Protein–RNA interactions for Protein: P40438

VTH1, VPS10 homolog 1, yeastyeast

Predictions only

Length 1,549 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VTH1P40438 YML009W-BYML009W-B 477 nt32,44■■■□□ 2,78
VTH1P40438 NOP1YDL014W 984 nt31,34■■■□□ 2,61
VTH1P40438 NSR1YGR159C 1245 nt31,11■■■□□ 2,57
VTH1P40438 YKL036CYKL036C 393 nt29,83■■■□□ 2,37
VTH1P40438 YJL027CYJL027C 417 nt28,01■■■□□ 2,07
VTH1P40438 Q0297Q0297 156 nt27,79■■■□□ 2,04
VTH1P40438 SCS3YGL126W 1143 nt27,72■■■□□ 2,03
VTH1P40438 SRX1YKL086W 384 nt27,6■■■□□ 2,01
VTH1P40438 MDJ1YFL016C 1536 nt27,48■■□□□ 1,99
VTH1P40438 YCR051WYCR051W 669 nt26,35■■□□□ 1,81
VTH1P40438 YOL085CYOL085C 342 nt25,74■■□□□ 1,71
VTH1P40438 PKP1YIL042C 1185 nt25,56■■□□□ 1,68
VTH1P40438 SCJ1YMR214W 1134 nt25,05■■□□□ 1,6
VTH1P40438 RPP1BYDL130W 321 nt24,96■■□□□ 1,59
VTH1P40438 ATS1YAL020C 1002 nt24,76■■□□□ 1,55
VTH1P40438 TRN1tP(UGG)A 72 nt24,66■■□□□ 1,54
VTH1P40438 SUF9tP(UGG)F 72 nt24,66■■□□□ 1,54
VTH1P40438 SUF8tP(UGG)H 72 nt24,66■■□□□ 1,54
VTH1P40438 tP(UGG)LtP(UGG)L 72 nt24,66■■□□□ 1,54
VTH1P40438 SUF7tP(UGG)M 72 nt24,66■■□□□ 1,54
VTH1P40438 tP(UGG)N1tP(UGG)N1 72 nt24,66■■□□□ 1,54
VTH1P40438 tP(UGG)N2tP(UGG)N2 72 nt24,66■■□□□ 1,54
VTH1P40438 tP(UGG)O1tP(UGG)O1 72 nt24,66■■□□□ 1,54
VTH1P40438 SUF11tP(UGG)O2 72 nt24,66■■□□□ 1,54
VTH1P40438 DBP2YNL112W 1641 nt24,44■■□□□ 1,5
VTH1P40438 CCC1YLR220W 969 nt24,4■■□□□ 1,5
VTH1P40438 PET122YER153C 765 nt24■■□□□ 1,43
VTH1P40438 SCR1SCR1 522 nt23,71■■□□□ 1,39
VTH1P40438 tP(UGG)O3tP(UGG)O3 72 nt23,47■■□□□ 1,35
VTH1P40438 RRN5YLR141W 1092 nt23,18■■□□□ 1,3
VTH1P40438 RTC3YHR087W 336 nt23,1■■□□□ 1,29
VTH1P40438 RSB1YOR049C 1065 nt23,09■■□□□ 1,29
VTH1P40438 RVS167YDR388W 1449 nt23■■□□□ 1,27
VTH1P40438 YBR190WYBR190W 312 nt22,83■■□□□ 1,25
VTH1P40438 YER088W-BYER088W-B 147 nt22,77■■□□□ 1,24
VTH1P40438 PST2YDR032C 597 nt22,74■■□□□ 1,23
VTH1P40438 YDJ1YNL064C 1230 nt22,53■■□□□ 1,2
VTH1P40438 SHR5YOL110W 714 nt22,42■■□□□ 1,18
VTH1P40438 YKL097CYKL097C 411 nt22,41■■□□□ 1,18
VTH1P40438 GAR1YHR089C 618 nt22,13■■□□□ 1,13
VTH1P40438 SHU1YHL006C 453 nt21,87■■□□□ 1,09
VTH1P40438 DEP1YAL013W 1218 nt21,77■■□□□ 1,08
VTH1P40438 URN1YPR152C 1398 nt21,46■■□□□ 1,03
VTH1P40438 YOR139CYOR139C 393 nt21,45■■□□□ 1,02
VTH1P40438 YAL037C-BYAL037C-B 975 nt21,41■■□□□ 1,02
VTH1P40438 TIR1YER011W 765 nt21,29■■□□□ 1
VTH1P40438 YNL208WYNL208W 600 nt21,2■□□□□ 0,98
VTH1P40438 RPN10YHR200W 807 nt21,11■□□□□ 0,97
VTH1P40438 NPL3YDR432W 1245 nt21,05■□□□□ 0,96
VTH1P40438 SRB2YHR041C 633 nt20,99■□□□□ 0,95
VTH1P40438 SSA1YAL005C 1929 nt20,96■□□□□ 0,95
VTH1P40438 MNP1YGL068W 585 nt20,94■□□□□ 0,94
VTH1P40438 OPI9YLR338W 858 nt20,83■□□□□ 0,92
VTH1P40438 SAH1YER043C 1350 nt20,67■□□□□ 0,9
VTH1P40438 WWM1YFL010C 636 nt20,62■□□□□ 0,89
VTH1P40438 HOM6YJR139C 1080 nt20,62■□□□□ 0,89
VTH1P40438 YOL037CYOL037C 354 nt20,57■□□□□ 0,88
VTH1P40438 YGR021WYGR021W 873 nt20,54■□□□□ 0,88
VTH1P40438 YJR120WYJR120W 351 nt20,5■□□□□ 0,87
VTH1P40438 YJR018WYJR018W 363 nt20,39■□□□□ 0,85
VTH1P40438 tM(CAU)CtM(CAU)C 72 nt20,34■□□□□ 0,85
VTH1P40438 IMT4tM(CAU)E 72 nt20,34■□□□□ 0,85
VTH1P40438 IMT3tM(CAU)J3 72 nt20,34■□□□□ 0,85
VTH1P40438 IMT1tM(CAU)O1 72 nt20,34■□□□□ 0,85
VTH1P40438 IMT2tM(CAU)P 72 nt20,34■□□□□ 0,85
VTH1P40438 RKM5YLR137W 1104 nt20,31■□□□□ 0,84
VTH1P40438 PUT4YOR348C 1884 nt20,3■□□□□ 0,84
VTH1P40438 ARE1YCR048W 1833 nt20,24■□□□□ 0,83
VTH1P40438 PUN1YLR414C 792 nt20,21■□□□□ 0,83
VTH1P40438 YHR049C-AYHR049C-A 297 nt20,17■□□□□ 0,82
VTH1P40438 RPP2BYDR382W 333 nt20,12■□□□□ 0,81
VTH1P40438 YFL021C-AYFL021C-A 855 nt20,11■□□□□ 0,81
VTH1P40438 SSA3YBL075C 1950 nt20,06■□□□□ 0,8
VTH1P40438 PUS2YGL063W 1113 nt20,05■□□□□ 0,8
VTH1P40438 MOT3YMR070W 1473 nt20,03■□□□□ 0,8
VTH1P40438 YLR281CYLR281C 468 nt19,92■□□□□ 0,78
VTH1P40438 BDH2YAL061W 1254 nt19,91■□□□□ 0,78
VTH1P40438 PTC2YER089C 1395 nt19,89■□□□□ 0,78
VTH1P40438 WHI5YOR083W 888 nt19,81■□□□□ 0,76
VTH1P40438 POA1YBR022W 534 nt19,76■□□□□ 0,75
VTH1P40438 BSC6YOL137W 1494 nt19,72■□□□□ 0,75
VTH1P40438 YLR236CYLR236C 324 nt19,71■□□□□ 0,75
VTH1P40438 FMP45YDL222C 930 nt19,69■□□□□ 0,74
VTH1P40438 BUD23YCR047C 828 nt19,68■□□□□ 0,74
VTH1P40438 YBL100CYBL100C 315 nt19,61■□□□□ 0,73
VTH1P40438 FIS1YIL065C 468 nt19,61■□□□□ 0,73
VTH1P40438 YPR011CYPR011C 981 nt19,57■□□□□ 0,72
VTH1P40438 LSM3YLR438C-A 270 nt19,53■□□□□ 0,72
VTH1P40438 DSK2YMR276W 1122 nt19,53■□□□□ 0,72
VTH1P40438 FPR4YLR449W 1179 nt19,51■□□□□ 0,71
VTH1P40438 NAB2YGL122C 1578 nt19,46■□□□□ 0,71
VTH1P40438 PHO4YFR034C 939 nt19,41■□□□□ 0,7
VTH1P40438 DAL1YIR027C 1383 nt19,39■□□□□ 0,69
VTH1P40438 INM2YDR287W 879 nt19,33■□□□□ 0,68
VTH1P40438 YCH1YGR203W 447 nt19,33■□□□□ 0,68
VTH1P40438 YLR154C-GYLR154C-G 150 nt19,33■□□□□ 0,68
VTH1P40438 FUN26YAL022C 1554 nt19,29■□□□□ 0,68
VTH1P40438 LPX1YOR084W 1164 nt19,27■□□□□ 0,68
VTH1P40438 TRM9YML014W 840 nt19,25■□□□□ 0,67
VTH1P40438 MRPL8YJL063C 717 nt19,24■□□□□ 0,67
Retrieved 100 of 7,029 protein–RNA pairs in 9,9 ms