RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM6YDL077C FAP1P53971 965 aa3.38□□□□□ -1.87
VAM6YDL077C PRY3P47033 881 aa3.14□□□□□ -1.91
VAM6YDL077C MTC1P47018 478 aaKnown RBP2.92□□□□□ -1.94
VAM6YDL077C HAA1Q12753 694 aaKnown RBP2.78□□□□□ -1.96
VAM6YDL077C SIS1P25294 352 aaKnown RBP2.66□□□□□ -1.98
VAM6YDL077C AAD16Q02895 342 aa2.64□□□□□ -1.99
VAM6YDL077C YCK3P39962 524 aa2.59□□□□□ -2
VAM6YDL077C DRS1P32892 752 aaKnown RBP2.57□□□□□ -2
VAM6YDL077C BUD31P25337 157 aaPredicted RBP2.56□□□□□ -2
VAM6YDL077C PRI1P10363 409 aa2.54□□□□□ -2
VAM6YDL077C ISW2Q08773 1120 aa2.5□□□□□ -2.01
VAM6YDL077C RPG1P38249 964 aaKnown RBP2.45□□□□□ -2.02
VAM6YDL077C YGL015CP33199 130 aa2.43□□□□□ -2.02
VAM6YDL077C TSR3Q12094 313 aaKnown RBP2.42□□□□□ -2.02
VAM6YDL077C MRPL32P25348 183 aa2.37□□□□□ -2.03
VAM6YDL077C RSE1Q04693 1361 aaKnown RBP2.3□□□□□ -2.04
VAM6YDL077C DIP2Q12220 943 aaPredicted RBP2.3□□□□□ -2.04
VAM6YDL077C REB1P21538 810 aa2.27□□□□□ -2.05
VAM6YDL077C UBP9P39967 754 aa2.26□□□□□ -2.05
VAM6YDL077C RPL17AP05740 184 aaKnown RBP2.24□□□□□ -2.05
VAM6YDL077C RPL17BP46990 184 aaKnown RBP2.24□□□□□ -2.05
VAM6YDL077C CDC27P38042 758 aa2.15□□□□□ -2.07
VAM6YDL077C UBP10P53874 792 aaPredicted RBP2.15□□□□□ -2.07
VAM6YDL077C AVT3P36062 692 aa2.12□□□□□ -2.07
VAM6YDL077C MAP2P38174 421 aaKnown RBP2.12□□□□□ -2.07
VAM6YDL077C TIF4632P39936 914 aaKnown RBP2.1□□□□□ -2.07
VAM6YDL077C YKR023WP36119 530 aaKnown RBP2.08□□□□□ -2.08
VAM6YDL077C HOP09932 586 aa2.07□□□□□ -2.08
VAM6YDL077C SLX5P32828 619 aaKnown RBP2.06□□□□□ -2.08
VAM6YDL077C SCY1P53009 804 aa2.06□□□□□ -2.08
VAM6YDL077C BFR2Q06631 534 aaKnown RBP2.06□□□□□ -2.08
VAM6YDL077C SPT21P35209 758 aa2.06□□□□□ -2.08
VAM6YDL077C TFC8Q12308 588 aa2.06□□□□□ -2.08
VAM6YDL077C DCD1P06773 312 aa2.05□□□□□ -2.08
VAM6YDL077C TGL3P40308 642 aa2.04□□□□□ -2.08
VAM6YDL077C YJL171CP46992 396 aa2.04□□□□□ -2.08
VAM6YDL077C BCH2P36122 765 aa1.98□□□□□ -2.09
VAM6YDL077C RIM101P33400 625 aa1.96□□□□□ -2.1
VAM6YDL077C YOR238WQ08634 303 aa1.95□□□□□ -2.1
VAM6YDL077C YIL055CP40523 627 aaKnown RBP1.94□□□□□ -2.1
VAM6YDL077C YBL029C-AQ3E756 94 aa1.94□□□□□ -2.1
VAM6YDL077C PTP3P40048 928 aa1.93□□□□□ -2.1
VAM6YDL077C EPS1P40557 701 aa1.93□□□□□ -2.1
VAM6YDL077C RGA2Q06407 1009 aa1.93□□□□□ -2.1
VAM6YDL077C BDF1P35817 686 aa1.92□□□□□ -2.1
VAM6YDL077C SPP1Q03012 353 aa1.92□□□□□ -2.1
VAM6YDL077C GTT3P39996 337 aa1.92□□□□□ -2.1
VAM6YDL077C BBC1P47068 1157 aa1.92□□□□□ -2.1
VAM6YDL077C WSC3Q12215 556 aa1.91□□□□□ -2.1
VAM6YDL077C YAP5P40574 245 aa1.91□□□□□ -2.1
VAM6YDL077C MST1P07236 462 aa1.9□□□□□ -2.1
VAM6YDL077C VNX1P42839 908 aa1.9□□□□□ -2.11
VAM6YDL077C NSR1P27476 414 aaKnown RBP RIP-Chip data1.88□□□□□ -2.11not detected
VAM6YDL077C OXP1P28273 1286 aa1.88□□□□□ -2.11
VAM6YDL077C RSM7P47150 247 aa1.88□□□□□ -2.11
VAM6YDL077C TIF11P38912 153 aaKnown RBP1.87□□□□□ -2.11
VAM6YDL077C YAH1Q12184 172 aaKnown RBP1.86□□□□□ -2.11
VAM6YDL077C AI2P03876 854 aa1.86□□□□□ -2.11
VAM6YDL077C BMT6Q12291 365 aa1.86□□□□□ -2.11
VAM6YDL077C FKH1P40466 484 aa1.86□□□□□ -2.11
VAM6YDL077C AIR2Q12476 344 aaKnown RBP1.85□□□□□ -2.11
VAM6YDL077C ULI1P43604 169 aa1.85□□□□□ -2.11
VAM6YDL077C LDB19Q12502 818 aa1.84□□□□□ -2.12
VAM6YDL077C EAP1P36041 632 aaKnown RBP1.83□□□□□ -2.12
VAM6YDL077C PIB1Q06651 286 aa1.83□□□□□ -2.12
VAM6YDL077C TFG1P41895 735 aaPredicted RBP1.82□□□□□ -2.12
VAM6YDL077C MSB4Q12317 492 aa1.82□□□□□ -2.12
VAM6YDL077C RTG1P32607 177 aa1.8□□□□□ -2.12
VAM6YDL077C NCR1Q12200 1170 aa1.8□□□□□ -2.12
VAM6YDL077C SET4P42948 560 aa1.8□□□□□ -2.12
VAM6YDL077C IOC2Q12072 812 aa1.8□□□□□ -2.12
VAM6YDL077C TFA1P36100 482 aa1.79□□□□□ -2.12
VAM6YDL077C MRM1P25270 412 aa1.79□□□□□ -2.12
VAM6YDL077C ARP8Q12386 881 aaKnown RBP RIP-Chip data1.79□□□□□ -2.12 RIP-Chip
VAM6YDL077C YNL035CP53962 389 aaKnown RBP1.78□□□□□ -2.12
VAM6YDL077C YOL036WQ08206 761 aa1.78□□□□□ -2.12
VAM6YDL077C TRP5P00931 707 aaKnown RBP1.77□□□□□ -2.13
VAM6YDL077C SEC61P32915 480 aa1.77□□□□□ -2.13
VAM6YDL077C YLR271WQ06152 274 aa1.77□□□□□ -2.13
VAM6YDL077C YMR1P47147 688 aaKnown RBP RIP-Chip data1.76□□□□□ -2.13not detected
VAM6YDL077C PSD2P53037 1138 aaKnown RBP1.76□□□□□ -2.13
VAM6YDL077C DBP1P24784 617 aaKnown RBP1.76□□□□□ -2.13
VAM6YDL077C SAP30P38429 201 aa1.75□□□□□ -2.13
VAM6YDL077C BCK2P33306 851 aa1.75□□□□□ -2.13
VAM6YDL077C RGA1P39083 1007 aa1.75□□□□□ -2.13
VAM6YDL077C ABP1P15891 592 aaKnown RBP1.75□□□□□ -2.13
VAM6YDL077C YFR006WP43590 535 aa1.75□□□□□ -2.13
VAM6YDL077C JIP4Q03361 876 aa1.75□□□□□ -2.13
VAM6YDL077C VMA1P17255 1071 aaKnown RBP1.74□□□□□ -2.13
VAM6YDL077C RTG3P38165 486 aa1.74□□□□□ -2.13
VAM6YDL077C YDL129WQ07555 291 aa1.74□□□□□ -2.13
VAM6YDL077C CHL1P22516 861 aaPredicted RBP1.74□□□□□ -2.13
VAM6YDL077C SSP1P38871 571 aa1.74□□□□□ -2.13
VAM6YDL077C GYP5Q12344 894 aa1.73□□□□□ -2.13
VAM6YDL077C SAM3Q08986 587 aa1.73□□□□□ -2.13
VAM6YDL077C HTA1P04911 132 aaKnown RBP1.73□□□□□ -2.13
VAM6YDL077C HTA2P04912 132 aa1.73□□□□□ -2.13
VAM6YDL077C MIF2P35201 549 aa1.72□□□□□ -2.13
VAM6YDL077C DCW1P36091 449 aa1.72□□□□□ -2.13
VAM6YDL077C PRE3P38624 215 aa1.72□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 47.4 ms