RNA–Protein interactions for RNA: YCL069W

VBA3, Transcript of Permease of basic amino acids in the vacuolar membrane, yeastyeast

Gene VBA3, Length 1,377 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VBA3YCL069W MTC1P47018 478 aaKnown RBP16.9■□□□□ 0.3
VBA3YCL069W DRS1P32892 752 aaKnown RBP15.88■□□□□ 0.13
VBA3YCL069W INO80P53115 1489 aa15.62■□□□□ 0.09
VBA3YCL069W MON2P48563 1636 aaPredicted RBP15.61■□□□□ 0.09
VBA3YCL069W SGS1P35187 1447 aa15.55■□□□□ 0.08
VBA3YCL069W TCB3Q03640 1545 aaKnown RBP15.33■□□□□ 0.04
VBA3YCL069W TY1B-DR4Q07793 1604 aa15.23■□□□□ 0.03
VBA3YCL069W SWR1Q05471 1514 aa15.13■□□□□ 0.01
VBA3YCL069W FAP1P53971 965 aa15.11■□□□□ 0.01
VBA3YCL069W DNA2P38859 1522 aa14.91□□□□□ -0.02
VBA3YCL069W HSL1P34244 1518 aa14.83□□□□□ -0.04
VBA3YCL069W SPT6P23615 1451 aaKnown RBP14.8□□□□□ -0.04
VBA3YCL069W KOG1P38873 1557 aa14.74□□□□□ -0.05
VBA3YCL069W SPA2P23201 1466 aaKnown RBP14.7□□□□□ -0.06
VBA3YCL069W SSN2P38931 1420 aa14.59□□□□□ -0.07
VBA3YCL069W HIR3P47171 1648 aa14.57□□□□□ -0.08
VBA3YCL069W XRN1P22147 1528 aaKnown RBP14.39□□□□□ -0.11
VBA3YCL069W ECM5Q03214 1411 aa14.29□□□□□ -0.12
VBA3YCL069W BUD4P47136 1447 aa14.2□□□□□ -0.14
VBA3YCL069W THO2P53552 1597 aaKnown RBP14.2□□□□□ -0.14
VBA3YCL069W PRI1P10363 409 aa14.2□□□□□ -0.14
VBA3YCL069W PRY3P47033 881 aa14.19□□□□□ -0.14
VBA3YCL069W REV3P14284 1504 aa14.14□□□□□ -0.15
VBA3YCL069W AAD16Q02895 342 aa14.1□□□□□ -0.15
VBA3YCL069W RSE1Q04693 1361 aaKnown RBP14.06□□□□□ -0.16
VBA3YCL069W TAF2P23255 1407 aa14.03□□□□□ -0.16
VBA3YCL069W ISW2Q08773 1120 aa14.02□□□□□ -0.17
VBA3YCL069W MDS3P53094 1487 aa14□□□□□ -0.17
VBA3YCL069W ATG2P53855 1592 aa13.98□□□□□ -0.17
VBA3YCL069W SIN3P22579 1536 aa13.97□□□□□ -0.17
VBA3YCL069W PEP1P32319 1579 aa13.95□□□□□ -0.18
VBA3YCL069W DIP2Q12220 943 aaPredicted RBP13.9□□□□□ -0.18
VBA3YCL069W SSK2P53599 1579 aa13.89□□□□□ -0.19
VBA3YCL069W SKI3P17883 1432 aaKnown RBP13.88□□□□□ -0.19
VBA3YCL069W RPG1P38249 964 aaKnown RBP13.83□□□□□ -0.19
VBA3YCL069W ESP1Q03018 1630 aa13.83□□□□□ -0.2
VBA3YCL069W MYO2P19524 1574 aaKnown RBP13.67□□□□□ -0.22
VBA3YCL069W BPT1P14772 1559 aa13.62□□□□□ -0.23
VBA3YCL069W YPK9Q12697 1472 aa13.6□□□□□ -0.23
VBA3YCL069W UFD4P33202 1483 aa13.56□□□□□ -0.24
VBA3YCL069W SCC2Q04002 1493 aa13.56□□□□□ -0.24
VBA3YCL069W RPO31P04051 1460 aa13.48□□□□□ -0.25
VBA3YCL069W TSR3Q12094 313 aaKnown RBP13.41□□□□□ -0.26
VBA3YCL069W TY2B-LR1P0C2J3 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-FP0CX63 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-GR2P0CX64 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-CP25384 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-DR2Q03494 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY1B-DR1Q03855 1755 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-DR3Q07791 1770 aaKnown RBP13.41□□□□□ -0.26
