RNA–Protein interactions for RNA: ENST00000472116.1

CDHR3-209, Transcript of cadherin related family member 3, humanhuman

TSL 2

Gene CDHR3, Length 993 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-209ENST00000472116 NISCHQ9Y2I1 1504 aa26.52■■□□□ 1.84
CDHR3-209ENST00000472116 ABCC9O60706 1549 aa24.95■■□□□ 1.58
CDHR3-209ENST00000472116 CCDC180Q9P1Z9 1646 aa24.27■■□□□ 1.48
CDHR3-209ENST00000472116 DNAJC5BQ9UF47 199 aa23.95■■□□□ 1.42
CDHR3-209ENST00000472116 AEBP2Q6ZN18 517 aaPredicted RBP23.87■■□□□ 1.41
CDHR3-209ENST00000472116 RB1CC1Q8TDY2 1594 aa23.47■■□□□ 1.35
CDHR3-209ENST00000472116 NACADO15069 1562 aa23.09■■□□□ 1.29
CDHR3-209ENST00000472116 PABPN1Q86U42 306 aaKnown RBP eCLIP23.05■■□□□ 1.28
CDHR3-209ENST00000472116 UNC13AQ9UPW8 1703 aa22.96■■□□□ 1.27
CDHR3-209ENST00000472116 DCAF8L2P0C7V8 631 aa22.81■■□□□ 1.24
CDHR3-209ENST00000472116 BICRAQ9NZM4 1560 aa22.69■■□□□ 1.22
CDHR3-209ENST00000472116 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
CDHR3-209ENST00000472116 CECR2Q9BXF3 1484 aa22.57■■□□□ 1.2
CDHR3-209ENST00000472116 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
CDHR3-209ENST00000472116 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
CDHR3-209ENST00000472116 SHROOM4Q9ULL8 1493 aa22.41■■□□□ 1.18
CDHR3-209ENST00000472116 CHIC1Q5VXU3 224 aa22.39■■□□□ 1.17
CDHR3-209ENST00000472116 EIF4G1Q04637 1599 aaKnown RBP22.27■■□□□ 1.16
CDHR3-209ENST00000472116 SCRIBQ14160 1630 aa22.02■■□□□ 1.11
CDHR3-209ENST00000472116 DCAF1Q9Y4B6 1507 aa21.87■■□□□ 1.09
CDHR3-209ENST00000472116 CUX2O14529 1486 aa21.87■■□□□ 1.09
CDHR3-209ENST00000472116 ZCCHC6Q5VYS8 1495 aaKnown RBP21.8■■□□□ 1.08
CDHR3-209ENST00000472116 ERCC6Q03468 1493 aa21.68■■□□□ 1.06
CDHR3-209ENST00000472116 TRIM41Q8WV44 630 aa21.44■■□□□ 1.02
CDHR3-209ENST00000472116 NCAPD3P42695 1498 aa21.25■□□□□ 0.99
CDHR3-209ENST00000472116 NESP48681 1621 aa21.16■□□□□ 0.98
CDHR3-209ENST00000472116 THOC2Q8NI27 1593 aaKnown RBP21.16■□□□□ 0.98
CDHR3-209ENST00000472116 ATAD2BQ9ULI0 1458 aa21.07■□□□□ 0.96
CDHR3-209ENST00000472116 HMGXB3Q12766 1538 aa21.07■□□□□ 0.96
CDHR3-209ENST00000472116 SMARCA2P51531 1590 aa21.06■□□□□ 0.96
CDHR3-209ENST00000472116 LAMC3Q9Y6N6 1575 aa20.98■□□□□ 0.95
CDHR3-209ENST00000472116 KIF21AQ7Z4S6 1674 aa20.98■□□□□ 0.95
CDHR3-209ENST00000472116 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
CDHR3-209ENST00000472116 BAZ1BQ9UIG0 1483 aaKnown RBP20.89■□□□□ 0.94
CDHR3-209ENST00000472116 PDS5BQ9NTI5 1447 aa20.87■□□□□ 0.93
CDHR3-209ENST00000472116 BAZ1AQ9NRL2 1556 aaPredicted RBP20.84■□□□□ 0.93
CDHR3-209ENST00000472116 MRC2Q9UBG0 1479 aa20.73■□□□□ 0.91
CDHR3-209ENST00000472116 OSCARQ8IYS5 282 aa20.72■□□□□ 0.91
CDHR3-209ENST00000472116 WDR62O43379 1518 aa20.69■□□□□ 0.9
CDHR3-209ENST00000472116 PEG3Q9GZU2 1588 aa20.68■□□□□ 0.9
CDHR3-209ENST00000472116 CADPSQ9ULU8 1353 aa20.57■□□□□ 0.88
CDHR3-209ENST00000472116 RIMBP3CA6NJZ7 1639 aa20.56■□□□□ 0.88
CDHR3-209ENST00000472116 RIMBP3BA6NNM3 1639 aa20.56■□□□□ 0.88
CDHR3-209ENST00000472116 RIMBP3Q9UFD9 1639 aa20.56■□□□□ 0.88
CDHR3-209ENST00000472116 CEP164Q9UPV0 1460 aa20.51■□□□□ 0.87
CDHR3-209ENST00000472116 SENP3Q9H4L4 574 aaPredicted RBP20.47■□□□□ 0.87
CDHR3-209ENST00000472116 MROH2BQ7Z745 1585 aa20.4■□□□□ 0.86
CDHR3-209ENST00000472116 TRHP20396 242 aaPredicted RBP20.39■□□□□ 0.85
CDHR3-209ENST00000472116 ARHGEF11O15085 1522 aa20.38■□□□□ 0.85
CDHR3-209ENST00000472116 FANCD2Q9BXW9 1451 aa20.37■□□□□ 0.85
CDHR3-209ENST00000472116 CYB5RLQ6IPT4 315 aa20.28■□□□□ 0.84
CDHR3-209ENST00000472116 URB2Q14146 1524 aaKnown RBP20.22■□□□□ 0.83
CDHR3-209ENST00000472116 WIZO95785 1651 aa20.18■□□□□ 0.82
CDHR3-209ENST00000472116 CFTRP13569 1480 aa20.17■□□□□ 0.82
CDHR3-209ENST00000472116 PHF23Q9BUL5 403 aaPredicted RBP20.16■□□□□ 0.82
CDHR3-209ENST00000472116 IFT140Q96RY7 1462 aa20.11■□□□□ 0.81
CDHR3-209ENST00000472116 PRDM2Q13029 1718 aa20.1■□□□□ 0.81
CDHR3-209ENST00000472116 ARAP1Q96P48 1450 aa20.09■□□□□ 0.81
CDHR3-209ENST00000472116 ZNF608Q9ULD9 1512 aaPredicted RBP20.08■□□□□ 0.81
CDHR3-209ENST00000472116 CHD1O14646 1710 aa20.08■□□□□ 0.81
CDHR3-209ENST00000472116 EIF4G3O43432 1585 aaKnown RBP20.03■□□□□ 0.8
CDHR3-209ENST00000472116 RSF1Q96T23 1441 aaPredicted RBP20.01■□□□□ 0.79
CDHR3-209ENST00000472116 FBLN2P98095 1184 aa19.94■□□□□ 0.78
CDHR3-209ENST00000472116 TOPBP1Q92547 1522 aa19.89■□□□□ 0.77
CDHR3-209ENST00000472116 TOP2AP11388 1531 aaKnown RBP19.87■□□□□ 0.77
CDHR3-209ENST00000472116 ABCC8Q09428 1581 aa19.87■□□□□ 0.77
CDHR3-209ENST00000472116 AQRO60306 1485 aaKnown RBP eCLIP19.81■□□□□ 0.76
CDHR3-209ENST00000472116 DNMBPQ6XZF7 1577 aa19.78■□□□□ 0.76
CDHR3-209ENST00000472116 TARBP1Q13395 1621 aaKnown RBP19.77■□□□□ 0.76
CDHR3-209ENST00000472116 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
CDHR3-209ENST00000472116 CLASP1Q7Z460 1538 aa19.72■□□□□ 0.75
CDHR3-209ENST00000472116 CHMP7Q8WUX9 453 aaPredicted RBP19.65■□□□□ 0.74
CDHR3-209ENST00000472116 SNAPC4Q5SXM2 1469 aa19.63■□□□□ 0.73
CDHR3-209ENST00000472116 POLA1P09884 1462 aaPredicted RBP19.62■□□□□ 0.73
CDHR3-209ENST00000472116 GAPVD1Q14C86 1478 aa19.6■□□□□ 0.73
CDHR3-209ENST00000472116 WDR97A6NE52 1622 aa19.6■□□□□ 0.73
CDHR3-209ENST00000472116 CCDC88BA6NC98 1476 aa19.6■□□□□ 0.73
CDHR3-209ENST00000472116 MAGI1Q96QZ7 1491 aaPredicted RBP19.57■□□□□ 0.72
CDHR3-209ENST00000472116 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
CDHR3-209ENST00000472116 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
CDHR3-209ENST00000472116 ILDR1Q86SU0 546 aaPredicted RBP19.54■□□□□ 0.72
CDHR3-209ENST00000472116 SOGA1O94964 1423 aa19.53■□□□□ 0.72
CDHR3-209ENST00000472116 SYNJ2O15056 1496 aa19.51■□□□□ 0.71
CDHR3-209ENST00000472116 GRIN2BQ13224 1484 aa19.48■□□□□ 0.71
CDHR3-209ENST00000472116 KIF13AQ9H1H9 1805 aa19.46■□□□□ 0.71
CDHR3-209ENST00000472116 PBRM1Q86U86 1689 aa19.43■□□□□ 0.7
CDHR3-209ENST00000472116 FGD5Q6ZNL6 1462 aa19.41■□□□□ 0.7
CDHR3-209ENST00000472116 ERCC6L2Q5T890 1561 aa19.32■□□□□ 0.68
CDHR3-209ENST00000472116 CEP170Q5SW79 1584 aa19.27■□□□□ 0.68
CDHR3-209ENST00000472116 KDM4FA0A1W2PPD8 638 aa19.24■□□□□ 0.67
CDHR3-209ENST00000472116 KDM6BO15054 1643 aa19.24■□□□□ 0.67
CDHR3-209ENST00000472116 CUX1P39880 1505 aa19.23■□□□□ 0.67
CDHR3-209ENST00000472116 GRIN2AQ12879 1464 aa19.22■□□□□ 0.67
CDHR3-209ENST00000472116 FAM69CQ0P6D2 419 aa19.21■□□□□ 0.67
CDHR3-209ENST00000472116 ABCA5Q8WWZ7 1642 aa19.2■□□□□ 0.66
CDHR3-209ENST00000472116 SHROOM2Q13796 1616 aa19.19■□□□□ 0.66
CDHR3-209ENST00000472116 ABCC10Q5T3U5 1492 aa19.17■□□□□ 0.66
CDHR3-209ENST00000472116 NPM1P06748 294 aaKnown RBP eCLIP19.17■□□□□ 0.66
CDHR3-209ENST00000472116 TSPOAP1O95153 1857 aa19.17■□□□□ 0.66
CDHR3-209ENST00000472116 NUP160Q12769 1436 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms