Protein–RNA interactions for Protein: P38848

PEX28, Peroxisomal membrane protein PEX28, yeastyeast

Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PEX28P38848 YML009W-BYML009W-B 477 nt21.43■■□□□ 1.02
PEX28P38848 NOP1YDL014W 984 nt21.06■□□□□ 0.96
PEX28P38848 NSR1YGR159C 1245 nt20.9■□□□□ 0.94
PEX28P38848 YKL036CYKL036C 393 nt19.87■□□□□ 0.77
PEX28P38848 YJL027CYJL027C 417 nt18.63■□□□□ 0.57
PEX28P38848 Q0297Q0297 156 nt18.58■□□□□ 0.56
PEX28P38848 SRX1YKL086W 384 nt18.39■□□□□ 0.53
PEX28P38848 SCS3YGL126W 1143 nt18.31■□□□□ 0.52
PEX28P38848 MDJ1YFL016C 1536 nt18.06■□□□□ 0.48
PEX28P38848 YCR051WYCR051W 669 nt17.47■□□□□ 0.39
PEX28P38848 YOL085CYOL085C 342 nt17.18■□□□□ 0.34
PEX28P38848 SCJ1YMR214W 1134 nt16.87■□□□□ 0.29
PEX28P38848 PKP1YIL042C 1185 nt16.83■□□□□ 0.28
PEX28P38848 RPP1BYDL130W 321 nt16.68■□□□□ 0.26
PEX28P38848 ATS1YAL020C 1002 nt16.51■□□□□ 0.23
PEX28P38848 TRN1tP(UGG)A 72 nt16.34■□□□□ 0.21
PEX28P38848 SUF9tP(UGG)F 72 nt16.34■□□□□ 0.21
PEX28P38848 SUF8tP(UGG)H 72 nt16.34■□□□□ 0.21
PEX28P38848 tP(UGG)LtP(UGG)L 72 nt16.34■□□□□ 0.21
PEX28P38848 SUF7tP(UGG)M 72 nt16.34■□□□□ 0.21
PEX28P38848 tP(UGG)N1tP(UGG)N1 72 nt16.34■□□□□ 0.21
PEX28P38848 tP(UGG)N2tP(UGG)N2 72 nt16.34■□□□□ 0.21
PEX28P38848 tP(UGG)O1tP(UGG)O1 72 nt16.34■□□□□ 0.21
PEX28P38848 SUF11tP(UGG)O2 72 nt16.34■□□□□ 0.21
PEX28P38848 DBP2YNL112W 1641 nt16.17■□□□□ 0.18
PEX28P38848 CCC1YLR220W 969 nt16.15■□□□□ 0.18
PEX28P38848 PET122YER153C 765 nt15.86■□□□□ 0.13
PEX28P38848 SCR1SCR1 522 nt15.86■□□□□ 0.13
PEX28P38848 tP(UGG)O3tP(UGG)O3 72 nt15.61■□□□□ 0.09
PEX28P38848 RRN5YLR141W 1092 nt15.43■□□□□ 0.06
PEX28P38848 RVS167YDR388W 1449 nt15.38■□□□□ 0.05
PEX28P38848 YBR190WYBR190W 312 nt15.31■□□□□ 0.04
PEX28P38848 RTC3YHR087W 336 nt15.3■□□□□ 0.04
PEX28P38848 RSB1YOR049C 1065 nt15.28■□□□□ 0.04
PEX28P38848 PST2YDR032C 597 nt15.2■□□□□ 0.02
PEX28P38848 YER088W-BYER088W-B 147 nt15.14■□□□□ 0.01
PEX28P38848 YDJ1YNL064C 1230 nt15.12■□□□□ 0.01
PEX28P38848 SHR5YOL110W 714 nt14.94□□□□□ -0.02
PEX28P38848 YKL097CYKL097C 411 nt14.88□□□□□ -0.03
PEX28P38848 GAR1YHR089C 618 nt14.67□□□□□ -0.06
PEX28P38848 SHU1YHL006C 453 nt14.46□□□□□ -0.09
PEX28P38848 DEP1YAL013W 1218 nt14.31□□□□□ -0.12
PEX28P38848 URN1YPR152C 1398 nt14.21□□□□□ -0.14
PEX28P38848 YNL208WYNL208W 600 nt14.19□□□□□ -0.14
PEX28P38848 TIR1YER011W 765 nt14.17□□□□□ -0.14
PEX28P38848 RPN10YHR200W 807 nt14.16□□□□□ -0.14
PEX28P38848 YOR139CYOR139C 393 nt14.16□□□□□ -0.14
PEX28P38848 YAL037C-BYAL037C-B 975 nt14.06□□□□□ -0.16
PEX28P38848 Q0182Q0182 405 nt14.04□□□□□ -0.16
PEX28P38848 NPL3YDR432W 1245 nt13.98□□□□□ -0.17
PEX28P38848 OPI9YLR338W 858 nt13.9□□□□□ -0.18
PEX28P38848 SSA1YAL005C 1929 nt13.88□□□□□ -0.19
PEX28P38848 MOT3YMR070W 1473 nt13.77□□□□□ -0.21
PEX28P38848 YGR021WYGR021W 873 nt13.74□□□□□ -0.21
PEX28P38848 SRB2YHR041C 633 nt13.7□□□□□ -0.22
PEX28P38848 YOL037CYOL037C 354 nt13.69□□□□□ -0.22
PEX28P38848 HOM6YJR139C 1080 nt13.68□□□□□ -0.22
PEX28P38848 MNP1YGL068W 585 nt13.67□□□□□ -0.22
PEX28P38848 SAH1YER043C 1350 nt13.67□□□□□ -0.22
PEX28P38848 WWM1YFL010C 636 nt13.61□□□□□ -0.23
PEX28P38848 tM(CAU)CtM(CAU)C 72 nt13.58□□□□□ -0.24
PEX28P38848 IMT4tM(CAU)E 72 nt13.58□□□□□ -0.24
PEX28P38848 IMT3tM(CAU)J3 72 nt13.58□□□□□ -0.24
PEX28P38848 IMT1tM(CAU)O1 72 nt13.58□□□□□ -0.24
PEX28P38848 IMT2tM(CAU)P 72 nt13.58□□□□□ -0.24
PEX28P38848 YJR018WYJR018W 363 nt13.58□□□□□ -0.24
PEX28P38848 PUN1YLR414C 792 nt13.53□□□□□ -0.24
PEX28P38848 PUT4YOR348C 1884 nt13.49□□□□□ -0.25
PEX28P38848 RPP2BYDR382W 333 nt13.48□□□□□ -0.25
PEX28P38848 RKM5YLR137W 1104 nt13.48□□□□□ -0.25
PEX28P38848 YJR120WYJR120W 351 nt13.45□□□□□ -0.26
PEX28P38848 YFL021C-AYFL021C-A 855 nt13.43□□□□□ -0.26
PEX28P38848 ARE1YCR048W 1833 nt13.39□□□□□ -0.27
PEX28P38848 PUS2YGL063W 1113 nt13.32□□□□□ -0.28
PEX28P38848 YLR281CYLR281C 468 nt13.29□□□□□ -0.28
PEX28P38848 BDH2YAL061W 1254 nt13.27□□□□□ -0.29
PEX28P38848 SSA3YBL075C 1950 nt13.25□□□□□ -0.29
PEX28P38848 PTC2YER089C 1395 nt13.24□□□□□ -0.29
PEX28P38848 YHR049C-AYHR049C-A 297 nt13.24□□□□□ -0.29
PEX28P38848 LSM3YLR438C-A 270 nt13.2□□□□□ -0.3
PEX28P38848 WHI5YOR083W 888 nt13.17□□□□□ -0.3
PEX28P38848 BSC6YOL137W 1494 nt13.13□□□□□ -0.31
PEX28P38848 POA1YBR022W 534 nt13.11□□□□□ -0.31
PEX28P38848 INM2YDR287W 879 nt13.05□□□□□ -0.32
PEX28P38848 NAB2YGL122C 1578 nt13.03□□□□□ -0.32
PEX28P38848 YBL100CYBL100C 315 nt13.01□□□□□ -0.33
PEX28P38848 FMP45YDL222C 930 nt12.99□□□□□ -0.33
PEX28P38848 BUD23YCR047C 828 nt12.97□□□□□ -0.33
PEX28P38848 DSK2YMR276W 1122 nt12.97□□□□□ -0.33
PEX28P38848 MRPL8YJL063C 717 nt12.96□□□□□ -0.33
PEX28P38848 DAL1YIR027C 1383 nt12.94□□□□□ -0.34
PEX28P38848 IMP2'YIL154C 1041 nt12.93□□□□□ -0.34
PEX28P38848 TRM9YML014W 840 nt12.93□□□□□ -0.34
PEX28P38848 FPR4YLR449W 1179 nt12.91□□□□□ -0.34
PEX28P38848 YCH1YGR203W 447 nt12.9□□□□□ -0.34
PEX28P38848 YPR011CYPR011C 981 nt12.9□□□□□ -0.34
PEX28P38848 FIS1YIL065C 468 nt12.88□□□□□ -0.35
PEX28P38848 YLR236CYLR236C 324 nt12.87□□□□□ -0.35
PEX28P38848 FUN26YAL022C 1554 nt12.86□□□□□ -0.35
PEX28P38848 YLR154C-GYLR154C-G 150 nt12.83□□□□□ -0.36
Retrieved 100 of 7,029 protein–RNA pairs in 16.2 ms