RNA–Protein interactions for RNA: YJL029C

VPS53, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS53, Length 2,469 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS53	YJL029C	FUN12	P39730	1002 aa	Known RBP	4.24	□□□□□ -1.73
VPS53	YJL029C	IRC8	P47046	822 aa		4.24	□□□□□ -1.73
VPS53	YJL029C	TAH18	Q12181	623 aa		4.24	□□□□□ -1.73
VPS53	YJL029C	ASH1	P34233	588 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	YBL028C	P38202	106 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	ALO1	P54783	526 aa	Known RBP	4.23	□□□□□ -1.73
VPS53	YJL029C	SKG3	Q06315	1026 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	YPL260W	Q08977	551 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	PBS2	P08018	668 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	RTS1	P38903	757 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	TIF4631	P39935	952 aa	Known RBP	4.23	□□□□□ -1.73
VPS53	YJL029C	ACA1	P39970	489 aa		4.23	□□□□□ -1.73
VPS53	YJL029C	SDH2	P21801	266 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	PRE8	P23639	250 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	CDC60	P26637	1090 aa	Known RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	ILV3	P39522	585 aa	Known RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	SOL4	P53315	255 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	KEL3	Q08979	651 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	CFT2	Q12102	859 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	SLA1	P32790	1244 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	PBY1	P38254	753 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	XDJ1	P39102	459 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	BDP1	P46678	594 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	YNR021W	P53723	404 aa	Known RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	NSG2	P53898	299 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	YDL124W	Q07551	312 aa	Known RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	CLF1	Q12309	687 aa	Predicted RBP	4.22	□□□□□ -1.73
VPS53	YJL029C	RAD61	Q99359	647 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	RAD50	P12753	1312 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	TUS1	Q06412	1307 aa		4.22	□□□□□ -1.73
VPS53	YJL029C	SRM1	P21827	482 aa		4.21	□□□□□ -1.73
VPS53	YJL029C	KTR1	P27810	393 aa	Known RBP	4.21	□□□□□ -1.73
VPS53	YJL029C	SPT23	P35210	1082 aa		4.21	□□□□□ -1.73
VPS53	YJL029C	MCD4	P36051	919 aa		4.21	□□□□□ -1.73
VPS53	YJL029C	YKR018C	P36114	725 aa		4.21	□□□□□ -1.73
VPS53	YJL029C	MXR1	P40029	184 aa		4.21	□□□□□ -1.73
VPS53	YJL029C	AIM21	P40563	679 aa		4.21	□□□□□ -1.73
VPS53	YJL029C	PTK2	P47116	818 aa	Known RBP	4.21	□□□□□ -1.73
VPS53	YJL029C	NUP42	P49686	430 aa	Known RBP	4.21	□□□□□ -1.73
VPS53	YJL029C	PKH3	Q03306	898 aa	Predicted RBP	4.21	□□□□□ -1.73
VPS53	YJL029C	SSF2	Q12153	453 aa	Predicted RBP	4.21	□□□□□ -1.73
VPS53	YJL029C	TUB2	P02557	457 aa	Known RBP	4.21	□□□□□ -1.74
VPS53	YJL029C	SEC20	P28791	383 aa		4.21	□□□□□ -1.74
VPS53	YJL029C	EDS1	P38073	919 aa		4.21	□□□□□ -1.74
VPS53	YJL029C	FPR3	P38911	411 aa	Known RBP	4.21	□□□□□ -1.74
VPS53	YJL029C	GPB2	P39717	880 aa		4.21	□□□□□ -1.74
VPS53	YJL029C	TPM1	P17536	199 aa	Known RBP	4.2	□□□□□ -1.74
VPS53	YJL029C	PKC1	P24583	1151 aa		4.2	□□□□□ -1.74
VPS53	YJL029C	MET1	P36150	593 aa		4.2	□□□□□ -1.74
VPS53	YJL029C	SGD1	Q06132	899 aa		4.2	□□□□□ -1.74
VPS53	YJL029C	ICL2	Q12031	575 aa		4.2	□□□□□ -1.74
VPS53	YJL029C	MAC1	P35192	417 aa		4.2	□□□□□ -1.74
VPS53	YJL029C	ARH1	P48360	493 aa		4.2	□□□□□ -1.74
VPS53	YJL029C	LAM4	P38800	1345 aa		4.19	□□□□□ -1.74
VPS53	YJL029C	YDJ1	P25491	409 aa	Known RBP	4.19	□□□□□ -1.74
VPS53	YJL029C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
VPS53	YJL029C	MRPS35	P53292	345 aa		4.19	□□□□□ -1.74
VPS53	YJL029C	SLN1	P39928	1220 aa	Predicted RBP	4.19	□□□□□ -1.74
VPS53	YJL029C	TIM23	P32897	222 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	RRP8	P38961	392 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	ATG1	P53104	897 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	ALD6	P54115	500 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	RPS15	Q01855	142 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	UBX5	Q06682	500 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	CDC19	P00549	500 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	AI4	P03878	556 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	COQ1	P18900	473 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	EUG1	P32474	517 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	GUA1	P38625	525 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	RFC1	P38630	861 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	YHL050C	P38721	697 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	CRG1	P38892	291 aa	RIP-Chip data	4.18	□□□□□ -1.74	not detected
VPS53	YJL029C	STM1	P39015	273 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	PTC2	P39966	464 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	MID1	P41821	548 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	HAP5	Q02516	242 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	FMP30	Q02883	468 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	YML037C	Q03703	340 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	MRD1	Q06106	887 aa	Known RBP	4.18	□□□□□ -1.74
VPS53	YJL029C	NKP2	Q06162	153 aa		4.18	□□□□□ -1.74
VPS53	YJL029C	VMA2	P16140	517 aa	Known RBP	4.17	□□□□□ -1.74
VPS53	YJL029C	RGT1	P32862	1170 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	IXR1	P33417	597 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	MYO3	P36006	1272 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	VID27	P40157	782 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	YMR147W	P40218	223 aa	Known RBP	4.17	□□□□□ -1.74
VPS53	YJL029C	PSF2	P40359	213 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	YFL040W	P43562	540 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	MET7	Q08645	548 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	LAP2	Q10740	671 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	FBP1	P09201	348 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	PAH1	P32567	862 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	WHI3	P34761	661 aa	Known RBP	4.17	□□□□□ -1.74
VPS53	YJL029C	YJL007C	P47080	104 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	YGR125W	P53273	1036 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	SPN1	Q06505	410 aa	Predicted RBP	4.17	□□□□□ -1.74
VPS53	YJL029C	GUD1	Q07729	489 aa		4.17	□□□□□ -1.74
VPS53	YJL029C	TOM71	P38825	639 aa	Known RBP	4.16	□□□□□ -1.74
VPS53	YJL029C	ALG2	P43636	503 aa		4.16	□□□□□ -1.74
VPS53	YJL029C	ECM30	Q06673	1274 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 1370.9 ms