RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeast

Gene SHH4, Length 507 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHH4	YLR164W	FAP1	P53971	965 aa		11.68	□□□□□ -0.54
SHH4	YLR164W	RPS15	Q01855	142 aa	Known RBP	11.68	□□□□□ -0.54
SHH4	YLR164W	RER2	P35196	286 aa		11.67	□□□□□ -0.54
SHH4	YLR164W	CRG1	P38892	291 aa	RIP-Chip data	11.67	□□□□□ -0.54	not detected
SHH4	YLR164W	SPO22	P40511	975 aa		11.67	□□□□□ -0.54
SHH4	YLR164W	UFD2	P54860	961 aa		11.67	□□□□□ -0.54
SHH4	YLR164W	YLR278C	Q05854	1341 aa		11.66	□□□□□ -0.54
SHH4	YLR164W	PRO3	P32263	286 aa	Known RBP	11.66	□□□□□ -0.54
SHH4	YLR164W	RTS1	P38903	757 aa		11.66	□□□□□ -0.54
SHH4	YLR164W	RRP8	P38961	392 aa	Known RBP	11.66	□□□□□ -0.54
SHH4	YLR164W	SPN1	Q06505	410 aa	Predicted RBP	11.66	□□□□□ -0.54
SHH4	YLR164W	RPS9B	P05755	195 aa	Known RBP	11.65	□□□□□ -0.54
SHH4	YLR164W	GLC3	P32775	704 aa		11.65	□□□□□ -0.54
SHH4	YLR164W	SLN1	P39928	1220 aa	Predicted RBP	11.65	□□□□□ -0.54
SHH4	YLR164W	YPL260W	Q08977	551 aa		11.65	□□□□□ -0.54
SHH4	YLR164W	THS1	P04801	734 aa	Known RBP	11.64	□□□□□ -0.55
SHH4	YLR164W	TPM1	P17536	199 aa	Known RBP	11.64	□□□□□ -0.55
SHH4	YLR164W	HPR1	P17629	752 aa	Known RBP	11.64	□□□□□ -0.55
SHH4	YLR164W	FBP26	P32604	452 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	MYO3	P36006	1272 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	VID27	P40157	782 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	DJP1	P40564	432 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	CTF18	P49956	741 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	YGR117C	P53270	476 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	CRF1	Q04930	467 aa		11.64	□□□□□ -0.55
SHH4	YLR164W	ESF1	Q06344	628 aa	Known RBP	11.64	□□□□□ -0.55
SHH4	YLR164W	KEL3	Q08979	651 aa	Predicted RBP	11.64	□□□□□ -0.55
SHH4	YLR164W	GSC2	P40989	1895 aa		11.63	□□□□□ -0.55
SHH4	YLR164W	ANP1	P32629	500 aa		11.63	□□□□□ -0.55
SHH4	YLR164W	ENT3	P47160	408 aa		11.63	□□□□□ -0.55
SHH4	YLR164W	SEN54	Q02825	467 aa	Predicted RBP	11.63	□□□□□ -0.55
SHH4	YLR164W	MRD1	Q06106	887 aa	Known RBP	11.63	□□□□□ -0.55
SHH4	YLR164W	TIM50	Q02776	476 aa		11.62	□□□□□ -0.55
SHH4	YLR164W	TFC6	Q06339	672 aa		11.62	□□□□□ -0.55
SHH4	YLR164W	RAD61	Q99359	647 aa		11.62	□□□□□ -0.55
SHH4	YLR164W	CSM2	P40465	213 aa		11.61	□□□□□ -0.55
SHH4	YLR164W	EPL1	P43572	832 aa		11.61	□□□□□ -0.55
SHH4	YLR164W	ARP5	P53946	755 aa		11.61	□□□□□ -0.55
SHH4	YLR164W	PUS5	Q06244	254 aa		11.61	□□□□□ -0.55
SHH4	YLR164W	CBP1	P07252	654 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	MATALPHA2	P0CY08	210 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	HMLALPHA2	P0CY09	210 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	RIT1	P23796	513 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	KEL1	P38853	1164 aa	Known RBP	11.6	□□□□□ -0.55
SHH4	YLR164W	YGL081W	P53156	320 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	EST2	Q06163	884 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	PCL8	Q08966	492 aa		11.6	□□□□□ -0.55
SHH4	YLR164W	RPL19A	P0CX82	189 aa	Known RBP	11.59	□□□□□ -0.55
SHH4	YLR164W	RPL19B	P0CX83	189 aa	Predicted RBP	11.59	□□□□□ -0.55
SHH4	YLR164W	RTG2	P32608	588 aa	Known RBP	11.59	□□□□□ -0.55
SHH4	YLR164W	AKR1	P39010	764 aa		11.59	□□□□□ -0.55
SHH4	YLR164W	YLR407W	Q06070	228 aa		11.59	□□□□□ -0.55
SHH4	YLR164W	AIM7	Q12156	149 aa		11.59	□□□□□ -0.55
SHH4	YLR164W	ADP1	P25371	1049 aa		11.58	□□□□□ -0.56
SHH4	YLR164W	EMP47	P43555	445 aa		11.58	□□□□□ -0.56
SHH4	YLR164W	HRQ1	Q05549	1077 aa		11.58	□□□□□ -0.56
SHH4	YLR164W	LSP1	Q12230	341 aa	Known RBP	11.58	□□□□□ -0.56
SHH4	YLR164W	ACE2	P21192	770 aa		11.57	□□□□□ -0.56
SHH4	YLR164W	CHS3	P29465	1165 aa		11.57	□□□□□ -0.56
SHH4	YLR164W	YKE2	P52553	114 aa		11.57	□□□□□ -0.56
SHH4	YLR164W	MYO5	Q04439	1219 aa	Known RBP	11.57	□□□□□ -0.56
SHH4	YLR164W	TUB2	P02557	457 aa	Known RBP	11.56	□□□□□ -0.56
SHH4	YLR164W	CPA2	P03965	1118 aa	Known RBP	11.56	□□□□□ -0.56
SHH4	YLR164W	KIN1	P13185	1064 aa		11.56	□□□□□ -0.56
SHH4	YLR164W	MAK31	P23059	88 aa		11.56	□□□□□ -0.56
SHH4	YLR164W	MBR1	P23493	339 aa		11.56	□□□□□ -0.56
SHH4	YLR164W	PRE8	P23639	250 aa		11.56	□□□□□ -0.56
SHH4	YLR164W	VPS24	P36095	224 aa	Known RBP	11.56	□□□□□ -0.56
SHH4	YLR164W	YBL028C	P38202	106 aa		11.56	□□□□□ -0.56
SHH4	YLR164W	YDL124W	Q07551	312 aa	Known RBP	11.56	□□□□□ -0.56
SHH4	YLR164W	YOR111W	Q99210	232 aa		11.56	□□□□□ -0.56
SHH4	YLR164W	PMA1	P05030	918 aa	Known RBP	11.55	□□□□□ -0.56
SHH4	YLR164W	RAD53	P22216	821 aa		11.55	□□□□□ -0.56
SHH4	YLR164W	BIK1	P11709	440 aa		11.54	□□□□□ -0.56
SHH4	YLR164W	SRM1	P21827	482 aa		11.54	□□□□□ -0.56
SHH4	YLR164W	YHL017W	P38745	532 aa		11.54	□□□□□ -0.56
SHH4	YLR164W	MSH4	P40965	878 aa	Predicted RBP	11.54	□□□□□ -0.56
SHH4	YLR164W	SKG3	Q06315	1026 aa		11.54	□□□□□ -0.56
SHH4	YLR164W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	11.53	□□□□□ -0.56	not detected
SHH4	YLR164W	HCA4	P20448	770 aa	Known RBP	11.53	□□□□□ -0.56
SHH4	YLR164W	SPB4	P25808	606 aa	Predicted RBP	11.53	□□□□□ -0.56
SHH4	YLR164W	PRX1	P34227	261 aa	Known RBP	11.53	□□□□□ -0.56
SHH4	YLR164W	VPS8	P39702	1274 aa		11.53	□□□□□ -0.56
SHH4	YLR164W	ELG1	Q12050	791 aa		11.53	□□□□□ -0.56
SHH4	YLR164W	YPL150W	Q12152	901 aa		11.53	□□□□□ -0.56
SHH4	YLR164W	SRP54	P20424	541 aa	Known RBP	11.52	□□□□□ -0.57
SHH4	YLR164W	SWI4	P25302	1093 aa	Known RBP	11.52	□□□□□ -0.57
SHH4	YLR164W	BDH2	P39713	417 aa		11.52	□□□□□ -0.57
SHH4	YLR164W	NIT1	P40447	199 aa		11.52	□□□□□ -0.57
SHH4	YLR164W	RPT6	Q01939	405 aa	Known RBP	11.52	□□□□□ -0.57
SHH4	YLR164W	VPS1	P21576	704 aa	Known RBP	11.51	□□□□□ -0.57
SHH4	YLR164W	SPT21	P35209	758 aa		11.51	□□□□□ -0.57
SHH4	YLR164W	RPN10	P38886	268 aa	Known RBP	11.51	□□□□□ -0.57
SHH4	YLR164W	PSK2	Q08217	1101 aa		11.51	□□□□□ -0.57
SHH4	YLR164W	ISW2	Q08773	1120 aa		11.51	□□□□□ -0.57
SHH4	YLR164W	CSR2	Q12734	1121 aa		11.51	□□□□□ -0.57
SHH4	YLR164W	MPH3	P0CE00	602 aa		11.5	□□□□□ -0.57
SHH4	YLR164W	SAM2	P19358	384 aa	Known RBP	11.5	□□□□□ -0.57
SHH4	YLR164W	MSP1	P28737	362 aa		11.5	□□□□□ -0.57
SHH4	YLR164W	PNT1	P38969	423 aa		11.5	□□□□□ -0.57

Retrieved 100 of 5,963 RNA–protein pairs in 44.3 ms