VBA3YCL069W TY2B-OR1Q12113 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-DR1Q12472 1770 aa13.41□□□□□ -0.26
VBA3YCL069W TY2B-OR2Q12501 1770 aa13.41□□□□□ -0.26
VBA3YCL069W AVT3P36062 692 aa13.4□□□□□ -0.26
VBA3YCL069W YCF1P39109 1515 aaKnown RBP13.38□□□□□ -0.27
VBA3YCL069W POL1P13382 1468 aa13.38□□□□□ -0.27
VBA3YCL069W RKR1Q04781 1562 aa13.35□□□□□ -0.27
VBA3YCL069W HAA1Q12753 694 aaKnown RBP13.34□□□□□ -0.27
VBA3YCL069W YCK3P39962 524 aa13.33□□□□□ -0.27
VBA3YCL069W TOP2P06786 1428 aaKnown RBP13.33□□□□□ -0.28
VBA3YCL069W STU1P38198 1513 aa13.33□□□□□ -0.28
VBA3YCL069W RQC2Q12532 1038 aaKnown RBP13.32□□□□□ -0.28
VBA3YCL069W TY1B-BRQ12193 1756 aa13.28□□□□□ -0.28
VBA3YCL069W TY1B-GR3Q12316 1755 aa13.28□□□□□ -0.28
VBA3YCL069W TY1B-ORQ92393 1755 aa13.28□□□□□ -0.28
VBA3YCL069W TY1B-DR3Q99231 1755 aa13.27□□□□□ -0.28
VBA3YCL069W TY2B-BQ12491 1770 aa13.27□□□□□ -0.29
VBA3YCL069W BFR2Q06631 534 aaKnown RBP13.26□□□□□ -0.29
VBA3YCL069W CHD1P32657 1468 aa13.25□□□□□ -0.29
VBA3YCL069W CDC25P04821 1589 aa13.25□□□□□ -0.29
VBA3YCL069W YOR1P53049 1477 aa13.23□□□□□ -0.29
VBA3YCL069W TY1B-HO13535 1793 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-DR5P0C2I2 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-DR6P0C2I3 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-LR2P0C2I5 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-LR3P0C2I6 1755 aaKnown RBP13.2□□□□□ -0.3
VBA3YCL069W TY1B-PR1P0C2I9 1755 aaKnown RBP13.2□□□□□ -0.3
VBA3YCL069W TY1B-PR2P0C2J0 1756 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-PR3P0C2J1 1755 aaKnown RBP13.2□□□□□ -0.3
VBA3YCL069W TY1B-JR1P47098 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-ML2Q03434 1755 aaKnown RBP13.2□□□□□ -0.3
VBA3YCL069W TY1B-ER1Q03612 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-ML1Q04711 1755 aaKnown RBP13.2□□□□□ -0.3
VBA3YCL069W TY1B-GR2Q12269 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-OLQ12273 1755 aa13.2□□□□□ -0.3
VBA3YCL069W TY1B-PLQ12414 1755 aaKnown RBP13.2□□□□□ -0.3
VBA3YCL069W SMC4Q12267 1418 aa13.18□□□□□ -0.3
VBA3YCL069W ESC1Q03661 1658 aaKnown RBP13.16□□□□□ -0.3
VBA3YCL069W PAN1P32521 1480 aa13.15□□□□□ -0.3
VBA3YCL069W MMS22Q06164 1454 aa13.13□□□□□ -0.31
VBA3YCL069W DNF1P32660 1571 aa13.13□□□□□ -0.31
VBA3YCL069W YTA7P40340 1379 aa13.09□□□□□ -0.31
VBA3YCL069W SPP41P38904 1435 aa13.06□□□□□ -0.32
VBA3YCL069W RPA190P10964 1664 aaKnown RBP13.05□□□□□ -0.32
VBA3YCL069W MYO4P32492 1471 aa12.99□□□□□ -0.33
VBA3YCL069W TRM732Q03496 1420 aa12.98□□□□□ -0.33
VBA3YCL069W RPL17AP05740 184 aaKnown RBP12.96□□□□□ -0.33
VBA3YCL069W RPL17BP46990 184 aaKnown RBP12.96□□□□□ -0.33
VBA3YCL069W TY1B-JR2P47100 1755 aaKnown RBP12.96□□□□□ -0.33
VBA3YCL069W TY1B-ER2Q03619 1755 aa12.96□□□□□ -0.33
Retrieved 100 of 5,963 RNA–protein pairs in 14.1 ms