Protein–RNA interactions for Protein: Q03834

MSH6, DNA mismatch repair protein MSH6, yeastyeast

Predictions only

Length 1,242 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH6Q03834 NSR1YGR159C 1245 nt20.84■□□□□ 0.93
MSH6Q03834 YML009W-BYML009W-B 477 nt20.83■□□□□ 0.93
MSH6Q03834 NOP1YDL014W 984 nt20.26■□□□□ 0.83
MSH6Q03834 MDJ1YFL016C 1536 nt18.73■□□□□ 0.59
MSH6Q03834 YKL036CYKL036C 393 nt18.63■□□□□ 0.57
MSH6Q03834 Q0297Q0297 156 nt17.66■□□□□ 0.42
MSH6Q03834 SRX1YKL086W 384 nt17.66■□□□□ 0.42
MSH6Q03834 YJL027CYJL027C 417 nt17.39■□□□□ 0.37
MSH6Q03834 SCS3YGL126W 1143 nt16.98■□□□□ 0.31
MSH6Q03834 YCR051WYCR051W 669 nt16.79■□□□□ 0.28
MSH6Q03834 DBP2YNL112W 1641 nt16.36■□□□□ 0.21
MSH6Q03834 YOL085CYOL085C 342 nt16.13■□□□□ 0.17
MSH6Q03834 YBR190WYBR190W 312 nt16.09■□□□□ 0.17
MSH6Q03834 TRN1tP(UGG)A 72 nt15.96■□□□□ 0.15
MSH6Q03834 SUF9tP(UGG)F 72 nt15.96■□□□□ 0.15
MSH6Q03834 SUF8tP(UGG)H 72 nt15.96■□□□□ 0.15
MSH6Q03834 tP(UGG)LtP(UGG)L 72 nt15.96■□□□□ 0.15
MSH6Q03834 SUF7tP(UGG)M 72 nt15.96■□□□□ 0.15
MSH6Q03834 tP(UGG)N1tP(UGG)N1 72 nt15.96■□□□□ 0.15
MSH6Q03834 tP(UGG)N2tP(UGG)N2 72 nt15.96■□□□□ 0.15
MSH6Q03834 tP(UGG)O1tP(UGG)O1 72 nt15.96■□□□□ 0.15
MSH6Q03834 SUF11tP(UGG)O2 72 nt15.96■□□□□ 0.15
MSH6Q03834 PKP1YIL042C 1185 nt15.87■□□□□ 0.13
MSH6Q03834 RPP1BYDL130W 321 nt15.86■□□□□ 0.13
MSH6Q03834 CCC1YLR220W 969 nt15.85■□□□□ 0.13
MSH6Q03834 RTC3YHR087W 336 nt15.79■□□□□ 0.12
MSH6Q03834 RVS167YDR388W 1449 nt15.55■□□□□ 0.08
MSH6Q03834 SSA3YBL075C 1950 nt15.31■□□□□ 0.04
MSH6Q03834 SCJ1YMR214W 1134 nt15.22■□□□□ 0.03
MSH6Q03834 ATS1YAL020C 1002 nt15.17■□□□□ 0.02
MSH6Q03834 PET122YER153C 765 nt15.15■□□□□ 0.02
MSH6Q03834 tP(UGG)O3tP(UGG)O3 72 nt15.11■□□□□ 0.01
MSH6Q03834 SCR1SCR1 522 nt15.04■□□□□ -0
MSH6Q03834 SHR5YOL110W 714 nt14.85□□□□□ -0.03
MSH6Q03834 PUT4YOR348C 1884 nt14.73□□□□□ -0.05
MSH6Q03834 RRN5YLR141W 1092 nt14.71□□□□□ -0.05
MSH6Q03834 YDJ1YNL064C 1230 nt14.62□□□□□ -0.07
MSH6Q03834 URN1YPR152C 1398 nt14.61□□□□□ -0.07
MSH6Q03834 DEP1YAL013W 1218 nt14.51□□□□□ -0.09
MSH6Q03834 RPN10YHR200W 807 nt14.44□□□□□ -0.1
MSH6Q03834 RSB1YOR049C 1065 nt14.44□□□□□ -0.1
MSH6Q03834 OPI9YLR338W 858 nt14.43□□□□□ -0.1
MSH6Q03834 YER088W-BYER088W-B 147 nt14.42□□□□□ -0.1
MSH6Q03834 SAH1YER043C 1350 nt14.4□□□□□ -0.1
MSH6Q03834 ARE1YCR048W 1833 nt14.38□□□□□ -0.11
MSH6Q03834 GAR1YHR089C 618 nt14.31□□□□□ -0.12
MSH6Q03834 POA1YBR022W 534 nt14.31□□□□□ -0.12
MSH6Q03834 YNL208WYNL208W 600 nt14.3□□□□□ -0.12
MSH6Q03834 YHR049C-AYHR049C-A 297 nt14.28□□□□□ -0.12
MSH6Q03834 Q0182Q0182 405 nt14.11□□□□□ -0.15
MSH6Q03834 PST2YDR032C 597 nt14.09□□□□□ -0.15
MSH6Q03834 PUN1YLR414C 792 nt14.07□□□□□ -0.16
MSH6Q03834 BSC6YOL137W 1494 nt14.05□□□□□ -0.16
MSH6Q03834 BUD23YCR047C 828 nt13.98□□□□□ -0.17
MSH6Q03834 YJR018WYJR018W 363 nt13.93□□□□□ -0.18
MSH6Q03834 PTC2YER089C 1395 nt13.91□□□□□ -0.18
MSH6Q03834 MOT3YMR070W 1473 nt13.87□□□□□ -0.19
MSH6Q03834 TIR1YER011W 765 nt13.83□□□□□ -0.2
MSH6Q03834 NAB2YGL122C 1578 nt13.79□□□□□ -0.2
MSH6Q03834 RPP2BYDR382W 333 nt13.66□□□□□ -0.22
MSH6Q03834 SSA1YAL005C 1929 nt13.62□□□□□ -0.23
MSH6Q03834 FPR4YLR449W 1179 nt13.57□□□□□ -0.24
MSH6Q03834 DAL1YIR027C 1383 nt13.55□□□□□ -0.24
MSH6Q03834 SHU1YHL006C 453 nt13.51□□□□□ -0.25
MSH6Q03834 INM2YDR287W 879 nt13.5□□□□□ -0.25
MSH6Q03834 SRB2YHR041C 633 nt13.5□□□□□ -0.25
MSH6Q03834 YJR120WYJR120W 351 nt13.49□□□□□ -0.25
MSH6Q03834 FIS1YIL065C 468 nt13.48□□□□□ -0.25
MSH6Q03834 YKL097CYKL097C 411 nt13.47□□□□□ -0.25
MSH6Q03834 PHO4YFR034C 939 nt13.4□□□□□ -0.26
MSH6Q03834 SPT5YML010W 3192 nt13.38□□□□□ -0.27
MSH6Q03834 YBL100CYBL100C 315 nt13.31□□□□□ -0.28
MSH6Q03834 YAL037C-BYAL037C-B 975 nt13.26□□□□□ -0.29
MSH6Q03834 BDH2YAL061W 1254 nt13.25□□□□□ -0.29
MSH6Q03834 SSA4YER103W 1929 nt13.23□□□□□ -0.29
MSH6Q03834 MEP2YNL142W 1500 nt13.2□□□□□ -0.3
MSH6Q03834 YPS1YLR120C 1710 nt13.2□□□□□ -0.3
MSH6Q03834 WWM1YFL010C 636 nt13.2□□□□□ -0.3
MSH6Q03834 YHR165W-AYHR165W-A 312 nt13.17□□□□□ -0.3
MSH6Q03834 YGR021WYGR021W 873 nt13.15□□□□□ -0.3
MSH6Q03834 FUN26YAL022C 1554 nt13.11□□□□□ -0.31
MSH6Q03834 TRM9YML014W 840 nt13.1□□□□□ -0.31
MSH6Q03834 YDR095CYDR095C 411 nt13.09□□□□□ -0.31
MSH6Q03834 ALF1YNL148C 765 nt13.09□□□□□ -0.31
MSH6Q03834 HOM6YJR139C 1080 nt13.08□□□□□ -0.32
MSH6Q03834 LSM3YLR438C-A 270 nt13.03□□□□□ -0.32
MSH6Q03834 MNP1YGL068W 585 nt13.02□□□□□ -0.33
MSH6Q03834 YOR139CYOR139C 393 nt13.02□□□□□ -0.33
MSH6Q03834 YFL021C-AYFL021C-A 855 nt13.01□□□□□ -0.33
MSH6Q03834 DCW1YKL046C 1350 nt12.94□□□□□ -0.34
MSH6Q03834 SUF2tP(AGG)C 72 nt12.93□□□□□ -0.34
MSH6Q03834 SUF10tP(AGG)N 72 nt12.93□□□□□ -0.34
MSH6Q03834 BDF1YLR399C 2061 nt12.92□□□□□ -0.34
MSH6Q03834 CCT6YDR188W 1641 nt12.91□□□□□ -0.34
MSH6Q03834 YMR090WYMR090W 684 nt12.9□□□□□ -0.34
MSH6Q03834 RPP2AYOL039W 321 nt12.88□□□□□ -0.35
MSH6Q03834 RKM5YLR137W 1104 nt12.87□□□□□ -0.35
MSH6Q03834 NPL3YDR432W 1245 nt12.84□□□□□ -0.35
MSH6Q03834 EMI2YDR516C 1503 nt12.83□□□□□ -0.35
MSH6Q03834 PAC11YDR488C 1602 nt12.8□□□□□ -0.36
Retrieved 100 of 7,029 protein–RNA pairs in 13.2 ms