47100 MOT3YMR070W 1473 nt20.12■□□□□ 0.81
TY1B-JR2P47100 YHR049C-AYHR049C-A 297 nt20.11■□□□□ 0.81
TY1B-JR2P47100 SSA3YBL075C 1950 nt20.11■□□□□ 0.81
TY1B-JR2P47100 PUT4YOR348C 1884 nt20.1■□□□□ 0.81
TY1B-JR2P47100 YFL021C-AYFL021C-A 855 nt20.07■□□□□ 0.8
TY1B-JR2P47100 PUN1YLR414C 792 nt20.01■□□□□ 0.79
TY1B-JR2P47100 YLR281CYLR281C 468 nt19.95■□□□□ 0.78
TY1B-JR2P47100 RPP2BYDR382W 333 nt19.94■□□□□ 0.78
TY1B-JR2P47100 WHI5YOR083W 888 nt19.87■□□□□ 0.77
TY1B-JR2P47100 BDH2YAL061W 1254 nt19.85■□□□□ 0.77
TY1B-JR2P47100 BSC6YOL137W 1494 nt19.83■□□□□ 0.76
TY1B-JR2P47100 YLR236CYLR236C 324 nt19.83■□□□□ 0.76
TY1B-JR2P47100 FMP45YDL222C 930 nt19.77■□□□□ 0.76
TY1B-JR2P47100 YPR011CYPR011C 981 nt19.73■□□□□ 0.75
TY1B-JR2P47100 PTC2YER089C 1395 nt19.72■□□□□ 0.75
TY1B-JR2P47100 POA1YBR022W 534 nt19.62■□□□□ 0.73
TY1B-JR2P47100 BUD23YCR047C 828 nt19.6■□□□□ 0.73
TY1B-JR2P47100 DSK2YMR276W 1122 nt19.53■□□□□ 0.72
TY1B-JR2P47100 FIS1YIL065C 468 nt19.52■□□□□ 0.72
TY1B-JR2P47100 YBL100CYBL100C 315 nt19.52■□□□□ 0.71
TY1B-JR2P47100 LPX1YOR084W 1164 nt19.39■□□□□ 0.7
TY1B-JR2P47100 YLR154C-GYLR154C-G 150 nt19.37■□□□□ 0.69
TY1B-JR2P47100 LSM3YLR438C-A 270 nt19.35■□□□□ 0.69
TY1B-JR2P47100 PHO4YFR034C 939 nt19.33■□□□□ 0.68
TY1B-JR2P47100 YCH1YGR203W 447 nt19.32■□□□□ 0.68
TY1B-JR2P47100 FPR4YLR449W 1179 nt19.31■□□□□ 0.68
TY1B-JR2P47100 SPP1YPL138C 1062 nt19.31■□□□□ 0.68
TY1B-JR2P47100 NAB2YGL122C 1578 nt19.31■□□□□ 0.68
TY1B-JR2P47100 UBX6YJL048C 1191 nt19.29■□□□□ 0.68
TY1B-JR2P47100 MRPL8YJL063C 717 nt19.29■□□□□ 0.68
TY1B-JR2P47100 RTG1YOL067C 534 nt19.28■□□□□ 0.68
TY1B-JR2P47100 IMP2'YIL154C 1041 nt19.21■□□□□ 0.67
Retrieved 100 of 7,029 protein–RNA pairs in 21.7 ms