RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM6YDL077C TY1B-OLQ12273 1755 aa1.21□□□□□ -2.22
VAM6YDL077C TY1B-PLQ12414 1755 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C LYS2P07702 1392 aa1.21□□□□□ -2.22
VAM6YDL077C BUD3P25558 1636 aa1.21□□□□□ -2.22
VAM6YDL077C YMR085WP0CF18 432 aa1.21□□□□□ -2.22
VAM6YDL077C CDC3P32457 520 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C RPN12P32496 274 aa1.21□□□□□ -2.22
VAM6YDL077C NAB2P32505 525 aaKnown RBP RIP-Chip data1.21□□□□□ -2.22not detected
VAM6YDL077C SLA1P32790 1244 aa1.21□□□□□ -2.22
VAM6YDL077C NIP100P33420 868 aa1.21□□□□□ -2.22
VAM6YDL077C TFC3P34111 1160 aa1.21□□□□□ -2.22
VAM6YDL077C TIF3P34167 436 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C MUD2P36084 527 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C UIP5P36137 443 aa1.21□□□□□ -2.22
VAM6YDL077C SKN7P38889 622 aa1.21□□□□□ -2.22
VAM6YDL077C TFG2P41896 400 aaPredicted RBP1.21□□□□□ -2.22
VAM6YDL077C MSN5P52918 1224 aa1.21□□□□□ -2.22
VAM6YDL077C ITC1P53125 1264 aa1.21□□□□□ -2.22
VAM6YDL077C NOP7P53261 605 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C PDS5Q04264 1277 aa1.21□□□□□ -2.22
VAM6YDL077C EIS1Q05050 843 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C TSR1Q07381 788 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C RVB2Q12464 471 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C CHC1P22137 1653 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C RTC1Q08281 1341 aa1.21□□□□□ -2.22
VAM6YDL077C RPB2P08518 1224 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C SSA2P10592 639 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C ADE2P21264 571 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C HSP104P31539 908 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C YSW1P38280 609 aa1.21□□□□□ -2.22
VAM6YDL077C OCA5P38738 679 aa1.21□□□□□ -2.22
VAM6YDL077C YAP3P38749 330 aa1.21□□□□□ -2.22
VAM6YDL077C CIC1P38779 376 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C SAP1P39955 897 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C YIL001WP40560 513 aa1.21□□□□□ -2.22
VAM6YDL077C YRB1P41920 201 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C ILM1P47155 203 aa1.21□□□□□ -2.22
VAM6YDL077C RTS3P53289 263 aa1.21□□□□□ -2.22
VAM6YDL077C SPO19Q03029 223 aa1.21□□□□□ -2.22
VAM6YDL077C SRL4Q03085 281 aa1.21□□□□□ -2.22
VAM6YDL077C PKH1Q03407 766 aa1.21□□□□□ -2.22
VAM6YDL077C YDR341CQ05506 607 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C PSH1Q12161 406 aa1.21□□□□□ -2.22
VAM6YDL077C BUG1Q12191 341 aa1.21□□□□□ -2.22
VAM6YDL077C WTM2Q12206 467 aa1.21□□□□□ -2.22
VAM6YDL077C NFI1Q12216 726 aa1.21□□□□□ -2.22
VAM6YDL077C LSO1Q3E827 93 aa1.21□□□□□ -2.22
VAM6YDL077C NUP188P52593 1655 aaKnown RBP1.21□□□□□ -2.22
VAM6YDL077C GPM1P00950 247 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C TRL1P09880 827 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C YEF3P16521 1044 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C BUD14P27637 709 aa1.2□□□□□ -2.22
VAM6YDL077C BRF1P29056 596 aa1.2□□□□□ -2.22
VAM6YDL077C RAD5P32849 1169 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C DMA1P38823 416 aa1.2□□□□□ -2.22
VAM6YDL077C SMC2P38989 1170 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C IES5P40060 125 aa1.2□□□□□ -2.22
VAM6YDL077C SET2P46995 733 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C IST1P53843 298 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C ARP5P53946 755 aa1.2□□□□□ -2.22
VAM6YDL077C KRE28Q04431 385 aa1.2□□□□□ -2.22
VAM6YDL077C RSA3Q05942 220 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C MRD1Q06106 887 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C PCL8Q08966 492 aa1.2□□□□□ -2.22
VAM6YDL077C SFI1Q12369 946 aa1.2□□□□□ -2.22
VAM6YDL077C NKP1Q12493 238 aa1.2□□□□□ -2.22
VAM6YDL077C VMR1P38735 1592 aa1.2□□□□□ -2.22
VAM6YDL077C VTH1P40438 1549 aa1.2□□□□□ -2.22
VAM6YDL077C RPS3P05750 240 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C CYC8P14922 966 aa1.2□□□□□ -2.22
VAM6YDL077C HSP30P25619 332 aa1.2□□□□□ -2.22
VAM6YDL077C DPB3P27344 201 aa1.2□□□□□ -2.22
VAM6YDL077C KTR1P27810 393 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C PUP2P32379 260 aa1.2□□□□□ -2.22
VAM6YDL077C NIP1P32497 812 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C MIC60P36112 540 aa1.2□□□□□ -2.22
VAM6YDL077C RFC1P38630 861 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C HXT6P39003 570 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C HXT7P39004 570 aa1.2□□□□□ -2.22
VAM6YDL077C ATG3P40344 310 aa1.2□□□□□ -2.22
VAM6YDL077C DOT5P40553 215 aa1.2□□□□□ -2.22
VAM6YDL077C CIR1P42940 261 aa1.2□□□□□ -2.22
VAM6YDL077C MET12P46151 657 aa1.2□□□□□ -2.22
VAM6YDL077C TAF1P46677 1066 aa1.2□□□□□ -2.22
VAM6YDL077C MRX12P47084 519 aa1.2□□□□□ -2.22
VAM6YDL077C POL32P47110 350 aa1.2□□□□□ -2.22
VAM6YDL077C HOP2P53187 214 aa1.2□□□□□ -2.22
VAM6YDL077C ALF1P53904 254 aa1.2□□□□□ -2.22
VAM6YDL077C NAF1P53919 492 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C CTF4Q01454 927 aa1.2□□□□□ -2.22
VAM6YDL077C FMP30Q02883 468 aa1.2□□□□□ -2.22
VAM6YDL077C YML108WQ03759 105 aa1.2□□□□□ -2.22
VAM6YDL077C YMR111CQ04461 462 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C ERB1Q04660 807 aaKnown RBP1.2□□□□□ -2.22
VAM6YDL077C STE23Q06010 1027 aa1.2□□□□□ -2.22
VAM6YDL077C DNL4Q08387 944 aaPredicted RBP1.2□□□□□ -2.22
VAM6YDL077C AIM7Q12156 149 aa1.2□□□□□ -2.22
VAM6YDL077C HSP42Q12329 375 aa1.2□□□□□ -2.22
VAM6YDL077C SCM3Q12334 223 aa1.2□□□□□ -2.22
VAM6YDL077C TY4A-HQ6Q5P6 413 aa1.2□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms