Protein–RNA interactions for Protein: P40438

VTH1, VPS10 homolog 1, yeastyeast

Predictions only

Length 1,549 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VTH1P40438 YML009W-BYML009W-B 477 nt32.44■■■□□ 2.78
VTH1P40438 NOP1YDL014W 984 nt31.34■■■□□ 2.61
VTH1P40438 NSR1YGR159C 1245 nt31.11■■■□□ 2.57
VTH1P40438 YKL036CYKL036C 393 nt29.83■■■□□ 2.37
VTH1P40438 YJL027CYJL027C 417 nt28.01■■■□□ 2.07
VTH1P40438 Q0297Q0297 156 nt27.79■■■□□ 2.04
VTH1P40438 SCS3YGL126W 1143 nt27.72■■■□□ 2.03
VTH1P40438 SRX1YKL086W 384 nt27.6■■■□□ 2.01
VTH1P40438 MDJ1YFL016C 1536 nt27.48■■□□□ 1.99
VTH1P40438 YCR051WYCR051W 669 nt26.35■■□□□ 1.81
VTH1P40438 YOL085CYOL085C 342 nt25.74■■□□□ 1.71
VTH1P40438 PKP1YIL042C 1185 nt25.56■■□□□ 1.68
VTH1P40438 SCJ1YMR214W 1134 nt25.05■■□□□ 1.6
VTH1P40438 RPP1BYDL130W 321 nt24.96■■□□□ 1.59
VTH1P40438 ATS1YAL020C 1002 nt24.76■■□□□ 1.55
VTH1P40438 TRN1tP(UGG)A 72 nt24.66■■□□□ 1.54
VTH1P40438 SUF9tP(UGG)F 72 nt24.66■■□□□ 1.54
VTH1P40438 SUF8tP(UGG)H 72 nt24.66■■□□□ 1.54
VTH1P40438 tP(UGG)LtP(UGG)L 72 nt24.66■■□□□ 1.54
VTH1P40438 SUF7tP(UGG)M 72 nt24.66■■□□□ 1.54
VTH1P40438 tP(UGG)N1tP(UGG)N1 72 nt24.66■■□□□ 1.54
VTH1P40438 tP(UGG)N2tP(UGG)N2 72 nt24.66■■□□□ 1.54
VTH1P40438 tP(UGG)O1tP(UGG)O1 72 nt24.66■■□□□ 1.54
VTH1P40438 SUF11tP(UGG)O2 72 nt24.66■■□□□ 1.54
VTH1P40438 DBP2YNL112W 1641 nt24.44■■□□□ 1.5
VTH1P40438 CCC1YLR220W 969 nt24.4■■□□□ 1.5
VTH1P40438 PET122YER153C 765 nt24■■□□□ 1.43
VTH1P40438 SCR1SCR1 522 nt23.71■■□□□ 1.39
VTH1P40438 tP(UGG)O3tP(UGG)O3 72 nt23.47■■□□□ 1.35
VTH1P40438 RRN5YLR141W 1092 nt23.18■■□□□ 1.3
VTH1P40438 RTC3YHR087W 336 nt23.1■■□□□ 1.29
VTH1P40438 RSB1YOR049C 1065 nt23.09■■□□□ 1.29
VTH1P40438 RVS167YDR388W 1449 nt23■■□□□ 1.27
VTH1P40438 YBR190WYBR190W 312 nt22.83■■□□□ 1.25
VTH1P40438 YER088W-BYER088W-B 147 nt22.77■■□□□ 1.24
VTH1P40438 PST2YDR032C 597 nt22.74■■□□□ 1.23
VTH1P40438 YDJ1YNL064C 1230 nt22.53■■□□□ 1.2
VTH1P40438 SHR5YOL110W 714 nt22.42■■□□□ 1.18
VTH1P40438 YKL097CYKL097C 411 nt22.41■■□□□ 1.18
VTH1P40438 GAR1YHR089C 618 nt22.13■■□□□ 1.13
VTH1P40438 SHU1YHL006C 453 nt21.87■■□□□ 1.09
VTH1P40438 DEP1YAL013W 1218 nt21.77■■□□□ 1.08
VTH1P40438 URN1YPR152C 1398 nt21.46■■□□□ 1.03
VTH1P40438 YOR139CYOR139C 393 nt21.45■■□□□ 1.02
VTH1P40438 YAL037C-BYAL037C-B 975 nt21.41■■□□□ 1.02
VTH1P40438 TIR1YER011W 765 nt21.29■■□□□ 1
VTH1P40438 YNL208WYNL208W 600 nt21.2■□□□□ 0.98
VTH1P40438 RPN10YHR200W 807 nt21.11■□□□□ 0.97
VTH1P40438 NPL3YDR432W 1245 nt21.05■□□□□ 0.96
