RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeastyeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM1YBR263W MTC1P47018 478 aaKnown RBP15.65■□□□□ 0.1
SHM1YBR263W DRS1P32892 752 aaKnown RBP14.37□□□□□ -0.11
SHM1YBR263W FAP1P53971 965 aa14.34□□□□□ -0.11
SHM1YBR263W PRY3P47033 881 aa13.5□□□□□ -0.25
SHM1YBR263W PRI1P10363 409 aa13.35□□□□□ -0.27
SHM1YBR263W AAD16Q02895 342 aa13.29□□□□□ -0.28
SHM1YBR263W ISW2Q08773 1120 aa13.02□□□□□ -0.33
SHM1YBR263W RPG1P38249 964 aaKnown RBP12.9□□□□□ -0.34
SHM1YBR263W YCK3P39962 524 aa12.78□□□□□ -0.36
SHM1YBR263W DIP2Q12220 943 aaPredicted RBP12.7□□□□□ -0.38
SHM1YBR263W HAA1Q12753 694 aaKnown RBP12.65□□□□□ -0.38
SHM1YBR263W TSR3Q12094 313 aaKnown RBP12.6□□□□□ -0.39
SHM1YBR263W RSE1Q04693 1361 aaKnown RBP12.34□□□□□ -0.43
SHM1YBR263W AVT3P36062 692 aa12.18□□□□□ -0.46
SHM1YBR263W MRPL32P25348 183 aa12.09□□□□□ -0.47
SHM1YBR263W RPL17AP05740 184 aaKnown RBP11.96□□□□□ -0.49
SHM1YBR263W RPL17BP46990 184 aaKnown RBP11.96□□□□□ -0.49
SHM1YBR263W REB1P21538 810 aa11.91□□□□□ -0.5
SHM1YBR263W BFR2Q06631 534 aaKnown RBP11.82□□□□□ -0.52
SHM1YBR263W YGL015CP33199 130 aa11.67□□□□□ -0.54
SHM1YBR263W CDC27P38042 758 aa11.47□□□□□ -0.57
SHM1YBR263W SPT21P35209 758 aa11.44□□□□□ -0.58
SHM1YBR263W YKR023WP36119 530 aaKnown RBP11.38□□□□□ -0.59
SHM1YBR263W UBP10P53874 792 aaPredicted RBP11.15□□□□□ -0.62
SHM1YBR263W TFC8Q12308 588 aa11.14□□□□□ -0.63
SHM1YBR263W HOP09932 586 aa11.13□□□□□ -0.63
SHM1YBR263W MAP2P38174 421 aaKnown RBP11.12□□□□□ -0.63
SHM1YBR263W DCD1P06773 312 aa11.09□□□□□ -0.63
SHM1YBR263W RIM101P33400 625 aa11□□□□□ -0.65
SHM1YBR263W SCY1P53009 804 aa10.86□□□□□ -0.67
SHM1YBR263W BUD31P25337 157 aaPredicted RBP10.81□□□□□ -0.68
SHM1YBR263W BCH2P36122 765 aa10.77□□□□□ -0.69
SHM1YBR263W MON2P48563 1636 aaPredicted RBP10.77□□□□□ -0.69
SHM1YBR263W INO80P53115 1489 aa10.74□□□□□ -0.69
SHM1YBR263W SLX5P32828 619 aaKnown RBP10.72□□□□□ -0.69
SHM1YBR263W TIF4632P39936 914 aaKnown RBP10.69□□□□□ -0.7
SHM1YBR263W TGL3P40308 642 aa10.67□□□□□ -0.7
SHM1YBR263W SGS1P35187 1447 aa10.67□□□□□ -0.7
SHM1YBR263W OXP1P28273 1286 aa10.62□□□□□ -0.71
SHM1YBR263W TCB3Q03640 1545 aaKnown RBP10.54□□□□□ -0.72
SHM1YBR263W EPS1P40557 701 aa10.48□□□□□ -0.73
SHM1YBR263W TY1B-DR4Q07793 1604 aa10.46□□□□□ -0.74
SHM1YBR263W BDF1P35817 686 aa10.44□□□□□ -0.74
SHM1YBR263W PTP3P40048 928 aa10.43□□□□□ -0.74
SHM1YBR263W YIL055CP40523 627 aaKnown RBP10.43□□□□□ -0.74
SHM1YBR263W SWR1Q05471 1514 aa10.4□□□□□ -0.74
SHM1YBR263W UBP9P39967 754 aa10.39□□□□□ -0.75
SHM1YBR263W RSM7P47150 247 aa10.3□□□□□ -0.76
SHM1YBR263W DNA2P38859 1522 aa10.27□□□□□ -0.77
SHM1YBR263W SIS1P25294 352 aaKnown RBP10.26□□□□□ -0.77
SHM1YBR263W YAH1Q12184 172 aaKnown RBP10.25□□□□□ -0.77
SHM1YBR263W BBC1P47068 1157 aa10.23□□□□□ -0.77
SHM1YBR263W AI2P03876 854 aa10.23□□□□□ -0.77
SHM1YBR263W TFA1P36100 482 aa10.22□□□□□ -0.77
SHM1YBR263W MST1P07236 462 aa10.21□□□□□ -0.78
SHM1YBR263W HSL1P34244 1518 aa10.19□□□□□ -0.78
SHM1YBR263W SPT6P23615 1451 aaKnown RBP10.16□□□□□ -0.78
SHM1YBR263W YOR238WQ08634 303 aa10.14□□□□□ -0.79
SHM1YBR263W KOG1P38873 1557 aa10.13□□□□□ -0.79
SHM1YBR263W NSR1P27476 414 aaKnown RBP RIP-Chip data10.12□□□□□ -0.79not detected
SHM1YBR263W YLR271WQ06152 274 aa10.09□□□□□ -0.79
SHM1YBR263W SPA2P23201 1466 aaKnown RBP10.06□□□□□ -0.8
SHM1YBR263W YBL029C-AQ3E756 94 aa10.05□□□□□ -0.8
SHM1YBR263W YAP5P40574 245 aa10.04□□□□□ -0.8
SHM1YBR263W SSN2P38931 1420 aa9.99□□□□□ -0.81
SHM1YBR263W HIR3P47171 1648 aa9.98□□□□□ -0.81
SHM1YBR263W PSD2P53037 1138 aaKnown RBP9.98□□□□□ -0.81
SHM1YBR263W VNX1P42839 908 aa9.95□□□□□ -0.82
SHM1YBR263W SSP1P38871 571 aa9.88□□□□□ -0.83
SHM1YBR263W WSC3Q12215 556 aa9.87□□□□□ -0.83
SHM1YBR263W XRN1P22147 1528 aaKnown RBP9.86□□□□□ -0.83
SHM1YBR263W SPP1Q03012 353 aa9.85□□□□□ -0.83
SHM1YBR263W MRM1P25270 412 aa9.84□□□□□ -0.83
SHM1YBR263W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.84□□□□□ -0.83not detected
SHM1YBR263W ECM5Q03214 1411 aa9.82□□□□□ -0.84
SHM1YBR263W GTT3P39996 337 aa9.8□□□□□ -0.84
SHM1YBR263W BUD4P47136 1447 aa9.78□□□□□ -0.84
SHM1YBR263W PIB1Q06651 286 aa9.77□□□□□ -0.85
SHM1YBR263W THO2P53552 1597 aaKnown RBP9.76□□□□□ -0.85
SHM1YBR263W TIF11P38912 153 aaKnown RBP9.75□□□□□ -0.85
SHM1YBR263W CST9Q06032 482 aa9.72□□□□□ -0.85
SHM1YBR263W REV3P14284 1504 aa9.69□□□□□ -0.86
SHM1YBR263W MGA2P40578 1113 aa9.68□□□□□ -0.86
SHM1YBR263W AIR2Q12476 344 aaKnown RBP9.66□□□□□ -0.86
SHM1YBR263W VPS29P38759 282 aa9.65□□□□□ -0.87
SHM1YBR263W FKH1P40466 484 aa9.65□□□□□ -0.87
SHM1YBR263W MDS3P53094 1487 aa9.64□□□□□ -0.87
SHM1YBR263W ULI1P43604 169 aa9.63□□□□□ -0.87
SHM1YBR263W YMR1P47147 688 aaKnown RBP RIP-Chip data9.62□□□□□ -0.87not detected
SHM1YBR263W RTG3P38165 486 aa9.61□□□□□ -0.87
SHM1YBR263W IOC2Q12072 812 aa9.61□□□□□ -0.87
SHM1YBR263W SIN3P22579 1536 aa9.6□□□□□ -0.87
SHM1YBR263W DBP1P24784 617 aaKnown RBP9.59□□□□□ -0.87
SHM1YBR263W LDB19Q12502 818 aa9.59□□□□□ -0.87
SHM1YBR263W PEP1P32319 1579 aa9.59□□□□□ -0.87
SHM1YBR263W ATG2P53855 1592 aa9.59□□□□□ -0.87
SHM1YBR263W TAF2P23255 1407 aa9.59□□□□□ -0.87
SHM1YBR263W MSB4Q12317 492 aa9.58□□□□□ -0.88
SHM1YBR263W YFR006WP43590 535 aa9.56□□□□□ -0.88
SHM1YBR263W YJL171CP46992 396 aa9.55□□□□□ -0.88
Retrieved 100 of 5,963 RNA–protein pairs in 29.7 ms