Protein–RNA interactions for Protein: P53549

RPT4, 26S proteasome subunit RPT4, yeastyeast

Known RBP Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPT4P53549 YML009W-BYML009W-B 477 nt24.77■■□□□ 1.56
RPT4P53549 NSR1YGR159C 1245 nt24.25■■□□□ 1.47
RPT4P53549 NOP1YDL014W 984 nt24.17■■□□□ 1.46
RPT4P53549 YKL036CYKL036C 393 nt22.74■■□□□ 1.23
RPT4P53549 Q0297Q0297 156 nt21.36■■□□□ 1.01
RPT4P53549 YJL027CYJL027C 417 nt21.29■■□□□ 1
RPT4P53549 MDJ1YFL016C 1536 nt21.22■□□□□ 0.99
RPT4P53549 SRX1YKL086W 384 nt21.18■□□□□ 0.98
RPT4P53549 SCS3YGL126W 1143 nt20.93■□□□□ 0.94
RPT4P53549 YCR051WYCR051W 669 nt20.12■□□□□ 0.81
RPT4P53549 YOL085CYOL085C 342 nt19.71■□□□□ 0.75
RPT4P53549 PKP1YIL042C 1185 nt19.39■□□□□ 0.69
RPT4P53549 RPP1BYDL130W 321 nt19.16■□□□□ 0.66
RPT4P53549 SCJ1YMR214W 1134 nt18.99■□□□□ 0.63
RPT4P53549 DBP2YNL112W 1641 nt18.96■□□□□ 0.63
RPT4P53549 TRN1tP(UGG)A 72 nt18.95■□□□□ 0.62
RPT4P53549 SUF9tP(UGG)F 72 nt18.95■□□□□ 0.62
RPT4P53549 SUF8tP(UGG)H 72 nt18.95■□□□□ 0.62
RPT4P53549 tP(UGG)LtP(UGG)L 72 nt18.95■□□□□ 0.62
RPT4P53549 SUF7tP(UGG)M 72 nt18.95■□□□□ 0.62
RPT4P53549 tP(UGG)N1tP(UGG)N1 72 nt18.95■□□□□ 0.62
RPT4P53549 tP(UGG)N2tP(UGG)N2 72 nt18.95■□□□□ 0.62
RPT4P53549 tP(UGG)O1tP(UGG)O1 72 nt18.95■□□□□ 0.62
RPT4P53549 SUF11tP(UGG)O2 72 nt18.95■□□□□ 0.62
RPT4P53549 ATS1YAL020C 1002 nt18.82■□□□□ 0.6
RPT4P53549 CCC1YLR220W 969 nt18.74■□□□□ 0.59
RPT4P53549 PET122YER153C 765 nt18.3■□□□□ 0.52
RPT4P53549 SCR1SCR1 522 nt18.13■□□□□ 0.49
RPT4P53549 tP(UGG)O3tP(UGG)O3 72 nt18.05■□□□□ 0.48
RPT4P53549 YBR190WYBR190W 312 nt17.93■□□□□ 0.46
RPT4P53549 RRN5YLR141W 1092 nt17.8■□□□□ 0.44
RPT4P53549 RVS167YDR388W 1449 nt17.8■□□□□ 0.44
RPT4P53549 RTC3YHR087W 336 nt17.54■□□□□ 0.4
RPT4P53549 RSB1YOR049C 1065 nt17.53■□□□□ 0.4
RPT4P53549 YER088W-BYER088W-B 147 nt17.45■□□□□ 0.38
RPT4P53549 YDJ1YNL064C 1230 nt17.44■□□□□ 0.38
RPT4P53549 PST2YDR032C 597 nt17.38■□□□□ 0.37
RPT4P53549 SHR5YOL110W 714 nt17.32■□□□□ 0.36
RPT4P53549 GAR1YHR089C 618 nt17■□□□□ 0.31
RPT4P53549 YKL097CYKL097C 411 nt16.87■□□□□ 0.29
RPT4P53549 DEP1YAL013W 1218 nt16.73■□□□□ 0.27
RPT4P53549 SHU1YHL006C 453 nt16.6■□□□□ 0.25
RPT4P53549 URN1YPR152C 1398 nt16.6■□□□□ 0.25
RPT4P53549 YNL208WYNL208W 600 nt16.46■□□□□ 0.23
RPT4P53549 TIR1YER011W 765 nt16.41■□□□□ 0.22
RPT4P53549 RPN10YHR200W 807 nt16.38■□□□□ 0.21
RPT4P53549 OPI9YLR338W 858 nt16.28■□□□□ 0.2
RPT4P53549 YAL037C-BYAL037C-B 975 nt16.23■□□□□ 0.19
RPT4P53549 YOR139CYOR139C 393 nt16.19■□□□□ 0.18
RPT4P53549 SSA1YAL005C 1929 nt16.16■□□□□ 0.18
RPT4P53549 SAH1YER043C 1350 nt16.1■□□□□ 0.17
RPT4P53549 SRB2YHR041C 633 nt16.05■□□□□ 0.16
RPT4P53549 PUT4YOR348C 1884 nt16.01■□□□□ 0.15
RPT4P53549 NPL3YDR432W 1245 nt15.88■□□□□ 0.13
RPT4P53549 YJR018WYJR018W 363 nt15.86■□□□□ 0.13
RPT4P53549 ARE1YCR048W 1833 nt15.86■□□□□ 0.13
RPT4P53549 YJR120WYJR120W 351 nt15.8■□□□□ 0.12
RPT4P53549 WWM1YFL010C 636 nt15.78■□□□□ 0.12
RPT4P53549 MNP1YGL068W 585 nt15.78■□□□□ 0.12
RPT4P53549 PUN1YLR414C 792 nt15.78■□□□□ 0.12
RPT4P53549 HOM6YJR139C 1080 nt15.77■□□□□ 0.12
RPT4P53549 YGR021WYGR021W 873 nt15.74■□□□□ 0.11
RPT4P53549 YHR049C-AYHR049C-A 297 nt15.63■□□□□ 0.09
RPT4P53549 YOL037CYOL037C 354 nt15.61■□□□□ 0.09
RPT4P53549 RPP2BYDR382W 333 nt15.59■□□□□ 0.09
RPT4P53549 POA1YBR022W 534 nt15.55■□□□□ 0.08
RPT4P53549 PTC2YER089C 1395 nt15.54■□□□□ 0.08
RPT4P53549 RKM5YLR137W 1104 nt15.53■□□□□ 0.08
RPT4P53549 tM(CAU)CtM(CAU)C 72 nt15.52■□□□□ 0.08
RPT4P53549 IMT4tM(CAU)E 72 nt15.52■□□□□ 0.08
RPT4P53549 IMT3tM(CAU)J3 72 nt15.52■□□□□ 0.08
RPT4P53549 IMT1tM(CAU)O1 72 nt15.52■□□□□ 0.08
RPT4P53549 IMT2tM(CAU)P 72 nt15.52■□□□□ 0.08
RPT4P53549 SSA3YBL075C 1950 nt15.52■□□□□ 0.07
RPT4P53549 YFL021C-AYFL021C-A 855 nt15.47■□□□□ 0.07
RPT4P53549 BDH2YAL061W 1254 nt15.4■□□□□ 0.06
RPT4P53549 BUD23YCR047C 828 nt15.29■□□□□ 0.04
RPT4P53549 NAB2YGL122C 1578 nt15.26■□□□□ 0.03
RPT4P53549 YLR281CYLR281C 468 nt15.25■□□□□ 0.03
RPT4P53549 LSM3YLR438C-A 270 nt15.25■□□□□ 0.03
RPT4P53549 PUS2YGL063W 1113 nt15.23■□□□□ 0.03
RPT4P53549 INM2YDR287W 879 nt15.21■□□□□ 0.03
RPT4P53549 DAL1YIR027C 1383 nt15.15■□□□□ 0.02
RPT4P53549 FIS1YIL065C 468 nt15.15■□□□□ 0.02
RPT4P53549 YBL100CYBL100C 315 nt15.15■□□□□ 0.02
RPT4P53549 WHI5YOR083W 888 nt15.14■□□□□ 0.01
RPT4P53549 BSC6YOL137W 1494 nt15.13■□□□□ 0.01
RPT4P53549 FPR4YLR449W 1179 nt15.12■□□□□ 0.01
RPT4P53549 MOT3YMR070W 1473 nt15.06■□□□□ 0
RPT4P53549 PHO4YFR034C 939 nt15.02■□□□□ -0
RPT4P53549 TRM9YML014W 840 nt15.01□□□□□ -0.01
RPT4P53549 FUN26YAL022C 1554 nt15□□□□□ -0.01
RPT4P53549 YPR011CYPR011C 981 nt14.94□□□□□ -0.02
RPT4P53549 CCT6YDR188W 1641 nt14.87□□□□□ -0.03
RPT4P53549 FMP45YDL222C 930 nt14.86□□□□□ -0.03
RPT4P53549 YLR236CYLR236C 324 nt14.86□□□□□ -0.03
RPT4P53549 DSK2YMR276W 1122 nt14.85□□□□□ -0.03
RPT4P53549 YLR154C-GYLR154C-G 150 nt14.83□□□□□ -0.04
RPT4P53549 IMP2'YIL154C 1041 nt14.74□□□□□ -0.05
RPT4P53549 YCH1YGR203W 447 nt14.7□□□□□ -0.06
Retrieved 100 of 7,029 protein–RNA pairs in 12.1 ms