RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C HXK1P04806 485 aaKnown RBP7.84□□□□□ -1.15
TDP1YBR223C MGM1P32266 881 aa7.84□□□□□ -1.15
TDP1YBR223C NUG1P40010 520 aaKnown RBP7.84□□□□□ -1.15
TDP1YBR223C FYV10P40492 516 aa7.84□□□□□ -1.15
TDP1YBR223C TFG2P41896 400 aaPredicted RBP7.84□□□□□ -1.15
TDP1YBR223C BUG1Q12191 341 aa7.84□□□□□ -1.15
TDP1YBR223C SSA2P10592 639 aaKnown RBP7.83□□□□□ -1.16
TDP1YBR223C CBP3P21560 335 aa7.83□□□□□ -1.16
TDP1YBR223C GSY2P27472 705 aa7.83□□□□□ -1.16
TDP1YBR223C YIL055CP40523 627 aaKnown RBP7.83□□□□□ -1.16
TDP1YBR223C YIR042CP40586 236 aa7.83□□□□□ -1.16
TDP1YBR223C IOC3P43596 787 aa7.83□□□□□ -1.16
TDP1YBR223C INM2Q05533 292 aa7.83□□□□□ -1.16
TDP1YBR223C CTI6Q08923 506 aa7.83□□□□□ -1.16
TDP1YBR223C DPH6Q12429 685 aa7.83□□□□□ -1.16
TDP1YBR223C COQ1P18900 473 aa7.82□□□□□ -1.16
TDP1YBR223C SRP40P32583 406 aaPredicted RBP7.82□□□□□ -1.16
TDP1YBR223C NPL4P33755 580 aa7.82□□□□□ -1.16
TDP1YBR223C GEF1P37020 779 aa7.82□□□□□ -1.16
TDP1YBR223C GRX7P38068 203 aa7.82□□□□□ -1.16
TDP1YBR223C RPN10P38886 268 aaKnown RBP7.82□□□□□ -1.16
TDP1YBR223C UFD2P54860 961 aa7.82□□□□□ -1.16
TDP1YBR223C DIB1Q06819 143 aaPredicted RBP7.82□□□□□ -1.16
TDP1YBR223C CYB2P00175 591 aa7.81□□□□□ -1.16
TDP1YBR223C AKR1P39010 764 aa7.81□□□□□ -1.16
TDP1YBR223C WAR1Q03631 944 aa7.81□□□□□ -1.16
TDP1YBR223C RPN1P38764 993 aaKnown RBP7.81□□□□□ -1.16
TDP1YBR223C SFI1Q12369 946 aa7.81□□□□□ -1.16
TDP1YBR223C MCM4P30665 933 aaKnown RBP7.8□□□□□ -1.16
TDP1YBR223C BMH2P34730 273 aaKnown RBP7.8□□□□□ -1.16
TDP1YBR223C TCD1P38756 429 aa7.8□□□□□ -1.16
TDP1YBR223C NPR2P39923 615 aa7.8□□□□□ -1.16
TDP1YBR223C ICP55P40051 511 aa7.8□□□□□ -1.16
TDP1YBR223C CTH1P47976 325 aa7.8□□□□□ -1.16
TDP1YBR223C FAR11P53917 953 aa7.8□□□□□ -1.16
TDP1YBR223C SYF1Q04048 859 aaPredicted RBP7.8□□□□□ -1.16
TDP1YBR223C TFC8Q12308 588 aa7.8□□□□□ -1.16
TDP1YBR223C CHO2P05374 869 aaKnown RBP7.79□□□□□ -1.16
TDP1YBR223C BOI1P38041 980 aaKnown RBP7.79□□□□□ -1.16
TDP1YBR223C RPS15Q01855 142 aaKnown RBP7.79□□□□□ -1.16
TDP1YBR223C DCS2Q12123 353 aa7.79□□□□□ -1.16
TDP1YBR223C FAS2P19097 1887 aaKnown RBP7.79□□□□□ -1.16
TDP1YBR223C SWI4P25302 1093 aaKnown RBP7.78□□□□□ -1.16
TDP1YBR223C SPC110P32380 944 aa7.78□□□□□ -1.16
TDP1YBR223C SAC6P32599 642 aaKnown RBP7.78□□□□□ -1.16
TDP1YBR223C CEP3P40969 608 aa7.78□□□□□ -1.16
TDP1YBR223C JSN1P47135 1091 aaKnown RBP RIP-Chip data7.78□□□□□ -1.16not detected
TDP1YBR223C UTP22P53254 1237 aaPredicted RBP7.78□□□□□ -1.16
TDP1YBR223C MRD1Q06106 887 aaKnown RBP7.78□□□□□ -1.16
TDP1YBR223C TFC6Q06339 672 aa7.78□□□□□ -1.16
