Protein–RNA interactions for Protein: P0C2J0

TY1B-PR2, Transposon Ty1-PR2 Gag-Pol polyprotein, yeastyeast

Predictions only

Length 1,756 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1B-PR2P0C2J0 YML009W-BYML009W-B 477 nt33,08■■■□□ 2,89
TY1B-PR2P0C2J0 NOP1YDL014W 984 nt31,69■■■□□ 2,66
TY1B-PR2P0C2J0 NSR1YGR159C 1245 nt31,43■■■□□ 2,62
TY1B-PR2P0C2J0 YKL036CYKL036C 393 nt30,47■■■□□ 2,47
TY1B-PR2P0C2J0 YJL027CYJL027C 417 nt28,56■■■□□ 2,16
TY1B-PR2P0C2J0 SCS3YGL126W 1143 nt28,44■■■□□ 2,14
TY1B-PR2P0C2J0 Q0297Q0297 156 nt28,32■■■□□ 2,12
TY1B-PR2P0C2J0 SRX1YKL086W 384 nt28,2■■■□□ 2,11
TY1B-PR2P0C2J0 MDJ1YFL016C 1536 nt27,88■■■□□ 2,05
TY1B-PR2P0C2J0 YCR051WYCR051W 669 nt26,88■■□□□ 1,89
TY1B-PR2P0C2J0 YOL085CYOL085C 342 nt26,2■■□□□ 1,78
TY1B-PR2P0C2J0 PKP1YIL042C 1185 nt26,17■■□□□ 1,78
TY1B-PR2P0C2J0 SCJ1YMR214W 1134 nt25,65■■□□□ 1,7
TY1B-PR2P0C2J0 RPP1BYDL130W 321 nt25,37■■□□□ 1,65
TY1B-PR2P0C2J0 ATS1YAL020C 1002 nt25,31■■□□□ 1,64
TY1B-PR2P0C2J0 TRN1tP(UGG)A 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 SUF9tP(UGG)F 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 SUF8tP(UGG)H 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 tP(UGG)LtP(UGG)L 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 SUF7tP(UGG)M 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 tP(UGG)N1tP(UGG)N1 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 tP(UGG)N2tP(UGG)N2 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 tP(UGG)O1tP(UGG)O1 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 SUF11tP(UGG)O2 72 nt25,13■■□□□ 1,61
TY1B-PR2P0C2J0 DBP2YNL112W 1641 nt24,86■■□□□ 1,57
TY1B-PR2P0C2J0 CCC1YLR220W 969 nt24,81■■□□□ 1,56
TY1B-PR2P0C2J0 PET122YER153C 765 nt24,5■■□□□ 1,51
TY1B-PR2P0C2J0 SCR1SCR1 522 nt24,13■■□□□ 1,45
TY1B-PR2P0C2J0 tP(UGG)O3tP(UGG)O3 72 nt23,89■■□□□ 1,42
TY1B-PR2P0C2J0 RTC3YHR087W 336 nt23,75■■□□□ 1,39
TY1B-PR2P0C2J0 RRN5YLR141W 1092 nt23,63■■□□□ 1,37
TY1B-PR2P0C2J0 RSB1YOR049C 1065 nt23,61■■□□□ 1,37
TY1B-PR2P0C2J0 PST2YDR032C 597 nt23,26■■□□□ 1,31
TY1B-PR2P0C2J0 RVS167YDR388W 1449 nt23,23■■□□□ 1,31
TY1B-PR2P0C2J0 YER088W-BYER088W-B 147 nt23,19■■□□□ 1,3
TY1B-PR2P0C2J0 YKL097CYKL097C 411 nt22,99■■□□□ 1,27
TY1B-PR2P0C2J0 YBR190WYBR190W 312 nt22,99■■□□□ 1,27
TY1B-PR2P0C2J0 YDJ1YNL064C 1230 nt22,84■■□□□ 1,25
TY1B-PR2P0C2J0 SHR5YOL110W 714 nt22,72■■□□□ 1,23
TY1B-PR2P0C2J0 GAR1YHR089C 618 nt22,5■■□□□ 1,19
TY1B-PR2P0C2J0 SHU1YHL006C 453 nt22,43■■□□□ 1,18
TY1B-PR2P0C2J0 DEP1YAL013W 1218 nt22,18■■□□□ 1,14
TY1B-PR2P0C2J0 YOR139CYOR139C 393 nt22,11■■□□□ 1,13
TY1B-PR2P0C2J0 YAL037C-BYAL037C-B 975 nt22,07■■□□□ 1,12
TY1B-PR2P0C2J0 URN1YPR152C 1398 nt21,78■■□□□ 1,08
TY1B-PR2P0C2J0 TIR1YER011W 765 nt21,62■■□□□ 1,05
TY1B-PR2P0C2J0 NPL3YDR432W 1245 nt21,55■■□□□ 1,04
