RNA–Protein interactions for RNA: ENST00000496423.1

ATG3-209, Transcript of autophagy related 3, humanhuman

TSL 5

Gene ATG3, Length 737 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-209ENST00000496423 NISCHQ9Y2I1 1504 aa30.09■■■□□ 2.41
ATG3-209ENST00000496423 ABCC9O60706 1549 aa28.21■■■□□ 2.11
ATG3-209ENST00000496423 CCDC180Q9P1Z9 1646 aa27.42■■□□□ 1.98
ATG3-209ENST00000496423 DNAJC5BQ9UF47 199 aa27.16■■□□□ 1.94
ATG3-209ENST00000496423 RB1CC1Q8TDY2 1594 aa26.56■■□□□ 1.84
ATG3-209ENST00000496423 NACADO15069 1562 aa26.16■■□□□ 1.78
ATG3-209ENST00000496423 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
ATG3-209ENST00000496423 DCAF8L2P0C7V8 631 aa25.94■■□□□ 1.74
ATG3-209ENST00000496423 UNC13AQ9UPW8 1703 aa25.84■■□□□ 1.73
ATG3-209ENST00000496423 DNAJC5Q9H3Z4 198 aa25.73■■□□□ 1.71
ATG3-209ENST00000496423 BICRAQ9NZM4 1560 aa25.66■■□□□ 1.7
ATG3-209ENST00000496423 CECR2Q9BXF3 1484 aa25.54■■□□□ 1.68
ATG3-209ENST00000496423 MYO15BQ96JP2 1530 aa25.49■■□□□ 1.67
ATG3-209ENST00000496423 AEBP2Q6ZN18 517 aaPredicted RBP25.46■■□□□ 1.67
ATG3-209ENST00000496423 CC2D2AQ9P2K1 1620 aa25.45■■□□□ 1.66
ATG3-209ENST00000496423 SHROOM4Q9ULL8 1493 aa25.39■■□□□ 1.65
ATG3-209ENST00000496423 EIF4G1Q04637 1599 aaKnown RBP25.18■■□□□ 1.62
ATG3-209ENST00000496423 CHIC1Q5VXU3 224 aa25.02■■□□□ 1.6
ATG3-209ENST00000496423 SCRIBQ14160 1630 aa24.86■■□□□ 1.57
ATG3-209ENST00000496423 DCAF1Q9Y4B6 1507 aa24.83■■□□□ 1.57
ATG3-209ENST00000496423 CUX2O14529 1486 aa24.75■■□□□ 1.55
ATG3-209ENST00000496423 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.55
ATG3-209ENST00000496423 ERCC6Q03468 1493 aa24.52■■□□□ 1.52
ATG3-209ENST00000496423 TRIM41Q8WV44 630 aa24.26■■□□□ 1.47
ATG3-209ENST00000496423 NCAPD3P42695 1498 aa24.13■■□□□ 1.45
ATG3-209ENST00000496423 NESP48681 1621 aa23.93■■□□□ 1.42
ATG3-209ENST00000496423 ATAD2BQ9ULI0 1458 aa23.89■■□□□ 1.42
ATG3-209ENST00000496423 THOC2Q8NI27 1593 aaKnown RBP23.87■■□□□ 1.41
ATG3-209ENST00000496423 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
ATG3-209ENST00000496423 HMGXB3Q12766 1538 aa23.85■■□□□ 1.41
ATG3-209ENST00000496423 LAMC3Q9Y6N6 1575 aa23.76■■□□□ 1.39
ATG3-209ENST00000496423 PDS5BQ9NTI5 1447 aa23.7■■□□□ 1.38
ATG3-209ENST00000496423 BAZ1BQ9UIG0 1483 aaKnown RBP23.67■■□□□ 1.38
ATG3-209ENST00000496423 SMARCA4P51532 1647 aa23.65■■□□□ 1.38
ATG3-209ENST00000496423 KIF21AQ7Z4S6 1674 aa23.64■■□□□ 1.38
ATG3-209ENST00000496423 OSCARQ8IYS5 282 aa23.57■■□□□ 1.36
ATG3-209ENST00000496423 BAZ1AQ9NRL2 1556 aaPredicted RBP23.5■■□□□ 1.35
ATG3-209ENST00000496423 MRC2Q9UBG0 1479 aa23.46■■□□□ 1.35
ATG3-209ENST00000496423 PEG3Q9GZU2 1588 aa23.42■■□□□ 1.34
ATG3-209ENST00000496423 WDR62O43379 1518 aa23.39■■□□□ 1.34
ATG3-209ENST00000496423 CADPSQ9ULU8 1353 aa23.38■■□□□ 1.33
ATG3-209ENST00000496423 CEP164Q9UPV0 1460 aa23.22■■□□□ 1.31
ATG3-209ENST00000496423 RIMBP3CA6NJZ7 1639 aa23.2■■□□□ 1.3
ATG3-209ENST00000496423 RIMBP3BA6NNM3 1639 aa23.2■■□□□ 1.3
ATG3-209ENST00000496423 RIMBP3Q9UFD9 1639 aa23.2■■□□□ 1.3
ATG3-209ENST00000496423 TRHP20396 242 aaPredicted RBP23.13■■□□□ 1.29
ATG3-209ENST00000496423 MROH2BQ7Z745 1585 aa23.12■■□□□ 1.29
ATG3-209ENST00000496423 FANCD2Q9BXW9 1451 aa23.09■■□□□ 1.29
ATG3-209ENST00000496423 ARHGEF11O15085 1522 aa23.03■■□□□ 1.28
