RNA–Protein interactions for RNA: YBR223C

TDP1, Transcript of Tyrosyl-DNA phosphodiesterase I, yeastyeast

Gene TDP1, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TDP1YBR223C SGS1P35187 1447 aa11.89□□□□□ -0.51
TDP1YBR223C INO80P53115 1489 aa11.6□□□□□ -0.55
TDP1YBR223C SPA2P23201 1466 aaKnown RBP11.52□□□□□ -0.57
TDP1YBR223C SSN2P38931 1420 aa11.44□□□□□ -0.58
TDP1YBR223C TCB3Q03640 1545 aaKnown RBP11.38□□□□□ -0.59
TDP1YBR223C TY1B-DR4Q07793 1604 aa11.19□□□□□ -0.62
TDP1YBR223C DRS1P32892 752 aaKnown RBP11.14□□□□□ -0.63
TDP1YBR223C HSL1P34244 1518 aa11.05□□□□□ -0.64
TDP1YBR223C SPT6P23615 1451 aaKnown RBP11.03□□□□□ -0.64
TDP1YBR223C MON2P48563 1636 aaPredicted RBP10.99□□□□□ -0.65
TDP1YBR223C SWR1Q05471 1514 aa10.88□□□□□ -0.67
TDP1YBR223C HIR3P47171 1648 aa10.87□□□□□ -0.67
TDP1YBR223C XRN1P22147 1528 aaKnown RBP10.84□□□□□ -0.67
TDP1YBR223C REV3P14284 1504 aa10.69□□□□□ -0.7
TDP1YBR223C THO2P53552 1597 aaKnown RBP10.65□□□□□ -0.71
TDP1YBR223C SIN3P22579 1536 aa10.61□□□□□ -0.71
TDP1YBR223C TAF2P23255 1407 aa10.59□□□□□ -0.71
TDP1YBR223C SSK2P53599 1579 aa10.57□□□□□ -0.72
TDP1YBR223C KOG1P38873 1557 aa10.49□□□□□ -0.73
TDP1YBR223C DNA2P38859 1522 aa10.48□□□□□ -0.73
TDP1YBR223C MYO2P19524 1574 aaKnown RBP10.47□□□□□ -0.73
TDP1YBR223C ESP1Q03018 1630 aa10.47□□□□□ -0.73
TDP1YBR223C BUD4P47136 1447 aa10.44□□□□□ -0.74
TDP1YBR223C SKI3P17883 1432 aaKnown RBP10.43□□□□□ -0.74
TDP1YBR223C CHD1P32657 1468 aa10.38□□□□□ -0.75
TDP1YBR223C ECM5Q03214 1411 aa10.37□□□□□ -0.75
TDP1YBR223C MMS22Q06164 1454 aa10.36□□□□□ -0.75
TDP1YBR223C ATG2P53855 1592 aa10.36□□□□□ -0.75
TDP1YBR223C POL1P13382 1468 aa10.33□□□□□ -0.76
TDP1YBR223C YPK9Q12697 1472 aa10.31□□□□□ -0.76
TDP1YBR223C STU1P38198 1513 aa10.31□□□□□ -0.76
TDP1YBR223C YTA7P40340 1379 aa10.27□□□□□ -0.76
TDP1YBR223C MDS3P53094 1487 aa10.22□□□□□ -0.77
TDP1YBR223C PEP1P32319 1579 aa10.21□□□□□ -0.77
TDP1YBR223C RKR1Q04781 1562 aa10.19□□□□□ -0.78
TDP1YBR223C SCC2Q04002 1493 aa10.19□□□□□ -0.78
TDP1YBR223C SAS10Q12136 610 aaPredicted RBP10.19□□□□□ -0.78
TDP1YBR223C BPT1P14772 1559 aa10.19□□□□□ -0.78
TDP1YBR223C YOR1P53049 1477 aa10.17□□□□□ -0.78
TDP1YBR223C RPO31P04051 1460 aa10.14□□□□□ -0.79
TDP1YBR223C MYO4P32492 1471 aa10.12□□□□□ -0.79
TDP1YBR223C TOP2P06786 1428 aaKnown RBP10.11□□□□□ -0.79
TDP1YBR223C UFD4P33202 1483 aa10.09□□□□□ -0.79
TDP1YBR223C SMC4Q12267 1418 aa10.09□□□□□ -0.79
TDP1YBR223C YCF1P39109 1515 aaKnown RBP10.06□□□□□ -0.8
TDP1YBR223C TAF7Q05021 590 aa10.04□□□□□ -0.8
TDP1YBR223C TY2B-LR1P0C2J3 1770 aa10□□□□□ -0.81
TDP1YBR223C TY2B-FP0CX63 1770 aa10□□□□□ -0.81
TDP1YBR223C TY2B-GR2P0CX64 1770 aa10□□□□□ -0.81
TDP1YBR223C TY2B-CP25384 1770 aa10□□□□□ -0.81
TDP1YBR223C TY2B-DR2Q03494 1770 aa10□□□□□ -0.81
TDP1YBR223C TY1B-DR1Q03855 1755 aa10□□□□□ -0.81
TDP1YBR223C TY2B-DR3Q07791 1770 aaKnown RBP10□□□□□ -0.81
TDP1YBR223C TY2B-OR1Q12113 1770 aa10□□□□□ -0.81
TDP1YBR223C TY2B-DR1Q12472 1770 aa10□□□□□ -0.81
TDP1YBR223C TY2B-OR2Q12501 1770 aa10□□□□□ -0.81
TDP1YBR223C TRM732Q03496 1420 aa10□□□□□ -0.81
TDP1YBR223C RSE1Q04693 1361 aaKnown RBP10□□□□□ -0.81
TDP1YBR223C STH1P32597 1359 aa9.99□□□□□ -0.81
TDP1YBR223C SNQ2P32568 1501 aaKnown RBP9.98□□□□□ -0.81
TDP1YBR223C TY1B-DR3Q99231 1755 aa9.97□□□□□ -0.81
TDP1YBR223C IKI3Q06706 1349 aaKnown RBP9.96□□□□□ -0.82
TDP1YBR223C TY2B-BQ12491 1770 aa9.92□□□□□ -0.82
TDP1YBR223C RQC2Q12532 1038 aaKnown RBP9.92□□□□□ -0.82
TDP1YBR223C MLP2P40457 1679 aa9.91□□□□□ -0.82
TDP1YBR223C SPP41P38904 1435 aa9.89□□□□□ -0.83
TDP1YBR223C IFH1P39520 1085 aa9.89□□□□□ -0.83
TDP1YBR223C PDR15Q04182 1529 aaKnown RBP9.88□□□□□ -0.83
TDP1YBR223C GEA1P47102 1408 aaPredicted RBP9.84□□□□□ -0.83
TDP1YBR223C TY1B-HO13535 1793 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-DR5P0C2I2 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-DR6P0C2I3 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-LR2P0C2I5 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-LR3P0C2I6 1755 aaKnown RBP9.83□□□□□ -0.84
TDP1YBR223C TY1B-PR1P0C2I9 1755 aaKnown RBP9.83□□□□□ -0.84
TDP1YBR223C TY1B-PR2P0C2J0 1756 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-PR3P0C2J1 1755 aaKnown RBP9.83□□□□□ -0.84
TDP1YBR223C TY1B-JR1P47098 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-ML2Q03434 1755 aaKnown RBP9.83□□□□□ -0.84
TDP1YBR223C TY1B-ER1Q03612 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-ML1Q04711 1755 aaKnown RBP9.83□□□□□ -0.84
TDP1YBR223C TY1B-GR2Q12269 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-OLQ12273 1755 aa9.83□□□□□ -0.84
TDP1YBR223C TY1B-PLQ12414 1755 aaKnown RBP9.83□□□□□ -0.84
TDP1YBR223C TY1B-BRQ12193 1756 aa9.82□□□□□ -0.84
TDP1YBR223C TY1B-GR3Q12316 1755 aa9.82□□□□□ -0.84
TDP1YBR223C TY1B-ORQ92393 1755 aa9.82□□□□□ -0.84
TDP1YBR223C TSC11P40061 1430 aa9.81□□□□□ -0.84
TDP1YBR223C NUP170P38181 1502 aa9.81□□□□□ -0.84
TDP1YBR223C VTH1P40438 1549 aa9.81□□□□□ -0.84
TDP1YBR223C VTH2P40890 1549 aa9.81□□□□□ -0.84
TDP1YBR223C ULS1Q08562 1619 aa9.8□□□□□ -0.84
TDP1YBR223C CDC25P04821 1589 aa9.79□□□□□ -0.84
TDP1YBR223C SSM4P40318 1319 aa9.79□□□□□ -0.84
TDP1YBR223C PAN1P32521 1480 aa9.75□□□□□ -0.85
TDP1YBR223C SNT2P53127 1403 aa9.72□□□□□ -0.85
TDP1YBR223C RTT106P40161 455 aa9.7□□□□□ -0.86
TDP1YBR223C TY3B-GQ99315 1547 aa9.69□□□□□ -0.86
TDP1YBR223C TY1B-JR2P47100 1755 aaKnown RBP9.68□□□□□ -0.86
TDP1YBR223C TY1B-ER2Q03619 1755 aa9.68□□□□□ -0.86
Retrieved 100 of 5,963 RNA–protein pairs in 7.5 ms