VTH1P40438 SRB2YHR041C 633 nt20.99■□□□□ 0.95
VTH1P40438 SSA1YAL005C 1929 nt20.96■□□□□ 0.95
VTH1P40438 MNP1YGL068W 585 nt20.94■□□□□ 0.94
VTH1P40438 OPI9YLR338W 858 nt20.83■□□□□ 0.92
VTH1P40438 SAH1YER043C 1350 nt20.67■□□□□ 0.9
VTH1P40438 WWM1YFL010C 636 nt20.62■□□□□ 0.89
VTH1P40438 HOM6YJR139C 1080 nt20.62■□□□□ 0.89
VTH1P40438 YOL037CYOL037C 354 nt20.57■□□□□ 0.88
VTH1P40438 YGR021WYGR021W 873 nt20.54■□□□□ 0.88
VTH1P40438 YJR120WYJR120W 351 nt20.5■□□□□ 0.87
VTH1P40438 YJR018WYJR018W 363 nt20.39■□□□□ 0.85
VTH1P40438 tM(CAU)CtM(CAU)C 72 nt20.34■□□□□ 0.85
VTH1P40438 IMT4tM(CAU)E 72 nt20.34■□□□□ 0.85
VTH1P40438 IMT3tM(CAU)J3 72 nt20.34■□□□□ 0.85
VTH1P40438 IMT1tM(CAU)O1 72 nt20.34■□□□□ 0.85
VTH1P40438 IMT2tM(CAU)P 72 nt20.34■□□□□ 0.85
VTH1P40438 RKM5YLR137W 1104 nt20.31■□□□□ 0.84
VTH1P40438 PUT4YOR348C 1884 nt20.3■□□□□ 0.84
VTH1P40438 ARE1YCR048W 1833 nt20.24■□□□□ 0.83
VTH1P40438 PUN1YLR414C 792 nt20.21■□□□□ 0.83
VTH1P40438 YHR049C-AYHR049C-A 297 nt20.17■□□□□ 0.82
VTH1P40438 RPP2BYDR382W 333 nt20.12■□□□□ 0.81
VTH1P40438 YFL021C-AYFL021C-A 855 nt20.11■□□□□ 0.81
VTH1P40438 SSA3YBL075C 1950 nt20.06■□□□□ 0.8
VTH1P40438 PUS2YGL063W 1113 nt20.05■□□□□ 0.8
VTH1P40438 MOT3YMR070W 1473 nt20.03■□□□□ 0.8
VTH1P40438 YLR281CYLR281C 468 nt19.92■□□□□ 0.78
VTH1P40438 BDH2YAL061W 1254 nt19.91■□□□□ 0.78
VTH1P40438 PTC2YER089C 1395 nt19.89■□□□□ 0.78
VTH1P40438 WHI5YOR083W 888 nt19.81■□□□□ 0.76
VTH1P40438 POA1YBR022W 534 nt19.76■□□□□ 0.75
VTH1P40438 BSC6YOL137W 1494 nt19.72■□□□□ 0.75
VTH1P40438 YLR236CYLR236C 324 nt19.71■□□□□ 0.75
VTH1P40438 FMP45YDL222C 930 nt19.69■□□□□ 0.74
VTH1P40438 BUD23YCR047C 828 nt19.68■□□□□ 0.74
VTH1P40438 YBL100CYBL100C 315 nt19.61■□□□□ 0.73
VTH1P40438 FIS1YIL065C 468 nt19.61■□□□□ 0.73
VTH1P40438 YPR011CYPR011C 981 nt19.57■□□□□ 0.72
VTH1P40438 LSM3YLR438C-A 270 nt19.53■□□□□ 0.72
VTH1P40438 DSK2YMR276W 1122 nt19.53■□□□□ 0.72
VTH1P40438 FPR4YLR449W 1179 nt19.51■□□□□ 0.71
VTH1P40438 NAB2YGL122C 1578 nt19.46■□□□□ 0.71
VTH1P40438 PHO4YFR034C 939 nt19.41■□□□□ 0.7
VTH1P40438 DAL1YIR027C 1383 nt19.39■□□□□ 0.69
VTH1P40438 INM2YDR287W 879 nt19.33■□□□□ 0.68
VTH1P40438 YCH1YGR203W 447 nt19.33■□□□□ 0.68
VTH1P40438 YLR154C-GYLR154C-G 150 nt19.33■□□□□ 0.68
VTH1P40438 FUN26YAL022C 1554 nt19.29■□□□□ 0.68
VTH1P40438 LPX1YOR084W 1164 nt19.27■□□□□ 0.68
VTH1P40438 TRM9YML014W 840 nt19.25■□□□□ 0.67
VTH1P40438 MRPL8YJL063C 717 nt19.24■□□□□ 0.67
Retrieved 100 of 7,029 protein–RNA pairs in 12.8 ms