ATG3-209ENST00000496423 CYB5RLQ6IPT4 315 aa23.02■■□□□ 1.28
ATG3-209ENST00000496423 CFTRP13569 1480 aa22.89■■□□□ 1.25
ATG3-209ENST00000496423 URB2Q14146 1524 aaKnown RBP22.88■■□□□ 1.25
ATG3-209ENST00000496423 WIZO95785 1651 aa22.83■■□□□ 1.24
ATG3-209ENST00000496423 IFT140Q96RY7 1462 aa22.79■■□□□ 1.24
ATG3-209ENST00000496423 ZNF608Q9ULD9 1512 aaPredicted RBP22.73■■□□□ 1.23
ATG3-209ENST00000496423 ARAP1Q96P48 1450 aa22.71■■□□□ 1.23
ATG3-209ENST00000496423 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
ATG3-209ENST00000496423 FBLN2P98095 1184 aa22.64■■□□□ 1.21
ATG3-209ENST00000496423 PRDM2Q13029 1718 aa22.62■■□□□ 1.21
ATG3-209ENST00000496423 CHD1O14646 1710 aa22.62■■□□□ 1.21
ATG3-209ENST00000496423 EIF4G3O43432 1585 aaKnown RBP22.59■■□□□ 1.21
ATG3-209ENST00000496423 ABCC8Q09428 1581 aa22.57■■□□□ 1.2
ATG3-209ENST00000496423 TOPBP1Q92547 1522 aa22.52■■□□□ 1.2
ATG3-209ENST00000496423 TOP2AP11388 1531 aaKnown RBP22.5■■□□□ 1.19
ATG3-209ENST00000496423 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.19
ATG3-209ENST00000496423 DNMBPQ6XZF7 1577 aa22.39■■□□□ 1.18
ATG3-209ENST00000496423 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
ATG3-209ENST00000496423 CHMP7Q8WUX9 453 aaPredicted RBP22.35■■□□□ 1.17
ATG3-209ENST00000496423 SYNJ1O43426 1573 aa22.33■■□□□ 1.16
ATG3-209ENST00000496423 CLASP1Q7Z460 1538 aa22.3■■□□□ 1.16
ATG3-209ENST00000496423 CCDC88BA6NC98 1476 aa22.25■■□□□ 1.15
ATG3-209ENST00000496423 POLA1P09884 1462 aaPredicted RBP22.22■■□□□ 1.15
ATG3-209ENST00000496423 TDRD9Q8NDG6 1382 aaKnown RBP22.22■■□□□ 1.15
ATG3-209ENST00000496423 SNAPC4Q5SXM2 1469 aa22.21■■□□□ 1.15
ATG3-209ENST00000496423 SOGA1O94964 1423 aa22.2■■□□□ 1.14
ATG3-209ENST00000496423 GAPVD1Q14C86 1478 aa22.2■■□□□ 1.14
ATG3-209ENST00000496423 WDR97A6NE52 1622 aa22.19■■□□□ 1.14
ATG3-209ENST00000496423 MAGI1Q96QZ7 1491 aaPredicted RBP22.18■■□□□ 1.14
ATG3-209ENST00000496423 RAD54L2Q9Y4B4 1467 aa22.15■■□□□ 1.14
ATG3-209ENST00000496423 PHF23Q9BUL5 403 aaPredicted RBP22.13■■□□□ 1.13
ATG3-209ENST00000496423 SYNJ2O15056 1496 aa22.11■■□□□ 1.13
ATG3-209ENST00000496423 ILDR1Q86SU0 546 aaPredicted RBP22.11■■□□□ 1.13
ATG3-209ENST00000496423 GRIN2BQ13224 1484 aa22.09■■□□□ 1.13
ATG3-209ENST00000496423 FGD5Q6ZNL6 1462 aa21.97■■□□□ 1.11
ATG3-209ENST00000496423 KIF13AQ9H1H9 1805 aa21.91■■□□□ 1.1
ATG3-209ENST00000496423 PBRM1Q86U86 1689 aa21.9■■□□□ 1.1
ATG3-209ENST00000496423 KDM4FA0A1W2PPD8 638 aa21.83■■□□□ 1.09
ATG3-209ENST00000496423 ERCC6L2Q5T890 1561 aa21.82■■□□□ 1.08
ATG3-209ENST00000496423 NPM1P06748 294 aaKnown RBP eCLIP21.82■■□□□ 1.08
ATG3-209ENST00000496423 FAM69CQ0P6D2 419 aa21.82■■□□□ 1.08
ATG3-209ENST00000496423 CEP170Q5SW79 1584 aa21.81■■□□□ 1.08
ATG3-209ENST00000496423 CUX1P39880 1505 aa21.78■■□□□ 1.08
ATG3-209ENST00000496423 GRIN2AQ12879 1464 aa21.77■■□□□ 1.07
ATG3-209ENST00000496423 ABCC10Q5T3U5 1492 aa21.72■■□□□ 1.07
ATG3-209ENST00000496423 KDM6BO15054 1643 aa21.72■■□□□ 1.07
ATG3-209ENST00000496423 NUP160Q12769 1436 aa21.7■■□□□ 1.06
ATG3-209ENST00000496423 ABCA10Q8WWZ4 1543 aa21.7■■□□□ 1.06
ATG3-209ENST00000496423 SHROOM2Q13796 1616 aa21.69■■□□□ 1.06
ATG3-209ENST00000496423 ABCA5Q8WWZ7 1642 aa21.69■■□□□ 1.06
ATG3-209ENST00000496423 PRG4Q92954 1404 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 839.6 ms