TY1B-PR2P0C2J0 SRB2YHR041C 633 nt21,52■■□□□ 1,04
TY1B-PR2P0C2J0 MNP1YGL068W 585 nt21,48■■□□□ 1,03
TY1B-PR2P0C2J0 YNL208WYNL208W 600 nt21,38■■□□□ 1,01
TY1B-PR2P0C2J0 SSA1YAL005C 1929 nt21,31■■□□□ 1
TY1B-PR2P0C2J0 RPN10YHR200W 807 nt21,25■□□□□ 0,99
TY1B-PR2P0C2J0 WWM1YFL010C 636 nt21,1■□□□□ 0,97
TY1B-PR2P0C2J0 OPI9YLR338W 858 nt21,04■□□□□ 0,96
TY1B-PR2P0C2J0 HOM6YJR139C 1080 nt21,03■□□□□ 0,96
TY1B-PR2P0C2J0 YOL037CYOL037C 354 nt20,98■□□□□ 0,95
TY1B-PR2P0C2J0 SAH1YER043C 1350 nt20,96■□□□□ 0,95
TY1B-PR2P0C2J0 YJR120WYJR120W 351 nt20,94■□□□□ 0,94
TY1B-PR2P0C2J0 YGR021WYGR021W 873 nt20,87■□□□□ 0,93
TY1B-PR2P0C2J0 tM(CAU)CtM(CAU)C 72 nt20,81■□□□□ 0,92
TY1B-PR2P0C2J0 IMT4tM(CAU)E 72 nt20,81■□□□□ 0,92
TY1B-PR2P0C2J0 IMT3tM(CAU)J3 72 nt20,81■□□□□ 0,92
TY1B-PR2P0C2J0 IMT1tM(CAU)O1 72 nt20,81■□□□□ 0,92
TY1B-PR2P0C2J0 IMT2tM(CAU)P 72 nt20,81■□□□□ 0,92
TY1B-PR2P0C2J0 YJR018WYJR018W 363 nt20,68■□□□□ 0,9
TY1B-PR2P0C2J0 RKM5YLR137W 1104 nt20,64■□□□□ 0,89
TY1B-PR2P0C2J0 MOT3YMR070W 1473 nt20,55■□□□□ 0,88
TY1B-PR2P0C2J0 PUS2YGL063W 1113 nt20,53■□□□□ 0,88
TY1B-PR2P0C2J0 ARE1YCR048W 1833 nt20,47■□□□□ 0,87
TY1B-PR2P0C2J0 SSA3YBL075C 1950 nt20,47■□□□□ 0,87
TY1B-PR2P0C2J0 YFL021C-AYFL021C-A 855 nt20,44■□□□□ 0,86
TY1B-PR2P0C2J0 YHR049C-AYHR049C-A 297 nt20,44■□□□□ 0,86
TY1B-PR2P0C2J0 PUT4YOR348C 1884 nt20,41■□□□□ 0,86
TY1B-PR2P0C2J0 PUN1YLR414C 792 nt20,35■□□□□ 0,85
TY1B-PR2P0C2J0 YLR281CYLR281C 468 nt20,34■□□□□ 0,85
TY1B-PR2P0C2J0 RPP2BYDR382W 333 nt20,29■□□□□ 0,84
TY1B-PR2P0C2J0 BSC6YOL137W 1494 nt20,27■□□□□ 0,83
TY1B-PR2P0C2J0 WHI5YOR083W 888 nt20,26■□□□□ 0,83
TY1B-PR2P0C2J0 YLR236CYLR236C 324 nt20,23■□□□□ 0,83
TY1B-PR2P0C2J0 BDH2YAL061W 1254 nt20,21■□□□□ 0,83
TY1B-PR2P0C2J0 FMP45YDL222C 930 nt20,16■□□□□ 0,82
TY1B-PR2P0C2J0 YPR011CYPR011C 981 nt20,13■□□□□ 0,81
TY1B-PR2P0C2J0 PTC2YER089C 1395 nt20,04■□□□□ 0,8
TY1B-PR2P0C2J0 BUD23YCR047C 828 nt19,93■□□□□ 0,78
TY1B-PR2P0C2J0 POA1YBR022W 534 nt19,93■□□□□ 0,78
TY1B-PR2P0C2J0 DSK2YMR276W 1122 nt19,92■□□□□ 0,78
TY1B-PR2P0C2J0 YBL100CYBL100C 315 nt19,86■□□□□ 0,77
TY1B-PR2P0C2J0 FIS1YIL065C 468 nt19,85■□□□□ 0,77
TY1B-PR2P0C2J0 LPX1YOR084W 1164 nt19,78■□□□□ 0,76
TY1B-PR2P0C2J0 YLR154C-GYLR154C-G 150 nt19,74■□□□□ 0,75
TY1B-PR2P0C2J0 UBX6YJL048C 1191 nt19,73■□□□□ 0,75
TY1B-PR2P0C2J0 YCH1YGR203W 447 nt19,72■□□□□ 0,75
TY1B-PR2P0C2J0 MRPL8YJL063C 717 nt19,7■□□□□ 0,74
TY1B-PR2P0C2J0 LSM3YLR438C-A 270 nt19,7■□□□□ 0,74
TY1B-PR2P0C2J0 SPP1YPL138C 1062 nt19,7■□□□□ 0,74
TY1B-PR2P0C2J0 RTG1YOL067C 534 nt19,68■□□□□ 0,74
TY1B-PR2P0C2J0 PHO4YFR034C 939 nt19,66■□□□□ 0,74
TY1B-PR2P0C2J0 FPR4YLR449W 1179 nt19,64■□□□□ 0,73
TY1B-PR2P0C2J0 NAB2YGL122C 1578 nt19,62■□□□□ 0,73
TY1B-PR2P0C2J0 IMP2'YIL154C 1041 nt19,58■□□□□ 0,73
Retrieved 100 of 7,029 protein–RNA pairs in 9,8 ms