TDP1YBR223C CSC1Q06538 782 aa7.78□□□□□ -1.16
TDP1YBR223C BDF2Q07442 638 aa7.78□□□□□ -1.16
TDP1YBR223C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.78□□□□□ -1.16not detected
TDP1YBR223C RPL22AP05749 121 aaKnown RBP7.78□□□□□ -1.16
TDP1YBR223C CDC6P09119 513 aa7.78□□□□□ -1.16
TDP1YBR223C OSW7P43611 510 aa7.78□□□□□ -1.16
TDP1YBR223C HCR1Q05775 265 aaKnown RBP7.78□□□□□ -1.16
TDP1YBR223C GET3Q12154 354 aaKnown RBP7.78□□□□□ -1.16
TDP1YBR223C NBL1Q3E7Y6 73 aa7.78□□□□□ -1.16
TDP1YBR223C URA1P28272 314 aaPredicted RBP7.77□□□□□ -1.17
TDP1YBR223C PTK1P36002 662 aaPredicted RBP7.77□□□□□ -1.17
TDP1YBR223C MAL31P38156 614 aa7.77□□□□□ -1.17
TDP1YBR223C MSH4P40965 878 aaPredicted RBP7.77□□□□□ -1.17
TDP1YBR223C RPT4P53549 437 aaKnown RBP7.77□□□□□ -1.17
TDP1YBR223C HDA1P53973 706 aa7.77□□□□□ -1.17
TDP1YBR223C VPS1P21576 704 aaKnown RBP7.76□□□□□ -1.17
TDP1YBR223C UBP1P25037 809 aa7.76□□□□□ -1.17
TDP1YBR223C CDC15P27636 974 aa7.76□□□□□ -1.17
TDP1YBR223C FRD1P32614 470 aaKnown RBP7.76□□□□□ -1.17
TDP1YBR223C ANP1P32629 500 aa7.76□□□□□ -1.17
TDP1YBR223C RPT3P33298 428 aaKnown RBP7.76□□□□□ -1.17
TDP1YBR223C MDL2P33311 773 aa7.76□□□□□ -1.17
TDP1YBR223C PSY4P38193 441 aa7.76□□□□□ -1.17
TDP1YBR223C ALG2P43636 503 aa7.76□□□□□ -1.17
TDP1YBR223C PTK2P47116 818 aaKnown RBP7.76□□□□□ -1.17
TDP1YBR223C CUE3P53137 624 aaKnown RBP7.76□□□□□ -1.17
TDP1YBR223C VPS75P53853 264 aa7.76□□□□□ -1.17
TDP1YBR223C GDE1Q02979 1223 aa7.76□□□□□ -1.17
TDP1YBR223C IRC4Q03036 179 aa7.76□□□□□ -1.17
TDP1YBR223C VPS60Q03390 229 aa7.76□□□□□ -1.17
TDP1YBR223C SAS4Q04003 481 aa7.76□□□□□ -1.17
TDP1YBR223C YCG1Q06680 1035 aa7.76□□□□□ -1.17
TDP1YBR223C ASF1P32447 279 aa7.75□□□□□ -1.17
TDP1YBR223C LTV1P34078 463 aa7.75□□□□□ -1.17
TDP1YBR223C BDF1P35817 686 aa7.75□□□□□ -1.17
TDP1YBR223C SPL2P38839 148 aa7.75□□□□□ -1.17
TDP1YBR223C RTS1P38903 757 aa7.75□□□□□ -1.17
TDP1YBR223C HPC2Q01448 625 aa7.75□□□□□ -1.17
TDP1YBR223C GFD1Q04839 188 aaKnown RBP7.75□□□□□ -1.17
TDP1YBR223C IRC3Q06683 689 aa7.75□□□□□ -1.17
TDP1YBR223C TMA16Q08687 178 aa7.75□□□□□ -1.17
TDP1YBR223C QCR6P00127 147 aa7.74□□□□□ -1.17
TDP1YBR223C ADE17P38009 592 aaKnown RBP7.74□□□□□ -1.17
TDP1YBR223C RXT2P38255 430 aa7.74□□□□□ -1.17
TDP1YBR223C MGA2P40578 1113 aa7.74□□□□□ -1.17
TDP1YBR223C EIS1Q05050 843 aaKnown RBP7.74□□□□□ -1.17
TDP1YBR223C RIX7Q07844 837 aaKnown RBP7.74□□□□□ -1.17
TDP1YBR223C MAK31P23059 88 aa7.74□□□□□ -1.17
TDP1YBR223C RIT1P23796 513 aa7.74□□□□□ -1.17
TDP1YBR223C LCB1P25045 558 aaKnown RBP7.74□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms