RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	SSN3	P39073	555 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	MNN1	P39106	762 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	RVS167	P39743	482 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	AAD14	P42884	376 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	YJR115W	P47152	169 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	ADI1	Q03677	179 aa		3.12	□□□□□ -1.91
HRD3	YLR207W	TMA46	Q12000	345 aa	Known RBP	3.12	□□□□□ -1.91
HRD3	YLR207W	SNQ2	P32568	1501 aa	Known RBP	3.11	□□□□□ -1.91
HRD3	YLR207W	RAD4	P14736	754 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.11	□□□□□ -1.91	not detected
HRD3	YLR207W	FAA4	P47912	694 aa	Known RBP	3.11	□□□□□ -1.91
HRD3	YLR207W	ULP1	Q02724	621 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	PMT7	Q06644	662 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	MRL1	Q06815	381 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	RTT10	Q08924	1013 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	NOP2	P40991	618 aa	Known RBP	3.11	□□□□□ -1.91
HRD3	YLR207W	YPL109C	Q02981	657 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	TOS4	Q06266	489 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	BDF2	Q07442	638 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	OPI10	Q08202	246 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	OSH2	Q12451	1283 aa		3.11	□□□□□ -1.91
HRD3	YLR207W	MET5	P47169	1442 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	RPP1A	P05318	106 aa	Predicted RBP	3.1	□□□□□ -1.91
HRD3	YLR207W	ASH1	P34233	588 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	GRX7	P38068	203 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	SHU2	P38957	223 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	MSB3	P48566	633 aa	Predicted RBP	3.1	□□□□□ -1.91
HRD3	YLR207W	HUL5	P53119	910 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	SPO75	Q07798	868 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	MET32	Q12041	191 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	MYO4	P32492	1471 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	RPA190	P10964	1664 aa	Known RBP	3.1	□□□□□ -1.91
HRD3	YLR207W	CDC4	P07834	779 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	BAS1	P22035	811 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	DLD1	P32891	587 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	TPM2	P40414	161 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	MSH4	P40965	878 aa	Predicted RBP	3.1	□□□□□ -1.91
HRD3	YLR207W	NUT1	P53114	1132 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	YGL081W	P53156	320 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	LSC2	P53312	427 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	CUS1	Q02554	436 aa	Predicted RBP	3.1	□□□□□ -1.91
HRD3	YLR207W	SPO20	Q04359	397 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	UTP14	Q04500	899 aa	Known RBP	3.1	□□□□□ -1.91
HRD3	YLR207W	YOL057W	Q08225	711 aa		3.1	□□□□□ -1.91
HRD3	YLR207W	PDC6	P26263	563 aa	Known RBP	3.09	□□□□□ -1.91
HRD3	YLR207W	BCK2	P33306	851 aa		3.09	□□□□□ -1.91
HRD3	YLR207W	PEX13	P80667	386 aa		3.09	□□□□□ -1.91
HRD3	YLR207W	RSC2	Q06488	889 aa		3.09	□□□□□ -1.91
HRD3	YLR207W	PDR15	Q04182	1529 aa	Known RBP	3.09	□□□□□ -1.92
HRD3	YLR207W	RPC31	P17890	251 aa		3.09	□□□□□ -1.92
HRD3	YLR207W	AFT1	P22149	690 aa		3.09	□□□□□ -1.92
HRD3	YLR207W	GRX4	P32642	244 aa		3.09	□□□□□ -1.92
HRD3	YLR207W	SHM1	P37292	490 aa	Predicted RBP	3.09	□□□□□ -1.92
HRD3	YLR207W	NCL1	P38205	684 aa	Known RBP	3.09	□□□□□ -1.92
HRD3	YLR207W	ATG14	P38270	344 aa		3.09	□□□□□ -1.92
HRD3	YLR207W	CHZ1	P40019	153 aa	Predicted RBP	3.09	□□□□□ -1.92
HRD3	YLR207W	XKS1	P42826	600 aa		3.09	□□□□□ -1.92
HRD3	YLR207W	PTK2	P47116	818 aa	Known RBP	3.09	□□□□□ -1.92
HRD3	YLR207W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.92	not detected
HRD3	YLR207W	EMG1	Q06287	252 aa	Known RBP	3.09	□□□□□ -1.92
HRD3	YLR207W	NUP157	P40064	1391 aa	Known RBP	3.08	□□□□□ -1.92
HRD3	YLR207W	RPS31	P05759	152 aa	Known RBP	3.08	□□□□□ -1.92
HRD3	YLR207W	GCR1	P07261	785 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	PYC2	P32327	1180 aa	Known RBP	3.08	□□□□□ -1.92
HRD3	YLR207W	DAL1	P32375	460 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	UGA4	P32837	571 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	APM2	P38700	605 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	SPF1	P39986	1215 aa	Known RBP	3.08	□□□□□ -1.92
HRD3	YLR207W	NUP82	P40368	713 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	YIL165C	P40446	119 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	BUD6	P41697	788 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	YLR125W	Q12138	136 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	VPS15	P22219	1454 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	GEA1	P47102	1408 aa	Predicted RBP	3.08	□□□□□ -1.92
HRD3	YLR207W	LEU1	P07264	779 aa	Known RBP	3.08	□□□□□ -1.92
HRD3	YLR207W	PHO8	P11491	566 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	RGP1	P16664	663 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	GAL11	P19659	1081 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	YJR142W	P47173	342 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	TYW3	P53177	273 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	YGR053C	P53234	283 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	YGR125W	P53273	1036 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	MSH6	Q03834	1242 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	PSH1	Q12161	406 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	GIN4	Q12263	1142 aa		3.08	□□□□□ -1.92
HRD3	YLR207W	SNT2	P53127	1403 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-JR2	P47100	1755 aa	Known RBP	3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-ER2	Q03619	1755 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-MR1	Q04214	1755 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-MR2	Q04670	1755 aa	Known RBP	3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-LR1	Q12088	1755 aa	Known RBP	3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-NL1	Q12112	1755 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-GR1	Q12141	1755 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	TY1B-BL	Q12490	1755 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	CCP1	P00431	361 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	THI4	P32318	326 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	GGA2	P38817	585 aa	Known RBP	3.07	□□□□□ -1.92
HRD3	YLR207W	PEX28	P38848	579 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	XDJ1	P39102	459 aa		3.07	□□□□□ -1.92
HRD3	YLR207W	SNF7	P39929	240 aa	Known RBP	3.07	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms