RNA–Protein interactions for RNA: YLR164W

SHH4, Transcript of Putative alternate subunit of succinate dehydrogenase (SDH), yeastyeast

Gene SHH4, Length 507 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHH4YLR164W SGS1P35187 1447 aa18.74■□□□□ 0.59
SHH4YLR164W MON2P48563 1636 aaPredicted RBP18.52■□□□□ 0.55
SHH4YLR164W INO80P53115 1489 aa18.43■□□□□ 0.54
SHH4YLR164W TCB3Q03640 1545 aaKnown RBP18.33■□□□□ 0.53
SHH4YLR164W TY1B-DR4Q07793 1604 aa18.23■□□□□ 0.51
SHH4YLR164W SWR1Q05471 1514 aa18.03■□□□□ 0.48
SHH4YLR164W HSL1P34244 1518 aa17.82■□□□□ 0.44
SHH4YLR164W SPT6P23615 1451 aaKnown RBP17.74■□□□□ 0.43
SHH4YLR164W SSN2P38931 1420 aa17.71■□□□□ 0.43
SHH4YLR164W DNA2P38859 1522 aa17.66■□□□□ 0.42
SHH4YLR164W SPA2P23201 1466 aaKnown RBP17.59■□□□□ 0.41
SHH4YLR164W HIR3P47171 1648 aa17.47■□□□□ 0.39
SHH4YLR164W KOG1P38873 1557 aa17.42■□□□□ 0.38
SHH4YLR164W XRN1P22147 1528 aaKnown RBP17.27■□□□□ 0.36
SHH4YLR164W DRS1P32892 752 aaKnown RBP17.06■□□□□ 0.32
SHH4YLR164W REV3P14284 1504 aa17.02■□□□□ 0.32
SHH4YLR164W ECM5Q03214 1411 aa16.99■□□□□ 0.31
SHH4YLR164W BUD4P47136 1447 aa16.96■□□□□ 0.3
SHH4YLR164W THO2P53552 1597 aaKnown RBP16.94■□□□□ 0.3
SHH4YLR164W SIN3P22579 1536 aa16.85■□□□□ 0.29
SHH4YLR164W TAF2P23255 1407 aa16.83■□□□□ 0.28
SHH4YLR164W SSK2P53599 1579 aa16.76■□□□□ 0.27
SHH4YLR164W ATG2P53855 1592 aa16.76■□□□□ 0.27
SHH4YLR164W MDS3P53094 1487 aa16.73■□□□□ 0.27
SHH4YLR164W PEP1P32319 1579 aa16.71■□□□□ 0.27
SHH4YLR164W ESP1Q03018 1630 aa16.61■□□□□ 0.25
SHH4YLR164W SKI3P17883 1432 aaKnown RBP16.58■□□□□ 0.24
SHH4YLR164W MYO2P19524 1574 aaKnown RBP16.42■□□□□ 0.22
SHH4YLR164W RSE1Q04693 1361 aaKnown RBP16.41■□□□□ 0.22
SHH4YLR164W YPK9Q12697 1472 aa16.38■□□□□ 0.21
SHH4YLR164W SCC2Q04002 1493 aa16.3■□□□□ 0.2
SHH4YLR164W UFD4P33202 1483 aa16.22■□□□□ 0.19
SHH4YLR164W RPO31P04051 1460 aa16.21■□□□□ 0.19
SHH4YLR164W BPT1P14772 1559 aa16.17■□□□□ 0.18
SHH4YLR164W POL1P13382 1468 aa16.17■□□□□ 0.18
SHH4YLR164W STU1P38198 1513 aa16.09■□□□□ 0.17
SHH4YLR164W YCF1P39109 1515 aaKnown RBP16.09■□□□□ 0.17
SHH4YLR164W RKR1Q04781 1562 aa16.06■□□□□ 0.16
SHH4YLR164W TY2B-LR1P0C2J3 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-FP0CX63 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-GR2P0CX64 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-CP25384 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-DR2Q03494 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY1B-DR1Q03855 1755 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-DR3Q07791 1770 aaKnown RBP16.05■□□□□ 0.16
SHH4YLR164W TY2B-OR1Q12113 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-DR1Q12472 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TY2B-OR2Q12501 1770 aa16.05■□□□□ 0.16
SHH4YLR164W TOP2P06786 1428 aaKnown RBP16.02■□□□□ 0.15
SHH4YLR164W YOR1P53049 1477 aa15.97■□□□□ 0.15
SHH4YLR164W MTC1P47018 478 aaKnown RBP15.94■□□□□ 0.14
SHH4YLR164W TY1B-DR3Q99231 1755 aa15.92■□□□□ 0.14
SHH4YLR164W TY2B-BQ12491 1770 aa15.88■□□□□ 0.13
SHH4YLR164W SMC4Q12267 1418 aa15.87■□□□□ 0.13
SHH4YLR164W TY1B-BRQ12193 1756 aa15.86■□□□□ 0.13
SHH4YLR164W TY1B-GR3Q12316 1755 aa15.86■□□□□ 0.13
SHH4YLR164W TY1B-ORQ92393 1755 aa15.86■□□□□ 0.13
SHH4YLR164W CHD1P32657 1468 aa15.84■□□□□ 0.13
SHH4YLR164W CDC25P04821 1589 aa15.83■□□□□ 0.12
SHH4YLR164W TY1B-HO13535 1793 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-DR5P0C2I2 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-DR6P0C2I3 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-LR2P0C2I5 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-LR3P0C2I6 1755 aaKnown RBP15.79■□□□□ 0.12
SHH4YLR164W TY1B-PR1P0C2I9 1755 aaKnown RBP15.79■□□□□ 0.12
SHH4YLR164W TY1B-PR2P0C2J0 1756 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-PR3P0C2J1 1755 aaKnown RBP15.79■□□□□ 0.12
SHH4YLR164W TY1B-JR1P47098 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-ML2Q03434 1755 aaKnown RBP15.79■□□□□ 0.12
SHH4YLR164W TY1B-ER1Q03612 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-ML1Q04711 1755 aaKnown RBP15.79■□□□□ 0.12
SHH4YLR164W TY1B-GR2Q12269 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-OLQ12273 1755 aa15.79■□□□□ 0.12
SHH4YLR164W TY1B-PLQ12414 1755 aaKnown RBP15.79■□□□□ 0.12
SHH4YLR164W YTA7P40340 1379 aa15.78■□□□□ 0.12
SHH4YLR164W RQC2Q12532 1038 aaKnown RBP15.76■□□□□ 0.11
SHH4YLR164W MMS22Q06164 1454 aa15.74■□□□□ 0.11
SHH4YLR164W PAN1P32521 1480 aa15.71■□□□□ 0.11
SHH4YLR164W MYO4P32492 1471 aa15.71■□□□□ 0.1
SHH4YLR164W DNF1P32660 1571 aa15.7■□□□□ 0.1
SHH4YLR164W SPP41P38904 1435 aa15.68■□□□□ 0.1
SHH4YLR164W ESC1Q03661 1658 aaKnown RBP15.63■□□□□ 0.09
SHH4YLR164W RPA190P10964 1664 aaKnown RBP15.57■□□□□ 0.08
SHH4YLR164W TSC11P40061 1430 aa15.56■□□□□ 0.08
SHH4YLR164W VTH1P40438 1549 aa15.56■□□□□ 0.08
SHH4YLR164W VTH2P40890 1549 aa15.56■□□□□ 0.08
SHH4YLR164W SNQ2P32568 1501 aaKnown RBP15.53■□□□□ 0.08
SHH4YLR164W SAS10Q12136 610 aaPredicted RBP15.52■□□□□ 0.08
SHH4YLR164W TY1B-JR2P47100 1755 aaKnown RBP15.52■□□□□ 0.07
SHH4YLR164W TY1B-ER2Q03619 1755 aa15.52■□□□□ 0.07
SHH4YLR164W TY1B-MR1Q04214 1755 aa15.52■□□□□ 0.07
SHH4YLR164W TY1B-MR2Q04670 1755 aaKnown RBP15.52■□□□□ 0.07
SHH4YLR164W TY1B-LR1Q12088 1755 aaKnown RBP15.52■□□□□ 0.07
SHH4YLR164W TY1B-NL1Q12112 1755 aa15.52■□□□□ 0.07
SHH4YLR164W TY1B-GR1Q12141 1755 aa15.52■□□□□ 0.07
SHH4YLR164W TY1B-BLQ12490 1755 aa15.52■□□□□ 0.07
SHH4YLR164W TRM732Q03496 1420 aa15.48■□□□□ 0.07
SHH4YLR164W STH1P32597 1359 aa15.44■□□□□ 0.06
SHH4YLR164W SNT2P53127 1403 aa15.4■□□□□ 0.06
SHH4YLR164W ULS1Q08562 1619 aa15.38■□□□□ 0.05
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms